Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Forward (+)

77497335 .. 77499922

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGAAGAACAACGCGTCGTTGAAATTGGTGGACGAGTTCTTGAAGCGGTGCCAACAATCCGGCGATGCCGCCTACTCTGCTCTAAGATCAGTGTTGGAGAGTCTCGAGGATCCGAAAACCCGAACTCAAGCTCGGATCTTCCTCTCCGACCTTCATAAGCGCTTTCCTACCCCCCACCGGAGCTACACTCTCGGAATGATCCGATTCTATTGCCTACAAAACCAAGGCAGTGGCGCTTCGCTCATGGCTACGTTGTCGTCAGCCGGACGGAGCTCTCTGGCGTTTTGGGGATCGATGGAGTTTGATTCGTGCCAGTTGAGTGTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001887 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0016740 GO:0016741 GO:0017144 GO:0032259 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046500 GO:0051186 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Aminotran_1_2 MTS Methyltransf_31

Protein Analysis

110

Amino Acids

12.29

Weight (kDa)

9.45

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	49, 72
AclWI	GGATC	5 cut(s)	107, 120, 146, 196, 301
AfeI	AGCGCT	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	25, 46
AluBI	AGCT	3 cut(s)	134, 186, 276
AluI	AGCT	3 cut(s)	134, 186, 276
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	5 cut(s)	107, 120, 146, 196, 301
Ama87I	CYCGRG	1 cut(s)	107
Aor51HI	AGCGCT	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	165, 239
AvaI	CYCGRG	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	278
BccI	CCATC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BcoDI	GTCTC	1 cut(s)	110
BfoI	RGCGCY	2 cut(s)	166, 240
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	53, 114
BmsI	GCATC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpuEI	CTTGAG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	316
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	63, 181, 267
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	5 cut(s)	89, 112, 138, 201, 293
BspACI	CCGC	2 cut(s)	49, 72
BspDI	ATCGAT	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	53, 114
BspPI	GGATC	5 cut(s)	107, 120, 146, 196, 301
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	5 cut(s)	89, 112, 138, 201, 293
BssT1I	CCWWGG	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	2 cut(s)	166, 240
BstHHI	GCGC	2 cut(s)	165, 239
BstKTI	GATC	5 cut(s)	92, 115, 141, 204, 296
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	5 cut(s)	89, 112, 138, 201, 293
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	112, 138
BstXI	CCANNNNNNTGG	1 cut(s)	233
BstYI	RGATCY	2 cut(s)	112, 138
Bsu15I	ATCGAT	1 cut(s)	296
BsuTUI	ATCGAT	1 cut(s)	296
BtgZI	GCGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	99, 238
CfoI	GCGC	2 cut(s)	165, 239
ClaI	ATCGAT	1 cut(s)	296
CseI	GACGC	1 cut(s)	6
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	5 cut(s)	134, 186, 251, 266, 276
CviKI_1	RGCY	5 cut(s)	134, 186, 251, 266, 276
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	5 cut(s)	91, 114, 140, 203, 295
DpnII	GATC	5 cut(s)	89, 112, 138, 201, 293
Ecl136II	GAGCTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	278
Eco47III	AGCGCT	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	250
FaiI	YATR	2 cut(s)	159, 248
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	72
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	72
GlaI	GCGC	2 cut(s)	164, 238
GluI	GCNGC	1 cut(s)	72
HaeII	RGCGCY	2 cut(s)	166, 240
HapII	CCGG	3 cut(s)	63, 181, 267
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	2 cut(s)	165, 239
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	2 cut(s)	163, 237
HinP1I	GCGC	2 cut(s)	163, 237
HinfI	GANTC	3 cut(s)	103, 207, 308
HpaII	CCGG	3 cut(s)	63, 181, 267
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	117, 138, 151, 197, 206
Hpy188III	TCNNGA	2 cut(s)	43, 107
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	2 cut(s)	163, 237
Kzo9I	GATC	5 cut(s)	89, 112, 138, 201, 293
LmnI	GCTCC	2 cut(s)	183, 273
LpnPI	CCDG	5 cut(s)	76, 194, 266, 280, 329
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	254
MalI	GATC	5 cut(s)	91, 114, 140, 203, 295
MboI	GATC	5 cut(s)	89, 112, 138, 201, 293
MboII	GAAGA	2 cut(s)	19, 133
MflI	RGATCY	2 cut(s)	112, 138
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	1 cut(s)	26
MluI	ACGCGT	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	2 cut(s)	78, 174
MnlI	CCTC	2 cut(s)	103, 155
MspI	CCGG	3 cut(s)	63, 181, 267
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	5 cut(s)	89, 112, 138, 201, 293
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	2 cut(s)	53, 114
PaeR7I	CTCGAG	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	207, 308
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	53, 114
PsuI	RGATCY	2 cut(s)	112, 138
SacI	GAGCTC	1 cut(s)	278
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	5 cut(s)	89, 112, 138, 201, 293
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	6 cut(s)	136, 156, 188, 257, 278, 332
SfaNI	GCATC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	107, 129
SmoI	CTYRAG	2 cut(s)	107, 129
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	49, 72
SstI	GAGCTC	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	226
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	108, 296
TasI	AATT	1 cut(s)	26
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	207, 308
TscAI	CASTG	2 cut(s)	99, 238
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	99, 238
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.