Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Reverse (-)

29372773 .. 29374878

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGAAGAACAACGCGTCGTTGAAATCGGTGGACGAGTTCTTGAAGCGGTGCCAACAATCCGGCGATGCTGCCTACTGCGCTCCGAGATCGGTGTTGGAGCGTCTCGAGGATCGAAAACCCGTACTCAAGCTCGGATTTTCCTCTCCGACCTTCGAAGCGCTTCCCTACGGGAGGACCTCGCCCCCACATCTGATTTTATTGCTTACAAAACCAAGAACCCACCATCGAATATGCGGGAAGAAAAATAGGGGAGAGCCACGACAATCTCCACCACCTCGCAATGACGTCGTCCTCCGCTGCTTCTCGATTGGGTTTGGGTATAAGGATCGCTTCTTCCTCCACCGCCGAGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCACCGGCCGGAAGGACCGCCATAGCAAGGTCTACACGGCTAAAGGCCCCGGGGACCACCACCTGCGGCTCGCCACCCACACCGCCATTGAATTCTACGATGCGCAAGACCGGCTCGAATACGACCGACCCGGCAAGGTCATCGATTGGGTCATCAAGAAAGCCAAGGCCGCAATCGACGAGCTCGACGAGCTGCCGCCATGGAACCCGAACTCAATTTCTGTTCGGACAACATCTTCTCCGACGGTGTCGATATCCGCCGCGCAGACAAGCAGAACGCGAGCCTCCATTTCTCGATTGTGGAGGCTCCGAGTTCTTTGTCTGCTAATCGATGAGGCGCAATGGTGGGTAGCAGTGGAGTGGAGGAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

252

Amino Acids

28.91

Weight (kDa)

10.01

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	131 - 210	5.6e-22	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	456
AatII	GACGTC	1 cut(s)	291
Acc16I	TGCGCA	1 cut(s)	489
Acc36I	ACCTGC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	3 cut(s)	17, 647, 664
AclWI	GGATC	2 cut(s)	120, 336
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	126
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	3 cut(s)	174, 393, 412
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	25, 46, 476
AluBI	AGCT	4 cut(s)	133, 568, 577, 753
AluI	AGCT	4 cut(s)	133, 568, 577, 753
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	120, 336
Ama87I	CYCGRG	3 cut(s)	107, 366, 434
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	5 cut(s)	370, 384, 391, 430, 552
ApeKI	GCWGC	3 cut(s)	71, 300, 577
ApoI	RAATTY	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	5 cut(s)	83, 163, 490, 649, 724
AspS9I	GGNCC	5 cut(s)	177, 384, 400, 431, 439
AsuC2I	CCSGG	3 cut(s)	435, 436, 516
AsuII	TTCGAA	1 cut(s)	156
AvaI	CYCGRG	3 cut(s)	107, 366, 434
AvaII	GGWCC	3 cut(s)	177, 400, 439
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	58, 287, 564
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	438
BcgI	CGANNNNNNTGC	4 cut(s)	271, 305, 508, 542
BcnI	CCSGG	3 cut(s)	435, 436, 516
BcoDI	GTCTC	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	456
BisI	GCNGC	7 cut(s)	72, 301, 452, 555, 578, 581, 645
BlsI	GCNGC	7 cut(s)	73, 302, 453, 556, 579, 582, 646
Bme1390I	CCNGG	3 cut(s)	435, 436, 516
Bme18I	GGWCC	3 cut(s)	177, 400, 439
BmeT110I	CYCGRG	3 cut(s)	107, 366, 434
BmgT120I	GGNCC	5 cut(s)	177, 384, 400, 431, 439
BmiI	GGNNCC	5 cut(s)	53, 433, 440, 590, 692
BmrFI	CCNGG	3 cut(s)	435, 436, 516
BmsI	GCATC	2 cut(s)	58, 475
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	3 cut(s)	435, 436, 516
Bsa29I	ATCGAT	2 cut(s)	528, 714
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	5 cut(s)	433, 434, 435, 549, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 393, 412
Bse118I	RCCGGY	2 cut(s)	389, 495
Bse3DI	GCAATG	2 cut(s)	289, 731
BseCI	ATCGAT	2 cut(s)	528, 714
BseDI	CCNNGG	5 cut(s)	433, 434, 435, 549, 584
BseLI	CCNNNNNNNGG	3 cut(s)	174, 393, 412
BseMI	GCAATG	2 cut(s)	289, 731
BseX3I	CGGCCG	1 cut(s)	391
BseXI	GCAGC	3 cut(s)	58, 287, 564
Bsh1236I	CGCG	3 cut(s)	17, 647, 664
Bsh1285I	CGRYCG	2 cut(s)	394, 511
BshFI	GGCC	5 cut(s)	372, 386, 393, 432, 554
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	2 cut(s)	528, 714
BsiEI	CGRYCG	2 cut(s)	394, 511
BsiHKAI	GWGCWC	1 cut(s)	570
BsiHKCI	CYCGRG	3 cut(s)	107, 366, 434
BsiSI	CCGG	6 cut(s)	63, 390, 394, 435, 496, 516
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	3 cut(s)	174, 393, 412
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	5 cut(s)	372, 386, 393, 432, 554
BsoBI	CYCGRG	3 cut(s)	107, 366, 434
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp143I	GATC	3 cut(s)	89, 112, 328
Bsp19I	CCATGG	1 cut(s)	584
BspANI	GGCC	5 cut(s)	372, 386, 393, 432, 554
BspDI	ATCGAT	2 cut(s)	528, 714
BspFNI	CGCG	3 cut(s)	17, 647, 664
BspLI	GGNNCC	5 cut(s)	53, 433, 440, 590, 692
BspMI	ACCTGC	1 cut(s)	456
BspPI	GGATC	2 cut(s)	120, 336
BspT104I	TTCGAA	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	51
BsrDI	GCAATG	2 cut(s)	289, 731
BsrFI	RCCGGY	2 cut(s)	389, 495
BssAI	RCCGGY	2 cut(s)	389, 495
BssECI	CCNNGG	5 cut(s)	433, 434, 435, 549, 584
BssMI	GATC	3 cut(s)	89, 112, 328
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	549, 584
Bst4CI	ACNGT	1 cut(s)	631
BstACI	GRCGYC	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	456, 666
BstDEI	CTNAG	1 cut(s)	380
BstDSI	CCRYGG	1 cut(s)	584
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstFNI	CGCG	3 cut(s)	17, 647, 664
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	5 cut(s)	83, 163, 490, 649, 724
BstKTI	GATC	3 cut(s)	92, 115, 331
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	3 cut(s)	89, 112, 328
BstMCI	CGRYCG	2 cut(s)	394, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 496, 554, 574
BstSCI	CCNGG	3 cut(s)	433, 434, 514
BstUI	CGCG	3 cut(s)	17, 647, 664
BstV1I	GCAGC	3 cut(s)	58, 287, 564
BstZI	CGGCCG	1 cut(s)	391
Bsu15I	ATCGAT	2 cut(s)	528, 714
BsuRI	GGCC	5 cut(s)	372, 386, 393, 432, 554
BsuTUI	ATCGAT	2 cut(s)	528, 714
BtgI	CCRYGG	1 cut(s)	584
BtgZI	GCGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	1 cut(s)	744
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	2 cut(s)	456, 666
CfoI	GCGC	5 cut(s)	83, 163, 490, 649, 724
Cfr10I	RCCGGY	2 cut(s)	389, 495
Cfr13I	GGNCC	5 cut(s)	177, 384, 400, 431, 439
Cfr9I	CCCGGG	1 cut(s)	434
ClaI	ATCGAT	2 cut(s)	528, 714
CseI	GACGC	2 cut(s)	6, 92
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	1 cut(s)	585
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	3 cut(s)	91, 114, 330
DpnII	GATC	3 cut(s)	89, 112, 328
EaeI	YGGCCR	1 cut(s)	391
EagI	CGGCCG	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	631
Ecl136II	GAGCTC	1 cut(s)	568
EclXI	CGGCCG	1 cut(s)	391
Eco130I	CCWWGG	2 cut(s)	549, 584
Eco24I	GRGCYC	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	639
Eco47I	GGWCC	3 cut(s)	177, 400, 439
Eco47III	AGCGCT	1 cut(s)	162
Eco52I	CGGCCG	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	568
Eco88I	CYCGRG	3 cut(s)	107, 366, 434
EcoICRI	GAGCTC	1 cut(s)	568
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoO109I	RGGNCCY	2 cut(s)	177, 431
EcoRI	GAATTC	1 cut(s)	476
EcoRV	GATATC	1 cut(s)	639
EcoT14I	CCWWGG	2 cut(s)	549, 584
EcoT38I	GRGCYC	1 cut(s)	570
ErhI	CCWWGG	2 cut(s)	549, 584
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	1 cut(s)	588
FaiI	YATR	4 cut(s)	235, 324, 408, 586
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	1 cut(s)	584
FauI	CCCGC	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	7 cut(s)	72, 301, 452, 555, 578, 581, 645
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	7 cut(s)	72, 301, 452, 555, 578, 581, 645
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	5 cut(s)	82, 162, 489, 648, 723
GluI	GCNGC	7 cut(s)	72, 301, 452, 555, 578, 581, 645
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	5 cut(s)	372, 386, 393, 432, 554
HapII	CCGG	6 cut(s)	63, 390, 394, 435, 496, 516
HgaI	GACGC	2 cut(s)	6, 92
HhaI	GCGC	5 cut(s)	83, 163, 490, 649, 724
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	588
Hin6I	GCGC	5 cut(s)	81, 161, 488, 647, 722
HinP1I	GCGC	5 cut(s)	81, 161, 488, 647, 722
HpaII	CCGG	6 cut(s)	63, 390, 394, 435, 496, 516
Hpy166II	GTNNAC	2 cut(s)	34, 418
Hpy188I	TCNGA	7 cut(s)	87, 137, 150, 195, 612, 627, 695
Hpy188III	TCNNGA	5 cut(s)	43, 107, 307, 541, 678
Hpy8I	GTNNAC	2 cut(s)	34, 418
Hpy99I	CGWCG	5 cut(s)	22, 293, 566, 575, 631
HpyAV	CCTTC	2 cut(s)	163, 391
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4IV	ACGT	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 496, 554, 574
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	588
HspAI	GCGC	5 cut(s)	81, 161, 488, 647, 722
Kzo9I	GATC	3 cut(s)	89, 112, 328
LmnI	GCTCC	4 cut(s)	88, 100, 696, 750
LpnPI	CCDG	8 cut(s)	76, 403, 407, 448, 461, 509, 529, 739
Lsp1109I	GCAGC	3 cut(s)	58, 287, 564
LweI	GCATC	2 cut(s)	58, 475
MaeII	ACGT	1 cut(s)	288
MalI	GATC	3 cut(s)	91, 114, 330
MboI	GATC	3 cut(s)	89, 112, 328
MboII	GAAGA	4 cut(s)	19, 253, 328, 612
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	2 cut(s)	476, 600
MluI	ACGCGT	1 cut(s)	15
MmeI	TCCRAC	3 cut(s)	78, 173, 650
MroXI	GAANNNNTTC	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	6 cut(s)	63, 390, 394, 435, 496, 516
MspR9I	CCNGG	3 cut(s)	435, 436, 516
MvnI	CGCG	3 cut(s)	17, 647, 664
MwoI	GCNNNNNNNGC	4 cut(s)	80, 496, 554, 574
NciI	CCSGG	3 cut(s)	435, 436, 516
NcoI	CCATGG	1 cut(s)	584
NdeII	GATC	3 cut(s)	89, 112, 328
NlaIII	CATG	1 cut(s)	588
NlaIV	GGNNCC	5 cut(s)	53, 433, 440, 590, 692
NmeAIII	GCCGAG	1 cut(s)	374
NsbI	TGCGCA	1 cut(s)	489
NspV	TTCGAA	1 cut(s)	156
PaeR7I	CTCGAG	2 cut(s)	107, 366
PaqCI	CACCTGC	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	2 cut(s)	567, 570
PdmI	GAANNNNTTC	1 cut(s)	162
PflFI	GACNNNGTC	2 cut(s)	290, 631
PkrI	GCNGC	7 cut(s)	73, 302, 453, 556, 579, 582, 646
PpuMI	RGGWCCY	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	177
PspN4I	GGNNCC	5 cut(s)	53, 433, 440, 590, 692
PspPI	GGNCC	5 cut(s)	177, 384, 400, 431, 439
PspPPI	RGGWCCY	1 cut(s)	177
PspXI	VCTCGAGB	1 cut(s)	366
PsyI	GACNNNGTC	2 cut(s)	290, 631
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	570
SatI	GCNGC	7 cut(s)	72, 301, 452, 555, 578, 581, 645
Sau3AI	GATC	3 cut(s)	89, 112, 328
Sau96I	GGNCC	5 cut(s)	177, 384, 400, 431, 439
ScrFI	CCNGG	3 cut(s)	435, 436, 516
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	2 cut(s)	58, 475
Sfr274I	CTCGAG	2 cut(s)	107, 366
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	3 cut(s)	177, 400, 439
SlaI	CTCGAG	2 cut(s)	107, 366
SmaI	CCCGGG	1 cut(s)	436
SmlI	CTYRAG	3 cut(s)	107, 128, 366
SmoI	CTYRAG	3 cut(s)	107, 128, 366
Sse9I	AATT	2 cut(s)	476, 600
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	3 cut(s)	433, 434, 514
StyI	CCWWGG	2 cut(s)	549, 584
TaaI	ACNGT	1 cut(s)	631
TaiI	ACGT	1 cut(s)	291
TaqII	GACCGA	1 cut(s)	525
TasI	AATT	2 cut(s)	476, 600
TauI	GCSGC	4 cut(s)	454, 557, 583, 647
TscAI	CASTG	1 cut(s)	744
TseI	GCWGC	3 cut(s)	71, 300, 577
TspMI	CCCGGG	1 cut(s)	434
TspRI	CASTG	1 cut(s)	744
Tth111I	GACNNNGTC	2 cut(s)	290, 631
VpaK11BI	GGWCC	3 cut(s)	177, 400, 439
XagI	CCTNNNNNAGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	476
XhoI	CTCGAG	2 cut(s)	107, 366
XmaI	CCCGGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	162
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.