Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Forward (+)

55222628 .. 55223687

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0401800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTATTGCTCGTCTGGTAGCTAATTGTTCCTTTCTTGTTTTTGCTTTTGTTTTCTTGCTCGGAGAGCCGCCTTGGTGTGGGCTCCCTGTGGTTACTGATTGGAAGGGTAGTGTTGCTGTTTGGATGGCTGATAGGAGGCCGAGCTCTAACGGCGTGGATCTGGTTTGGCCTGAGTTGGATGGGCGCGTCTGGGTTTTGGATCGGGGTCGTCAGACTTCCGACGGTGATGGGGATTGTACAATCGATTTGGTTAGCCCTGGTGGTTCGCTGCAGCGTCGGGGTATTGCAGGAGTGGGGTTGGCCCGATCAGTTCAGGGGAGCGATCAAAGTTTGGAGGATCTTCAGGTGGTCCTGGGCGACTCCGATCGGGTTCAGTCCTATCTAGGATCTGGTTTATTCAATGCTTGCGAAGGCACCGGAATGGATCTGAAGTTAGTCCGAGGTGATCAGGAATGGGAGCGGATTTGGGTGTCTTTCGATCCTGGAAATGGTACAGTATCGTTGGCGGTGAAGCACGGTGACAGGGGTTATGGGGATGGAGGTTTCCAGGGGTTCCCCTCGACTGGTATCGGCGACGGCGCATATGGTGTTTGTTGGGTGGAAGAGCACGTGTGGGCTCAAGGAACTAGGGCTGTGGTGTACCCTACTCTTTGGGCCTGCTTTTGGTGCTGCTGGGCTTCCTGGGCCTTGACCTGGTTTGTGACCCTTAGGTTTGGGCACTCTGGGCTAGGGTTTCAAGCGAGCTGGATTACCCTTTTGCTAGGGGGTTGGATGGATTGGGTCTCTATGGCCCATAGTGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001887 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0016740 GO:0016741 GO:0017144 GO:0032259 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046500 GO:0051186 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Aminotran_1_2 MTS Methyltransf_31

Protein Analysis

269

Amino Acids

29.26

Weight (kDa)

4.73

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	463
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	71, 463, 509
AclWI	GGATC	6 cut(s)	168, 210, 348, 397, 435, 476
AcuI	CTGAAG	2 cut(s)	329, 452
AcvI	CACGTG	1 cut(s)	613
AfaI	GTAC	3 cut(s)	241, 496, 644
AfiI	CCNNNNNNNGG	5 cut(s)	80, 491, 566, 666, 696
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	2 cut(s)	403, 740
AjnI	CCWGG	6 cut(s)	259, 354, 484, 549, 683, 695
AluBI	AGCT	3 cut(s)	23, 147, 747
AluI	AGCT	3 cut(s)	23, 147, 747
Alw21I	GWGCWC	2 cut(s)	149, 612
Alw26I	GTCTC	1 cut(s)	790
AlwI	GGATC	6 cut(s)	168, 210, 348, 397, 435, 476
AoxI	GGCC	6 cut(s)	140, 170, 303, 657, 687, 792
ApeKI	GCWGC	3 cut(s)	271, 274, 672
AspLEI	GCGC	2 cut(s)	189, 584
AspS9I	GGNCC	5 cut(s)	304, 352, 657, 687, 793
AsuHPI	GGTGA	4 cut(s)	239, 458, 523, 533
AvaII	GGWCC	1 cut(s)	352
AxyI	CCTNAGG	1 cut(s)	710
BaeGI	GKGCMC	1 cut(s)	723
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	3 cut(s)	87, 149, 622
BbrPI	CACGTG	1 cut(s)	613
Bbv12I	GWGCWC	2 cut(s)	149, 612
BbvI	GCAGC	3 cut(s)	258, 286, 659
BccI	CCATC	5 cut(s)	121, 176, 224, 533, 769
BceAI	ACGGC	2 cut(s)	169, 595
BciT130I	CCWGG	6 cut(s)	261, 356, 486, 551, 685, 697
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	790
BfaI	CTAG	4 cut(s)	386, 630, 731, 764
BfmI	CTRYAG	1 cut(s)	272
BisI	GCNGC	4 cut(s)	71, 272, 275, 673
BlsI	GCNGC	4 cut(s)	72, 273, 276, 674
Bme1390I	CCNGG	6 cut(s)	261, 356, 486, 551, 685, 697
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	5 cut(s)	304, 352, 657, 687, 793
BmiI	GGNNCC	3 cut(s)	86, 418, 557
BmrFI	CCNGG	6 cut(s)	261, 356, 486, 551, 685, 697
BpuEI	CTTGAG	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	613
BsaI	GGTCTC	1 cut(s)	790
BsaJI	CCNNGG	6 cut(s)	74, 259, 355, 442, 550, 684
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 491, 566, 666, 696
Bse1I	ACTGG	1 cut(s)	571
Bse21I	CCTNAGG	1 cut(s)	710
BseBI	CCWGG	6 cut(s)	261, 356, 486, 551, 685, 697
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	6 cut(s)	74, 259, 355, 442, 550, 684
BseGI	GGATG	4 cut(s)	132, 187, 544, 780
BseLI	CCNNNNNNNGG	5 cut(s)	80, 491, 566, 666, 696
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	571
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	3 cut(s)	258, 286, 659
BseYI	CCCAGC	1 cut(s)	675
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	6 cut(s)	142, 172, 305, 659, 689, 794
BshNI	GGYRCC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	370
BsiHKAI	GWGCWC	2 cut(s)	149, 612
BsiSI	CCGG	1 cut(s)	420
BslI	CCNNNNNNNGG	5 cut(s)	80, 491, 566, 666, 696
BsmAI	GTCTC	1 cut(s)	790
BsnI	GGCC	6 cut(s)	142, 172, 305, 659, 689, 794
Bso31I	GGTCTC	1 cut(s)	790
Bsp1286I	GDGCHC	5 cut(s)	87, 149, 612, 622, 723
Bsp1407I	TGTACA	1 cut(s)	239
BspACI	CCGC	3 cut(s)	71, 463, 509
BspANI	GGCC	6 cut(s)	142, 172, 305, 659, 689, 794
BspCNI	CTCAG	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	86, 418, 557
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	6 cut(s)	168, 210, 348, 397, 435, 476
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	790
BsrBI	CCGCTC	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	6 cut(s)	74, 259, 355, 442, 550, 684
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	6 cut(s)	261, 356, 486, 551, 685, 697
Bst4CI	ACNGT	3 cut(s)	227, 499, 521
Bst6I	CTCTTC	1 cut(s)	600
BstAUI	TGTACA	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	613
BstC8I	GCNNGC	3 cut(s)	409, 661, 745
BstDEI	CTNAG	2 cut(s)	174, 710
BstF5I	GGATG	4 cut(s)	132, 187, 544, 780
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	189, 584
BstMAI	GTCTC	1 cut(s)	790
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	6 cut(s)	67, 153, 669, 686, 727, 800
BstNI	CCWGG	6 cut(s)	261, 356, 486, 551, 685, 697
BstSCI	CCNGG	6 cut(s)	259, 354, 484, 549, 683, 695
BstSFI	CTRYAG	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	723
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	258, 286, 659
BstX2I	RGATCY	4 cut(s)	160, 340, 389, 427
BstYI	RGATCY	4 cut(s)	160, 340, 389, 427
Bsu15I	ATCGAT	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	710
BsuRI	GGCC	6 cut(s)	142, 172, 305, 659, 689, 794
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	4 cut(s)	132, 187, 544, 780
Cac8I	GCNNGC	3 cut(s)	409, 661, 745
CfoI	GCGC	2 cut(s)	189, 584
Cfr13I	GGNCC	5 cut(s)	304, 352, 657, 687, 793
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	2 cut(s)	178, 266
CsiI	ACCWGGT	1 cut(s)	695
Csp6I	GTAC	3 cut(s)	240, 495, 643
CviQI	GTAC	3 cut(s)	240, 495, 643
DdeI	CTNAG	2 cut(s)	174, 710
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	74
Eco24I	GRGCYC	3 cut(s)	87, 149, 622
Eco31I	GGTCTC	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	329, 452
Eco72I	CACGTG	1 cut(s)	613
Eco81I	CCTNAGG	1 cut(s)	710
EcoICRI	GAGCTC	1 cut(s)	147
EcoRII	CCWGG	6 cut(s)	259, 354, 484, 549, 683, 695
EcoT14I	CCWWGG	1 cut(s)	74
EcoT38I	GRGCYC	3 cut(s)	87, 149, 622
ErhI	CCWWGG	1 cut(s)	74
FaiI	YATR	5 cut(s)	534, 586, 588, 791, 798
FauNDI	CATATG	1 cut(s)	586
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	4 cut(s)	71, 272, 275, 673
FokI	GGATG	4 cut(s)	139, 194, 551, 787
FriOI	GRGCYC	3 cut(s)	87, 149, 622
Fsp4HI	GCNGC	4 cut(s)	71, 272, 275, 673
FspBI	CTAG	4 cut(s)	386, 630, 731, 764
GlaI	GCGC	2 cut(s)	188, 583
GluI	GCNGC	4 cut(s)	71, 272, 275, 673
GsaI	CCCAGC	1 cut(s)	679
HaeIII	GGCC	6 cut(s)	142, 172, 305, 659, 689, 794
HapII	CCGG	1 cut(s)	420
HgaI	GACGC	2 cut(s)	178, 266
HhaI	GCGC	2 cut(s)	189, 584
Hin6I	GCGC	2 cut(s)	187, 582
HinP1I	GCGC	2 cut(s)	187, 582
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	4 cut(s)	239, 458, 523, 533
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	6 cut(s)	65, 216, 223, 367, 432, 443
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	1 cut(s)	643
Hpy99I	CGWCG	3 cut(s)	227, 282, 581
HpyAV	CCTTC	2 cut(s)	100, 407
HpyCH4III	ACNGT	3 cut(s)	227, 499, 521
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	2 cut(s)	274, 290
HpyF10VI	GCNNNNNNNGC	6 cut(s)	67, 153, 669, 686, 727, 800
HpyF3I	CTNAG	2 cut(s)	174, 710
HpySE526I	ACGT	1 cut(s)	612
HspAI	GCGC	2 cut(s)	187, 582
Ksp22I	TGATCA	1 cut(s)	448
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	3 cut(s)	90, 321, 460
Lsp1109I	GCAGC	3 cut(s)	258, 286, 659
MabI	ACCWGGT	1 cut(s)	695
MaeI	CTAG	4 cut(s)	386, 630, 731, 764
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	3 cut(s)	94, 521, 703
MbiI	CCGCTC	1 cut(s)	463
MboII	GAAGA	2 cut(s)	335, 617
MflI	RGATCY	4 cut(s)	160, 340, 389, 427
MhlI	GDGCHC	5 cut(s)	87, 149, 612, 622, 723
MluCI	AATT	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	3 cut(s)	159, 246, 752
MnlI	CCTC	5 cut(s)	132, 331, 437, 536, 571
MseI	TTAA	1 cut(s)	808
MslI	CAYNNNNRTG	1 cut(s)	422
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	6 cut(s)	261, 356, 486, 551, 685, 697
MvaI	CCWGG	6 cut(s)	261, 356, 486, 551, 685, 697
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	6 cut(s)	67, 153, 669, 686, 727, 800
NdeI	CATATG	1 cut(s)	586
NlaIV	GGNNCC	3 cut(s)	86, 418, 557
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	521, 703
PciSI	GCTCTTC	1 cut(s)	600
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	72, 273, 276, 674
Ple19I	CGATCG	1 cut(s)	370
PleI	GAGTC	1 cut(s)	356
PmaCI	CACGTG	1 cut(s)	613
PmlI	CACGTG	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	613
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	6 cut(s)	259, 354, 484, 549, 683, 695
PspCI	CACGTG	1 cut(s)	613
PspFI	CCCAGC	1 cut(s)	675
PspGI	CCWGG	6 cut(s)	259, 354, 484, 549, 683, 695
PspN4I	GGNNCC	3 cut(s)	86, 418, 557
PspPI	GGNCC	5 cut(s)	304, 352, 657, 687, 793
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	4 cut(s)	160, 340, 389, 427
PvuI	CGATCG	1 cut(s)	370
RsaI	GTAC	3 cut(s)	241, 496, 644
RsaNI	GTAC	3 cut(s)	240, 495, 643
RseI	CAYNNNNRTG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	808
SatI	GCNGC	4 cut(s)	71, 272, 275, 673
Sau96I	GGNCC	5 cut(s)	304, 352, 657, 687, 793
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	6 cut(s)	261, 356, 486, 551, 685, 697
SduI	GDGCHC	5 cut(s)	87, 149, 612, 622, 723
SetI	ASST	9 cut(s)	25, 149, 351, 448, 547, 615, 698, 716, 749
SexAI	ACCWGGT	1 cut(s)	695
SfcI	CTRYAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	3 cut(s)	71, 463, 509
SspMI	CTAG	4 cut(s)	386, 630, 731, 764
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	6 cut(s)	259, 354, 484, 549, 683, 695
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	3 cut(s)	227, 499, 521
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	3 cut(s)	246, 480, 563
TasI	AATT	1 cut(s)	25
TatI	WGTACW	1 cut(s)	239
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	808
Tru9I	TTAA	1 cut(s)	808
TseFI	GTSAC	2 cut(s)	521, 703
TseI	GCWGC	3 cut(s)	271, 274, 672
Tsp45I	GTSAC	2 cut(s)	521, 703
VpaK11BI	GGWCC	1 cut(s)	352
XspI	CTAG	4 cut(s)	386, 630, 731, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.