Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001238.1

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Reverse (-)

9295 .. 14736

Gene Structure 5442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001238.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgaataataagcttctcctcctccaccacacagacatagacctccttgagagtgtgaatggcgaagaacaatgcgtcattgactcattgggatcggtggacgagttcttgaagcggtgccaacagttcggcgatgccgcctactctactttgagatcaatgttgcagcgtctcaaggatccaaaaacccaaactcaagctctgaacttcctctccgacctccaaaagcacttccctattggaggacctcgcctgcctcggagcttactccgatctcttctttttcatcaccgatggcaaagccgatatcttcttctattagagtttgaaatgataaaaatgtcatatagtttttcactggataaaaaacttctcctcctccaccacacagacatagacctgcttgagagtgtgaatggcgaagaacaatgcgtcattgactcattgggatcggtggacgagttcttgaagcggtgccaacagttcggcgatgccgcctactctactttgagatcaatgttgcagcgtctcaaggatccaaaaacccaaactcaagctctgaacttcctctccgacctccaaaagcacttccctattgtaggacctcgcctgcctcggagcttactccgatctcttctttttcatcaccgacggcaaagccgatatcttcttctgcagtcaggggcggattcaggattgaaaccttggacgggcttcgatgaactcggagtccaaaagataatacctgatacgacatttatcagaaaatggaaacacaaaattgaagcaattgtcattgcacatggccatgaagatcacattgaacttcgaagacggcctgttttccttagtcttttctaccaactggacagggcatgcttgccttctctccatcccataggggtttcaccgttgctgcgttctcttcttccgatgcgatttcgatcggtgatatattctcttcttccgattcggatccgattgcgttctcttctccggatttggatcgggtcgtggccgcgtcatcttcttcagccactggtcaatgacctagtcacactcgtggtagaggtccaagtttttggtggagcagtggaaggcgacgacctcagaggcgcagttgtcgcagatcgaaggtgcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008409 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009914 GO:0009942 GO:0009987 GO:0010154 GO:0010817 GO:0016043 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2 Myb_DNA-bind_4 RMMBL

Protein Analysis

381

Amino Acids

43.98

Weight (kDa)

9.38

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	408
AccB1I	GGYRCC	2 cut(s)	117, 474
AccII	CGCG	1 cut(s)	1021
AccIII	TCCGGA	1 cut(s)	996
AciI	CCGC	6 cut(s)	115, 138, 472, 495, 686, 1019
AclWI	GGATC	9 cut(s)	100, 173, 186, 457, 530, 543, 970, 983, 1013
AcoI	YGGCCR	2 cut(s)	805, 1016
AcuI	CTGAAG	1 cut(s)	1016
AfiI	CCNNNNNNNGG	3 cut(s)	242, 599, 710
AgsI	TTSAA	6 cut(s)	112, 329, 469, 700, 785, 824
AleI	CACNNNNGTG	1 cut(s)	1061
AloI	GAACNNNNNNTCC	6 cut(s)	197, 229, 554, 586, 714, 746
AluBI	AGCT	5 cut(s)	13, 200, 264, 557, 621
AluI	AGCT	5 cut(s)	13, 200, 264, 557, 621
Alw26I	GTCTC	2 cut(s)	176, 533
AlwI	GGATC	9 cut(s)	100, 173, 186, 457, 530, 543, 970, 983, 1013
AlwNI	CAGNNNCTG	1 cut(s)	1039
Aor13HI	TCCGGA	1 cut(s)	996
AoxI	GGCC	3 cut(s)	805, 836, 1016
ApeKI	GCWGC	3 cut(s)	166, 523, 916
AspLEI	GCGC	1 cut(s)	1118
AspS9I	GGNCC	3 cut(s)	245, 602, 1072
AsuHPI	GGTGA	4 cut(s)	281, 638, 900, 961
AsuII	TTCGAA	1 cut(s)	829
AvaII	GGWCC	3 cut(s)	245, 602, 1072
BalI	TGGCCA	1 cut(s)	807
BamHI	GGATCC	3 cut(s)	178, 535, 975
BanI	GGYRCC	2 cut(s)	117, 474
BauI	CACGAG	1 cut(s)	1061
BbsI	GAAGAC	1 cut(s)	838
BbvI	GCAGC	3 cut(s)	178, 535, 903
BccI	CCATC	2 cut(s)	288, 900
BceAI	ACGGC	2 cut(s)	668, 851
BcoDI	GTCTC	2 cut(s)	176, 533
BfaI	CTAG	1 cut(s)	1052
BfmI	CTRYAG	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	6 cut(s)	138, 167, 495, 524, 917, 1019
BlsI	GCNGC	6 cut(s)	139, 168, 496, 525, 918, 1020
Bme18I	GGWCC	3 cut(s)	245, 602, 1072
BmgT120I	GGNCC	3 cut(s)	245, 602, 1072
BmiI	GGNNCC	5 cut(s)	119, 180, 476, 537, 977
BmsI	GCATC	3 cut(s)	124, 481, 924
BpiI	GAAGAC	1 cut(s)	838
Bpu14I	TTCGAA	1 cut(s)	829
BpuEI	CTTGAG	6 cut(s)	68, 158, 180, 425, 515, 537
BsaBI	GATNNNNATC	3 cut(s)	943, 974, 1004
BsaJI	CCNNGG	3 cut(s)	257, 614, 704
BsaWI	WCCGGW	1 cut(s)	996
BsaXI	ACNNNNNCTCC	6 cut(s)	197, 227, 360, 390, 554, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 599, 710
Bse1I	ACTGG	3 cut(s)	363, 870, 1044
Bse3DI	GCAATG	1 cut(s)	795
Bse8I	GATNNNNATC	3 cut(s)	943, 974, 1004
BseAI	TCCGGA	1 cut(s)	996
BseDI	CCNNGG	3 cut(s)	257, 614, 704
BseGI	GGATG	1 cut(s)	892
BseJI	GATNNNNATC	3 cut(s)	943, 974, 1004
BseLI	CCNNNNNNNGG	3 cut(s)	242, 599, 710
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	1 cut(s)	1123
BseNI	ACTGG	3 cut(s)	363, 870, 1044
BseRI	GAGGAG	4 cut(s)	8, 11, 365, 368
BseXI	GCAGC	3 cut(s)	178, 535, 903
Bsh1236I	CGCG	1 cut(s)	1021
Bsh1285I	CGRYCG	1 cut(s)	947
BshFI	GGCC	3 cut(s)	807, 838, 1018
BshNI	GGYRCC	2 cut(s)	117, 474
BsiEI	CGRYCG	1 cut(s)	947
BsiSI	CCGG	1 cut(s)	997
BslI	CCNNNNNNNGG	3 cut(s)	242, 599, 710
BsmAI	GTCTC	2 cut(s)	176, 533
BsmBI	CGTCTC	2 cut(s)	176, 533
BsnI	GGCC	3 cut(s)	807, 838, 1018
Bsp119I	TTCGAA	1 cut(s)	829
Bsp13I	TCCGGA	1 cut(s)	996
BspACI	CCGC	6 cut(s)	115, 138, 472, 495, 686, 1019
BspANI	GGCC	3 cut(s)	807, 838, 1018
BspCNI	CTCAG	1 cut(s)	1122
BspEI	TCCGGA	1 cut(s)	996
BspFNI	CGCG	1 cut(s)	1021
BspLI	GGNNCC	5 cut(s)	119, 180, 476, 537, 977
BspMAI	CTGCAG	1 cut(s)	678
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	9 cut(s)	100, 173, 186, 457, 530, 543, 970, 983, 1013
BspT104I	TTCGAA	1 cut(s)	829
BspT107I	GGYRCC	2 cut(s)	117, 474
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	3 cut(s)	363, 870, 1044
BssECI	CCNNGG	3 cut(s)	257, 614, 704
BssSI	CACGAG	1 cut(s)	1061
BssT1I	CCWWGG	1 cut(s)	704
Bst2BI	CACGAG	1 cut(s)	1061
Bst4CI	ACNGT	3 cut(s)	126, 483, 912
Bst6I	CTCTTC	5 cut(s)	282, 639, 930, 966, 996
BstBI	TTCGAA	1 cut(s)	829
BstC8I	GCNNGC	4 cut(s)	254, 611, 877, 881
BstDEI	CTNAG	2 cut(s)	848, 1109
BstENI	CCTNNNNNAGG	2 cut(s)	240, 597
BstF5I	GGATG	1 cut(s)	892
BstFNI	CGCG	1 cut(s)	1021
BstHHI	GCGC	1 cut(s)	1118
BstMAI	GTCTC	2 cut(s)	176, 533
BstMCI	CGRYCG	1 cut(s)	947
BstMWI	GCNNNNNNNGC	1 cut(s)	1124
BstNSI	RCATGY	1 cut(s)	879
BstSFI	CTRYAG	1 cut(s)	674
BstUI	CGCG	1 cut(s)	1021
BstV1I	GCAGC	3 cut(s)	178, 535, 903
BstV2I	GAAGAC	1 cut(s)	838
BstX2I	RGATCY	3 cut(s)	178, 535, 975
BstXI	CCANNNNNNTGG	1 cut(s)	1082
BstYI	RGATCY	3 cut(s)	178, 535, 975
BsuRI	GGCC	3 cut(s)	807, 838, 1018
BtgZI	GCGATG	2 cut(s)	147, 504
BtsCI	GGATG	1 cut(s)	892
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	3 cut(s)	356, 1037, 1098
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	4 cut(s)	254, 611, 877, 881
CaiI	CAGNNNCTG	1 cut(s)	1039
CfoI	GCGC	1 cut(s)	1118
Cfr13I	GGNCC	3 cut(s)	245, 602, 1072
CseI	GACGC	5 cut(s)	64, 158, 421, 515, 1010
CviAII	CATG	3 cut(s)	803, 809, 876
DdeI	CTNAG	2 cut(s)	848, 1109
EaeI	YGGCCR	2 cut(s)	805, 1016
Eam1104I	CTCTTC	5 cut(s)	282, 639, 930, 966, 996
EarI	CTCTTC	5 cut(s)	282, 639, 930, 966, 996
EciI	GGCGGA	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	704
Eco32I	GATATC	2 cut(s)	308, 665
Eco47I	GGWCC	3 cut(s)	245, 602, 1072
Eco57I	CTGAAG	1 cut(s)	1016
EcoNI	CCTNNNNNAGG	2 cut(s)	240, 597
EcoO109I	RGGNCCY	2 cut(s)	245, 602
EcoRV	GATATC	2 cut(s)	308, 665
EcoT14I	CCWWGG	1 cut(s)	704
ErhI	CCWWGG	1 cut(s)	704
Esp3I	CGTCTC	2 cut(s)	176, 533
FaeI	CATG	3 cut(s)	806, 812, 879
FaiI	YATR	9 cut(s)	38, 346, 348, 395, 804, 810, 877, 899, 955
FatI	CATG	3 cut(s)	802, 808, 875
Fnu4HI	GCNGC	6 cut(s)	138, 167, 495, 524, 917, 1019
FokI	GGATG	1 cut(s)	879
Fsp4HI	GCNGC	6 cut(s)	138, 167, 495, 524, 917, 1019
FspBI	CTAG	1 cut(s)	1052
GlaI	GCGC	1 cut(s)	1117
GluI	GCNGC	6 cut(s)	138, 167, 495, 524, 917, 1019
HaeIII	GGCC	3 cut(s)	807, 838, 1018
HapII	CCGG	1 cut(s)	997
HgaI	GACGC	5 cut(s)	64, 158, 421, 515, 1010
HhaI	GCGC	1 cut(s)	1118
Hin1II	CATG	3 cut(s)	806, 812, 879
Hin6I	GCGC	1 cut(s)	1116
HinP1I	GCGC	1 cut(s)	1116
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	5 cut(s)	83, 440, 689, 729, 970
HpaII	CCGG	1 cut(s)	997
HphI	GGTGA	4 cut(s)	281, 638, 900, 961
Hpy166II	GTNNAC	2 cut(s)	100, 457
Hpy188III	TCNNGA	4 cut(s)	109, 466, 693, 997
Hpy8I	GTNNAC	2 cut(s)	100, 457
Hpy99I	CGWCG	2 cut(s)	654, 1106
HpyAV	CCTTC	3 cut(s)	894, 1091, 1128
HpyCH4III	ACNGT	3 cut(s)	126, 483, 912
HpyCH4V	TGCA	5 cut(s)	166, 523, 676, 800, 1140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1124
HpyF3I	CTNAG	2 cut(s)	848, 1109
Hsp92II	CATG	3 cut(s)	806, 812, 879
HspAI	GCGC	1 cut(s)	1116
Kpn2I	TCCGGA	1 cut(s)	996
LmnI	GCTCC	3 cut(s)	261, 618, 1088
Lsp1109I	GCAGC	3 cut(s)	178, 535, 903
LweI	GCATC	3 cut(s)	124, 481, 924
MaeI	CTAG	1 cut(s)	1052
MaeIII	GTNAC	1 cut(s)	1054
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	3 cut(s)	178, 535, 975
MlsI	TGGCCA	1 cut(s)	807
MluCI	AATT	2 cut(s)	780, 789
MluNI	TGGCCA	1 cut(s)	807
MlyI	GAGTC	3 cut(s)	77, 434, 738
MmeI	TCCRAC	2 cut(s)	240, 597
Mox20I	TGGCCA	1 cut(s)	807
MroI	TCCGGA	1 cut(s)	996
MscI	TGGCCA	1 cut(s)	807
MslI	CAYNNNNRTG	2 cut(s)	807, 1061
Msp20I	TGGCCA	1 cut(s)	807
MspI	CCGG	1 cut(s)	997
MunI	CAATTG	1 cut(s)	789
MvnI	CGCG	1 cut(s)	1021
MwoI	GCNNNNNNNGC	1 cut(s)	1124
NlaIII	CATG	3 cut(s)	806, 812, 879
NlaIV	GGNNCC	5 cut(s)	119, 180, 476, 537, 977
NmuCI	GTSAC	1 cut(s)	1054
NspI	RCATGY	1 cut(s)	879
NspV	TTCGAA	1 cut(s)	829
OliI	CACNNNNGTG	1 cut(s)	1061
PaeI	GCATGC	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	689, 970
PflFI	GACNNNGTC	1 cut(s)	1052
PkrI	GCNGC	6 cut(s)	139, 168, 496, 525, 918, 1020
Ple19I	CGATCG	1 cut(s)	947
PleI	GAGTC	3 cut(s)	77, 434, 737
PpsI	GAGTC	3 cut(s)	77, 434, 737
PpuMI	RGGWCCY	2 cut(s)	245, 602
Psp5II	RGGWCCY	2 cut(s)	245, 602
PspN4I	GGNNCC	5 cut(s)	119, 180, 476, 537, 977
PspPI	GGNCC	3 cut(s)	245, 602, 1072
PspPPI	RGGWCCY	2 cut(s)	245, 602
PstI	CTGCAG	1 cut(s)	678
PstNI	CAGNNNCTG	1 cut(s)	1039
PsuI	RGATCY	3 cut(s)	178, 535, 975
PsyI	GACNNNGTC	1 cut(s)	1052
PvuI	CGATCG	1 cut(s)	947
RseI	CAYNNNNRTG	2 cut(s)	807, 1061
SatI	GCNGC	6 cut(s)	138, 167, 495, 524, 917, 1019
Sau96I	GGNCC	3 cut(s)	245, 602, 1072
SchI	GAGTC	3 cut(s)	77, 434, 738
SfaNI	GCATC	3 cut(s)	124, 481, 924
SfcI	CTRYAG	1 cut(s)	674
SfuI	TTCGAA	1 cut(s)	829
SinI	GGWCC	3 cut(s)	245, 602, 1072
SmiMI	CAYNNNNRTG	2 cut(s)	807, 1061
SmlI	CTYRAG	6 cut(s)	47, 173, 195, 404, 530, 552
SmoI	CTYRAG	6 cut(s)	47, 173, 195, 404, 530, 552
SphI	GCATGC	1 cut(s)	879
Sse9I	AATT	2 cut(s)	780, 789
SsiI	CCGC	6 cut(s)	115, 138, 472, 495, 686, 1019
SspMI	CTAG	1 cut(s)	1052
StyI	CCWWGG	1 cut(s)	704
TaaI	ACNGT	3 cut(s)	126, 483, 912
TaqI	TCGA	4 cut(s)	717, 829, 943, 1132
TasI	AATT	2 cut(s)	780, 789
TauI	GCSGC	3 cut(s)	140, 497, 1021
TfiI	GAWTC	2 cut(s)	689, 970
TscAI	CASTG	3 cut(s)	363, 1044, 1098
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	3 cut(s)	166, 523, 916
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	5 cut(s)	17, 275, 632, 735, 825
TspRI	CASTG	3 cut(s)	363, 1044, 1098
Tth111I	GACNNNGTC	1 cut(s)	1052
VpaK11BI	GGWCC	3 cut(s)	245, 602, 1072
XagI	CCTNNNNNAGG	2 cut(s)	240, 597
XceI	RCATGY	1 cut(s)	879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1082
XspI	CTAG	1 cut(s)	1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.