Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Forward (+)

39196964 .. 39197786

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG177500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAGTTTCCGGATTTCGAGAGAAATCAAGCCTAGAAACAGCACCAAGACTGGCGCCGCGCTGGAGAGGGAAGACACTGACATCCTCTCTCGAGTGTCAATGGCAAAGAACGACGCGTTCTTGGGATCAGTGGGCGAGTTCTTGAAGCGGTGCCAGCAATCCGGCGAGTCTTTGACGATCGAGTCTCCAGAGATCGGAGCCAAACGTGCACTTGAGGCTCTACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.3

Weight (kDa)

9.03

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	181
AccB1I	GGYRCC	2 cut(s)	53, 150
AccII	CGCG	2 cut(s)	59, 116
AccIII	TCCGGA	1 cut(s)	9
AciI	CCGC	2 cut(s)	57, 148
AclWI	GGATC	1 cut(s)	133
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	189
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	9
ApaLI	GTGCAC	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	56, 61
AvaI	CYCGRG	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	211
BanI	GGYRCC	2 cut(s)	53, 150
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	57
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	90
BmiI	GGNNCC	3 cut(s)	55, 152, 199
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	2 cut(s)	83, 171
BsaHI	GRCGYC	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	9
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	211
Bsh1236I	CGCG	2 cut(s)	59, 116
Bsh1285I	CGRYCG	1 cut(s)	180
BshNI	GGYRCC	2 cut(s)	53, 150
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	10, 162
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp13I	TCCGGA	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	125, 177, 192
BspACI	CCGC	2 cut(s)	57, 148
BspEI	TCCGGA	1 cut(s)	9
BspFNI	CGCG	2 cut(s)	59, 116
BspLI	GGNNCC	3 cut(s)	55, 152, 199
BspPI	GGATC	1 cut(s)	133
BspT107I	GGYRCC	2 cut(s)	53, 150
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	3 cut(s)	125, 177, 192
BssNI	GRCGYC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	2 cut(s)	59, 116
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	56, 61
BstKTI	GATC	3 cut(s)	128, 180, 195
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	3 cut(s)	125, 177, 192
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 206, 215
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	2 cut(s)	59, 116
BstV2I	GAAGAC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	75, 135
Cac8I	GCNNGC	1 cut(s)	155
CfoI	GCGC	2 cut(s)	56, 61
CseI	GACGC	1 cut(s)	122
CviJI	RGCY	3 cut(s)	31, 200, 218
CviKI_1	RGCY	3 cut(s)	31, 200, 218
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	3 cut(s)	127, 179, 194
DpnII	GATC	3 cut(s)	125, 177, 192
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	2 cut(s)	55, 60
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	2 cut(s)	83, 171
HaeII	RGCGCY	1 cut(s)	57
HapII	CCGG	2 cut(s)	10, 162
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	2 cut(s)	56, 61
Hin1I	GRCGYC	1 cut(s)	54
Hin6I	GCGC	2 cut(s)	54, 59
HinP1I	GCGC	2 cut(s)	54, 59
HinfI	GANTC	2 cut(s)	167, 182
HpaII	CCGG	2 cut(s)	10, 162
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	5 cut(s)	10, 18, 90, 142, 188
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 206, 215
HpySE526I	ACGT	1 cut(s)	205
Hsp92I	GRCGYC	1 cut(s)	54
HspAI	GCGC	2 cut(s)	54, 59
KasI	GGCGCC	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	125, 177, 192
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	6 cut(s)	23, 36, 47, 167, 175, 201
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	205
MalI	GATC	3 cut(s)	127, 179, 194
MboI	GATC	3 cut(s)	125, 177, 192
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	211
MluI	ACGCGT	1 cut(s)	114
Mly113I	GGCGCC	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	176, 191
MnlI	CCTC	3 cut(s)	60, 95, 208
MroI	TCCGGA	1 cut(s)	9
MspI	CCGG	2 cut(s)	10, 162
MteI	GCGCNGCGC	1 cut(s)	57
MvnI	CGCG	2 cut(s)	59, 116
MwoI	GCNNNNNNNGC	3 cut(s)	154, 206, 215
NarI	GGCGCC	1 cut(s)	54
NdeII	GATC	3 cut(s)	125, 177, 192
NlaIV	GGNNCC	3 cut(s)	55, 152, 199
PaeR7I	CTCGAG	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	58
Ple19I	CGATCG	1 cut(s)	180
PleI	GAGTC	2 cut(s)	175, 190
PluTI	GGCGCC	1 cut(s)	57
PpsI	GAGTC	2 cut(s)	175, 190
PspN4I	GGNNCC	3 cut(s)	55, 152, 199
PvuI	CGATCG	1 cut(s)	180
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	125, 177, 192
SchI	GAGTC	2 cut(s)	176, 191
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	1 cut(s)	208
SfoI	GGCGCC	1 cut(s)	55
Sfr274I	CTCGAG	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	90, 212
SmoI	CTYRAG	2 cut(s)	90, 212
SsiI	CCGC	2 cut(s)	57, 148
SspDI	GGCGCC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	3 cut(s)	17, 91, 180
TauI	GCSGC	1 cut(s)	59
TscAI	CASTG	2 cut(s)	82, 135
TspRI	CASTG	2 cut(s)	82, 135
VneI	GTGCAC	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	90
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.