Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Forward (+)

11686437 .. 11688140

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG141600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATCTCCTTACCAACGGGTTTGATTCTCTTCTCAATTCTCCCTAGTTTTTTTTCCAGCTCTGGAATTTGTAATTGTAGTGAATTGAAGGTTCTGGAACTTAGAATTGGAATCAGGTACTACACGACGCGGCTGTGGATTGGGACACCGCCTGAGATGTTCGCTCTGATTGTGGATACGGGGAGTAGAGAATTAAGGTCACCTGATTGGGACACCGCCACCTCAAATCTGGCAGCTGCGGCGGAGAAGCCGCTGCCAATACCAGCTGCAGCCTATTTGATGTGTACGCAAACAAGGCCTTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

6.14

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AciI	CCGC	6 cut(s)	130, 149, 216, 239, 242, 251
AcsI	RAATTY	1 cut(s)	66
AfaI	GTAC	2 cut(s)	119, 286
AgsI	TTSAA	1 cut(s)	88
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	3 cut(s)	60, 236, 266
AluI	AGCT	3 cut(s)	60, 236, 266
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	5 cut(s)	233, 236, 253, 266, 269
ApoI	RAATTY	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	192
BbvI	GCAGC	5 cut(s)	223, 240, 245, 253, 281
BciVI	GTATCC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	8 cut(s)	131, 234, 237, 240, 251, 254, 267, 270
BlsI	GCNGC	8 cut(s)	132, 235, 238, 241, 252, 255, 268, 271
BsaJI	CCNNGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	5 cut(s)	223, 240, 245, 253, 281
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	298
BslFI	GGGAC	2 cut(s)	157, 224
BsmFI	GGGAC	2 cut(s)	157, 224
BsnI	GGCC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	6 cut(s)	130, 149, 216, 239, 242, 251
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	101, 153
BstEII	GGTNACC	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 295
BstPI	GGTNACC	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	5 cut(s)	223, 240, 245, 253, 281
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	118, 285
CviAII	CATG	1 cut(s)	306
CviJI	RGCY	7 cut(s)	60, 133, 236, 250, 266, 272, 298
CviKI_1	RGCY	7 cut(s)	60, 133, 236, 250, 266, 272, 298
CviQI	GTAC	2 cut(s)	118, 285
DdeI	CTNAG	2 cut(s)	101, 153
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	1 cut(s)	309
FaiI	YATR	1 cut(s)	307
FaqI	GGGAC	2 cut(s)	157, 224
FatI	CATG	1 cut(s)	305
Fnu4HI	GCNGC	8 cut(s)	131, 234, 237, 240, 251, 254, 267, 270
Fsp4HI	GCNGC	8 cut(s)	131, 234, 237, 240, 251, 254, 267, 270
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	8 cut(s)	131, 234, 237, 240, 251, 254, 267, 270
HaeIII	GGCC	1 cut(s)	298
HgaI	GACGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	309
HinfI	GANTC	2 cut(s)	25, 111
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	63, 95
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 295
HpyF3I	CTNAG	2 cut(s)	101, 153
Hsp92II	CATG	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	8 cut(s)	48, 70, 80, 100, 165, 215, 216, 276
Lsp1109I	GCAGC	5 cut(s)	223, 240, 245, 253, 281
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	22
MluCI	AATT	6 cut(s)	36, 66, 73, 83, 105, 191
MnlI	CCTC	1 cut(s)	232
MseI	TTAA	1 cut(s)	194
MspA1I	CMGCKG	3 cut(s)	236, 253, 266
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	239, 295
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	198
PceI	AGGCCT	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	25, 111
PkrI	GCNGC	8 cut(s)	132, 235, 238, 241, 252, 255, 268, 271
PspEI	GGTNACC	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	271
PvuII	CAGCTG	2 cut(s)	236, 266
RsaI	GTAC	2 cut(s)	119, 286
RsaNI	GTAC	2 cut(s)	118, 285
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	8 cut(s)	131, 234, 237, 240, 251, 254, 267, 270
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	8 cut(s)	62, 93, 119, 200, 205, 224, 238, 268
SfcI	CTRYAG	1 cut(s)	267
Sse9I	AATT	6 cut(s)	36, 66, 73, 83, 105, 191
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	6 cut(s)	130, 149, 216, 239, 242, 251
SspMI	CTAG	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	299
TasI	AATT	6 cut(s)	36, 66, 73, 83, 105, 191
TauI	GCSGC	3 cut(s)	133, 242, 253
TfiI	GAWTC	2 cut(s)	25, 111
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	5 cut(s)	233, 236, 253, 266, 269
Tsp45I	GTSAC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.