Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007965.1

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Forward (+)

2335 .. 2636

Gene Structure 302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atggcgaagaacaacgcgtcgttgaaatcggtggacgagttcttgaagcggtgccaacaatccggcgatgccgcctactctgctctgagatcagtgttggagcgtctcgaggatctgaaaacccgaactcaagctcggatcttcctctctgaccttcataagcgcttccctaccccccaccggagctacactctcggaatgatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001887 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0016740 GO:0016741 GO:0017144 GO:0032259 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046500 GO:0051186 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Aminotran_1_2 MTS Methyltransf_31

Protein Analysis

68

Amino Acids

7.81

Weight (kDa)

9.89

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	49, 72
AclWI	GGATC	2 cut(s)	120, 146
AfeI	AGCGCT	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	25, 46
AluBI	AGCT	2 cut(s)	134, 186
AluI	AGCT	2 cut(s)	134, 186
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	120, 146
Ama87I	CYCGRG	1 cut(s)	107
Aor51HI	AGCGCT	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	165
AvaI	CYCGRG	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpuEI	CTTGAG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	63, 181
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	89, 112, 138, 201
BspACI	CCGC	2 cut(s)	49, 72
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	120, 146
BspT107I	GGYRCC	1 cut(s)	51
BssMI	GATC	4 cut(s)	89, 112, 138, 201
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	4 cut(s)	92, 115, 141, 204
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	4 cut(s)	89, 112, 138, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	112, 138
BstYI	RGATCY	2 cut(s)	112, 138
BtgZI	GCGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	99
CfoI	GCGC	1 cut(s)	165
CseI	GACGC	2 cut(s)	6, 92
CviJI	RGCY	2 cut(s)	134, 186
CviKI_1	RGCY	2 cut(s)	134, 186
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	4 cut(s)	91, 114, 140, 203
DpnII	GATC	4 cut(s)	89, 112, 138, 201
Eco47III	AGCGCT	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	110
FaiI	YATR	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	166
HapII	CCGG	2 cut(s)	63, 181
HgaI	GACGC	2 cut(s)	6, 92
HhaI	GCGC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	63, 181
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	6 cut(s)	87, 117, 138, 151, 197, 206
Hpy188III	TCNNGA	2 cut(s)	43, 107
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	89, 112, 138, 201
LmnI	GCTCC	2 cut(s)	100, 183
LpnPI	CCDG	2 cut(s)	76, 194
LweI	GCATC	1 cut(s)	58
MalI	GATC	4 cut(s)	91, 114, 140, 203
MboI	GATC	4 cut(s)	89, 112, 138, 201
MboII	GAAGA	2 cut(s)	19, 133
MflI	RGATCY	2 cut(s)	112, 138
MluI	ACGCGT	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	2 cut(s)	103, 155
MspI	CCGG	2 cut(s)	63, 181
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	4 cut(s)	89, 112, 138, 201
NlaIV	GGNNCC	1 cut(s)	53
PaeR7I	CTCGAG	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	112, 138
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	4 cut(s)	89, 112, 138, 201
SetI	ASST	3 cut(s)	136, 156, 188
SfaNI	GCATC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	107, 129
SmoI	CTYRAG	2 cut(s)	107, 129
SsiI	CCGC	2 cut(s)	49, 72
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	99
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.