Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Reverse (-)

37863650 .. 37864582

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024649

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGGCTCTGCTATGATCTCCTTACCAACGGGTACTACACGACGCGGCTGTGGATTGGGACACCGCCTCAGATGTTCGCTCTGATTGTGGATACGGGGAGTAGAGAATTAAGGTCACCATATTGGGATTTGGGACACCGCCACCATCAAATTTGGCAGCTGTGGCGGAGAAGGCGCTGCCAATACCGGCAACAGCCTATTCGGTCTCCTTCCGAAGAGGGTGAGTGGAGACGGAGCAGCTGCCGTGGGCGTCCCAGTCGCACTCGTGGTAGAGGACCAAGTTATCAGAGGAGCAGCGGAAGTCGACGACCTCAGAGGCGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

109

Amino Acids

13.12

Weight (kDa)

11.56

Isoelectric Point (pI)

99.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	304
AccII	CGCG	1 cut(s)	46
AciI	CCGC	5 cut(s)	46, 65, 139, 166, 297
AcsI	RAATTY	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	250
AfaI	GTAC	1 cut(s)	35
AluBI	AGCT	2 cut(s)	160, 240
AluI	AGCT	2 cut(s)	160, 240
Alw26I	GTCTC	2 cut(s)	210, 223
ApeKI	GCWGC	5 cut(s)	157, 177, 237, 240, 294
ApoI	RAATTY	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	177, 321
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	108, 233
AvaII	GGWCC	1 cut(s)	275
BauI	CACGAG	1 cut(s)	264
BbvI	GCAGC	5 cut(s)	164, 169, 227, 249, 306
BccI	CCATC	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	210, 223
BfoI	RGCGCY	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	6 cut(s)	47, 158, 178, 238, 241, 295
BlsI	GCNGC	6 cut(s)	48, 159, 179, 239, 242, 296
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmrI	ACTGGG	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	83, 326
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	5 cut(s)	164, 169, 227, 249, 306
Bsh1236I	CGCG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	187
BslFI	GGGAC	3 cut(s)	73, 147, 237
BsmAI	GTCTC	2 cut(s)	210, 223
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	3 cut(s)	73, 147, 237
Bso31I	GGTCTC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	5 cut(s)	46, 65, 139, 166, 297
BspCNI	CTCAG	2 cut(s)	82, 325
BspFNI	CGCG	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	1 cut(s)	250
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	69, 312
BstDSI	CCRYGG	1 cut(s)	244
BstEII	GGTNACC	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 321
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	210, 223
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 172
BstPI	GGTNACC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	5 cut(s)	164, 169, 227, 249, 306
BsuI	GTATCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	244
CfoI	GCGC	2 cut(s)	177, 321
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	275
CseI	GACGC	2 cut(s)	52, 239
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	5 cut(s)	7, 49, 160, 196, 240
CviKI_1	RGCY	5 cut(s)	7, 49, 160, 196, 240
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	69, 312
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	114
EcoO65I	GGTNACC	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	223
FaiI	YATR	2 cut(s)	15, 121
FaqI	GGGAC	3 cut(s)	73, 147, 237
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	6 cut(s)	47, 158, 178, 238, 241, 295
Fsp4HI	GCNGC	6 cut(s)	47, 158, 178, 238, 241, 295
GlaI	GCGC	2 cut(s)	176, 320
GluI	GCNGC	6 cut(s)	47, 158, 178, 238, 241, 295
HaeII	RGCGCY	1 cut(s)	178
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	2 cut(s)	52, 239
HhaI	GCGC	2 cut(s)	177, 321
Hin1I	GRCGYC	1 cut(s)	250
Hin6I	GCGC	2 cut(s)	175, 319
HinP1I	GCGC	2 cut(s)	175, 319
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	108, 233
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	5 cut(s)	72, 84, 214, 288, 315
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	2 cut(s)	46, 309
HpyAV	CCTTC	2 cut(s)	165, 219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 172
HpyF3I	CTNAG	2 cut(s)	69, 312
Hsp92I	GRCGYC	1 cut(s)	250
HspAI	GCGC	2 cut(s)	175, 319
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	234, 291
LpnPI	CCDG	2 cut(s)	200, 268
Lsp1109I	GCAGC	5 cut(s)	164, 169, 227, 249, 306
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	227
MluCI	AATT	2 cut(s)	107, 150
MnlI	CCTC	6 cut(s)	78, 211, 266, 282, 309, 321
MseI	TTAA	1 cut(s)	110
MspA1I	CMGCKG	3 cut(s)	160, 240, 297
MspI	CCGG	1 cut(s)	187
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	163, 172
NdeII	GATC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	114
PkrI	GCNGC	6 cut(s)	48, 159, 179, 239, 242, 296
PspEI	GGTNACC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	275
PvuII	CAGCTG	2 cut(s)	160, 240
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SalI	GTCGAC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	6 cut(s)	47, 158, 178, 238, 241, 295
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	275
SetI	ASST	4 cut(s)	116, 162, 242, 313
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	2 cut(s)	107, 150
SsiI	CCGC	5 cut(s)	46, 65, 139, 166, 297
TaqI	TCGA	1 cut(s)	304
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	107, 150
TauI	GCSGC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	5 cut(s)	157, 177, 237, 240, 294
Tsp45I	GTSAC	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.