Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Forward (+)

40610256 .. 40613808

Gene Structure 3553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGCGCACACTAGTGCCGGGACTGCTGGACCGAACCACCTCCTCTCTCGAGTGTCAATGGCGAAGAACGACGCGTCCTTCGGATCGGTGGGTGAGTTCTTGAAGCGGTGCCAGCAATCCGGCGAGTCTTCGACGATCGACATCTCCGAGAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

52

Amino Acids

5.45

Weight (kDa)

6.7

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	103
AhlI	ACTAGT	1 cut(s)	11
AleI	CACNNNNGTG	1 cut(s)	12
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
AlwI	GGATC	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	48
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	19
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	29
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	140
BseJI	GATNNNNATC	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	18, 120
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	83, 135, 152
BspACI	CCGC	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	108
BssMI	GATC	3 cut(s)	83, 135, 152
BstC8I	GCNNGC	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	86, 138, 155
BstMBI	GATC	3 cut(s)	83, 135, 152
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 112
BstSCI	CCNGG	1 cut(s)	17
BstUI	CGCG	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	29
CseI	GACGC	2 cut(s)	63, 80
DpnI	GATC	3 cut(s)	85, 137, 154
DpnII	GATC	3 cut(s)	83, 135, 152
Eco47I	GGWCC	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	48
FaiI	YATR	1 cut(s)	157
FaqI	GGGAC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	6
HapII	CCGG	2 cut(s)	18, 120
HgaI	GACGC	2 cut(s)	63, 80
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	2 cut(s)	18, 120
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	83, 148
Hpy188III	TCNNGA	2 cut(s)	48, 100
Hpy99I	CGWCG	2 cut(s)	74, 136
HpyAV	CCTTC	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 112
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	83, 135, 152
LpnPI	CCDG	4 cut(s)	12, 31, 125, 133
MaeI	CTAG	1 cut(s)	12
MalI	GATC	3 cut(s)	85, 137, 154
MboI	GATC	3 cut(s)	83, 135, 152
MboII	GAAGA	2 cut(s)	76, 120
MluI	ACGCGT	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	2 cut(s)	50, 53
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	2 cut(s)	18, 120
MspR9I	CCNGG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	23, 112
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	83, 135, 152
NlaIV	GGNNCC	1 cut(s)	110
OliI	CACNNNNGTG	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	29
PvuI	CGATCG	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	83, 135, 152
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
SpeI	ACTAGT	1 cut(s)	11
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	17
TaqI	TCGA	3 cut(s)	49, 131, 138
TaqII	GACCGA	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	48
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.