Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Reverse (-)

31250706 .. 31251136

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCGAAGAACAACGCGTCGTTGAAATCGATGGACAAGTTCTTGAAGCGGTGCCAACAATCCGGCGATGCCGCCTACTCTGCTCTGAGATCAGTGTTGGAGCGTCTCGAGGATCCGAAAACCCGAACTCAAGCTCGGATCTTCCTCTCCGACCTTCATAAGCTCTTCCCTACCCCTCACCGGAGCTACACTCTCGGAATGTTACAGATCCGATTCTATTGCCTACAAAACCAAGGCAGTGGCGCTTCGCTCATGGCTACGTTGTCGTCAGCCGGACGAAACTCTCTGGCGTTTCGGGGATCGATGGAGTTTGATTCGTGCCAGTTGAGTGTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001887 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0016740 GO:0016741 GO:0017144 GO:0032259 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046500 GO:0051186 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Aminotran_1_2 MTS Methyltransf_31

Protein Analysis

112

Amino Acids

12.56

Weight (kDa)

9.95

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	49, 72
AclWI	GGATC	5 cut(s)	107, 120, 146, 202, 307
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	25, 46
AluBI	AGCT	3 cut(s)	134, 163, 186
AluI	AGCT	3 cut(s)	134, 163, 186
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	5 cut(s)	107, 120, 146, 202, 307
Ama87I	CYCGRG	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	51
BccI	CCATC	2 cut(s)	25, 298
BcgI	CGANNNNNNTGC	2 cut(s)	201, 235
BcoDI	GTCTC	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	246
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	53, 114
BmsI	GCATC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpuEI	CTTGAG	1 cut(s)	114
Bsa29I	ATCGAT	2 cut(s)	29, 302
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	322
BseCI	ATCGAT	2 cut(s)	29, 302
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	2 cut(s)	29, 302
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	63, 181, 273
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	107
Bsp143I	GATC	5 cut(s)	89, 112, 138, 207, 299
BspACI	CCGC	2 cut(s)	49, 72
BspCNI	CTCAG	1 cut(s)	78
BspDI	ATCGAT	2 cut(s)	29, 302
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	53, 114
BspPI	GGATC	5 cut(s)	107, 120, 146, 202, 307
BspQI	GCTCTTC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	5 cut(s)	89, 112, 138, 207, 299
BssT1I	CCWWGG	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	5 cut(s)	92, 115, 141, 210, 302
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	5 cut(s)	89, 112, 138, 207, 299
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	17
BstX2I	RGATCY	3 cut(s)	112, 138, 207
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	3 cut(s)	112, 138, 207
Bsu15I	ATCGAT	2 cut(s)	29, 302
BsuTUI	ATCGAT	2 cut(s)	29, 302
BtgZI	GCGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	99, 244
CfoI	GCGC	1 cut(s)	245
ClaI	ATCGAT	2 cut(s)	29, 302
CseI	GACGC	2 cut(s)	6, 92
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	134, 163, 186, 257, 272
CviKI_1	RGCY	5 cut(s)	134, 163, 186, 257, 272
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	5 cut(s)	91, 114, 140, 209, 301
DpnII	GATC	5 cut(s)	89, 112, 138, 207, 299
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	159, 254
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	246
HapII	CCGG	3 cut(s)	63, 181, 273
HgaI	GACGC	2 cut(s)	6, 92
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	2 cut(s)	213, 314
HpaII	CCGG	3 cut(s)	63, 181, 273
HphI	GGTGA	1 cut(s)	170
Hpy188I	TCNGA	6 cut(s)	87, 117, 138, 151, 197, 212
Hpy188III	TCNNGA	2 cut(s)	43, 107
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	5 cut(s)	89, 112, 138, 207, 299
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	2 cut(s)	100, 183
LpnPI	CCDG	5 cut(s)	76, 194, 272, 286, 335
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	5 cut(s)	91, 114, 140, 209, 301
MboI	GATC	5 cut(s)	89, 112, 138, 207, 299
MboII	GAAGA	3 cut(s)	19, 133, 157
MflI	RGATCY	3 cut(s)	112, 138, 207
MluI	ACGCGT	1 cut(s)	15
MmeI	TCCRAC	2 cut(s)	78, 174
MnlI	CCTC	3 cut(s)	103, 155, 186
MspI	CCGG	3 cut(s)	63, 181, 273
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	5 cut(s)	89, 112, 138, 207, 299
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	53, 114
PaeR7I	CTCGAG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	213, 314
PkrI	GCNGC	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	53, 114
PsuI	RGATCY	3 cut(s)	112, 138, 207
SapI	GCTCTTC	1 cut(s)	170
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	5 cut(s)	89, 112, 138, 207, 299
SetI	ASST	6 cut(s)	136, 156, 165, 188, 263, 338
SfaNI	GCATC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	107, 129
SmoI	CTYRAG	2 cut(s)	107, 129
SsiI	CCGC	2 cut(s)	49, 72
StyI	CCWWGG	1 cut(s)	232
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	29, 108, 302
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	213, 314
TscAI	CASTG	2 cut(s)	99, 244
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	99, 244
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.