Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Reverse (-)

3973503 .. 3974505

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG050200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGGTGCAGAAGGGCTCGCGGCTTCGGCGACGTCTGGAGCGGCGATGGCGCCACTCGACTGGATGTTTTCTTAAGTTTCTGGAGAACAGACCGCCGGCGAGGAAGTTCAGGAAGGTTCTGGAACTTGGAATTGGAATCAGGTACTACACGACGCGGCTGTGGATTGGGACAACACCTCAGATTGTCGCTCTGATTGTGGATACAAGGAGTACAGTCACTTATGTGCCTTACTCTAACTGTGAACCGTGTGGTAACCATCAGGTTCGGCTTCATTTCCATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

95

Amino Acids

11.23

Weight (kDa)

11.11

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	43
AccII	CGCG	2 cut(s)	22, 157
AciI	CCGC	5 cut(s)	5, 22, 43, 95, 157
AcyI	GRCGYC	2 cut(s)	34, 52
AfaI	GTAC	2 cut(s)	146, 214
AflII	CTTAAG	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AleI	CACNNNNGTG	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	20
BccI	CCATC	2 cut(s)	42, 267
BciVI	GTATCC	1 cut(s)	196
BfoI	RGCGCY	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	23, 44, 158
BlsI	GCNGC	3 cut(s)	24, 45, 159
BmiI	GGNNCC	1 cut(s)	53
BpmI	CTGGAG	2 cut(s)	59, 104
BsaHI	GRCGYC	2 cut(s)	34, 52
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	2 cut(s)	22, 157
BshNI	GGYRCC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	20
BspACI	CCGC	5 cut(s)	5, 22, 43, 95, 157
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	22, 157
BspLI	GGNNCC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	97
BssNI	GRCGYC	2 cut(s)	34, 52
Bst4CI	ACNGT	3 cut(s)	217, 242, 249
BstACI	GRCGYC	2 cut(s)	34, 52
BstAFI	CTTAAG	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	20, 99
BstDEI	CTNAG	1 cut(s)	180
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	71
BstFNI	CGCG	2 cut(s)	22, 157
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 49
BstPI	GGTNACC	1 cut(s)	254
BstUI	CGCG	2 cut(s)	22, 157
BstXI	CCANNNNNNTGG	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	20, 99
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	97
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	145, 213
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	4 cut(s)	18, 25, 160, 271
CviKI_1	RGCY	4 cut(s)	18, 25, 160, 271
CviQI	GTAC	2 cut(s)	145, 213
DdeI	CTNAG	1 cut(s)	180
DinI	GGCGCC	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	20
EgeI	GGCGCC	1 cut(s)	53
EheI	GGCGCC	1 cut(s)	53
FaeI	CATG	1 cut(s)	284
FaiI	YATR	2 cut(s)	225, 282
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	23, 44, 158
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	23, 44, 158
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	23, 44, 158
GsuI	CTGGAG	2 cut(s)	59, 104
HaeII	RGCGCY	1 cut(s)	55
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	2 cut(s)	34, 52
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	183, 195
Hpy188III	TCNNGA	4 cut(s)	38, 83, 112, 122
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	2 cut(s)	36, 157
HpyAV	CCTTC	2 cut(s)	7, 109
HpyCH4III	ACNGT	3 cut(s)	217, 242, 249
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 49
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	2 cut(s)	34, 52
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	52
KasI	GGCGCC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	8 cut(s)	23, 48, 68, 97, 107, 111, 127, 248
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	217, 254
MbiI	CCGCTC	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	132
Mly113I	GGCGCC	1 cut(s)	52
MnlI	CCTC	2 cut(s)	96, 189
MreI	CGCCGGCG	1 cut(s)	97
MroNI	GCCGGC	1 cut(s)	97
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	224, 279
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	1 cut(s)	98
MvnI	CGCG	2 cut(s)	22, 157
MwoI	GCNNNNNNNGC	2 cut(s)	28, 49
NaeI	GCCGGC	1 cut(s)	99
NarI	GGCGCC	1 cut(s)	52
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	224
PdiI	GCCGGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	24, 45, 159
PluTI	GGCGCC	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	146, 214
RsaNI	GTAC	2 cut(s)	145, 213
RseI	CAYNNNNRTG	2 cut(s)	224, 279
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	3 cut(s)	23, 44, 158
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	5 cut(s)	37, 120, 146, 181, 267
SfoI	GGCGCC	1 cut(s)	53
SgrAI	CRCCGGYG	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	224, 279
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	5 cut(s)	5, 22, 43, 95, 157
SspDI	GGCGCC	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	217, 242, 249
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	132
TatI	WGTACW	1 cut(s)	212
TauI	GCSGC	3 cut(s)	25, 46, 160
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	263
Vha464I	CTTAAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.