Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003823.1

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Forward (+)

40913 .. 42851

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003823.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggcgaagaacgacgcgtcgtcgtcggcgttgggatcggtggacgagttcctgaagcggtgcgagcaatccggcgatgccgcgtactctgctctgagatcagtgctggagcgtctcgaggatccgaaaacccgaactcaagctcggatcttcctctccagcctccagaagcgcttccctaccaaggacgactgcgatcactgcttccgcacctatcatttccagattgaggacatcttcttcgatcagtatcaaggttaccagggtaggaagaagctgacaatgatggttatccctagcatttttgttccagaagattggtccttcacttttttcgaaggactaaatagacatccggactctatctttaaggacaagtcactcgctgagcttggctgtggaaatggttggatatccattgccattgctgagaagtggttgccatccaaggtgtatggactcgatatcaatcctagagcagtcaagatgtcatggataaatttgtatctaaatgctttggacgaggaaggtcagcccatctatgatgctgagaaaaagaccttgctggacagggttgagtttcatgaatcagatctcctatcttattgcagagacaatgatattcaacttgaacgaattgttggttgcatccctcagattcttaacccgaatccagatgcaatgtctaagatgataactgagaatgcaagtgaggaatttctacattcattgagcaattattgtgcgcttcagccttcgcaagtcctagagcttgatgctaacggtattcttctcaacgtccacgacgaccttgacgatttccttcccaaatcccagaaaggctcacgtgacggtgaagctgtcgtcggagtctttgatctggacggcggggagggggcctttgttgttgggatcgtttcgatcggccatgaagatgtggtacctcatggcggcagaggtggtggtggagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001887 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0016740 GO:0016741 GO:0017144 GO:0032259 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046500 GO:0051186 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Aminotran_1_2 MTS Methyltransf_31

Protein Analysis

324

Amino Acids

36.24

Weight (kDa)

4.76

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	940
AccB1I	GGYRCC	1 cut(s)	940
AccII	CGCG	2 cut(s)	17, 83
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	5 cut(s)	58, 81, 208, 888, 951
AclWI	GGATC	5 cut(s)	43, 116, 129, 155, 920
AcoI	YGGCCR	1 cut(s)	925
AcsI	RAATTY	2 cut(s)	499, 716
AcuI	CTGAAG	2 cut(s)	74, 734
AcvI	CACGTG	1 cut(s)	848
AfaI	GTAC	2 cut(s)	86, 942
AfeI	AGCGCT	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	184, 229, 950
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	626, 632
AhdI	GACNNNNNGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	5 cut(s)	143, 277, 391, 772, 860
AluI	AGCT	5 cut(s)	143, 277, 391, 772, 860
Alw26I	GTCTC	2 cut(s)	119, 606
AlwI	GGATC	5 cut(s)	43, 116, 129, 155, 920
Ama87I	CYCGRG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	355
Aor51HI	AGCGCT	1 cut(s)	173
AoxI	GGCC	2 cut(s)	897, 925
ApoI	RAATTY	2 cut(s)	499, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
Asp700I	GAANNNNTTC	1 cut(s)	173
Asp718I	GGTACC	1 cut(s)	940
AspLEI	GCGC	2 cut(s)	174, 748
AspS9I	GGNCC	2 cut(s)	321, 897
AsuHPI	GGTGA	1 cut(s)	866
AsuII	TTCGAA	1 cut(s)	336
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	940
BarI	GAAGNNNNNNTAC	2 cut(s)	924, 956
BbrPI	CACGTG	1 cut(s)	848
BccI	CCATC	3 cut(s)	280, 451, 545
BceAI	ACGGC	1 cut(s)	901
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	119, 606
BfaI	CTAG	3 cut(s)	297, 474, 767
BfoI	RGCGCY	1 cut(s)	175
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	2 cut(s)	81, 952
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	2 cut(s)	82, 953
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	321
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	321, 897
BmiI	GGNNCC	3 cut(s)	123, 898, 942
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	5 cut(s)	67, 535, 657, 667, 766
BpmI	CTGGAG	3 cut(s)	128, 142, 149
Bpu1102I	GCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	848
BsaBI	GATNNNNATC	3 cut(s)	249, 290, 468
BsaJI	CCNNGG	3 cut(s)	183, 262, 447
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 229, 950
Bse3DI	GCAATG	3 cut(s)	417, 423, 687
Bse8I	GATNNNNATC	3 cut(s)	249, 290, 468
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	3 cut(s)	183, 262, 447
BseGI	GGATG	3 cut(s)	352, 443, 648
BseJI	GATNNNNATC	3 cut(s)	249, 290, 468
BseLI	CCNNNNNNNGG	3 cut(s)	184, 229, 950
BseMI	GCAATG	3 cut(s)	417, 423, 687
BseMII	CTCAG	6 cut(s)	86, 378, 420, 540, 668, 690
Bsh1236I	CGCG	2 cut(s)	17, 83
Bsh1285I	CGRYCG	1 cut(s)	924
BshFI	GGCC	2 cut(s)	899, 927
BshNI	GGYRCC	1 cut(s)	940
BsiEI	CGRYCG	1 cut(s)	924
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	72, 356
BslI	CCNNNNNNNGG	3 cut(s)	184, 229, 950
BsmAI	GTCTC	2 cut(s)	119, 606
BsmBI	CGTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	899, 927
BsoBI	CYCGRG	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	355
Bsp1720I	GCTNAGC	1 cut(s)	387
BspACI	CCGC	5 cut(s)	58, 81, 208, 888, 951
BspANI	GGCC	2 cut(s)	899, 927
BspCNI	CTCAG	6 cut(s)	87, 379, 421, 541, 667, 691
BspEI	TCCGGA	1 cut(s)	355
BspFNI	CGCG	2 cut(s)	17, 83
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	123, 898, 942
BspPI	GGATC	5 cut(s)	43, 116, 129, 155, 920
BspT104I	TTCGAA	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	940
BsrDI	GCAATG	3 cut(s)	417, 423, 687
BssECI	CCNNGG	3 cut(s)	183, 262, 447
BssT1I	CCWWGG	2 cut(s)	183, 447
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	785, 854
BstBAI	YACGTR	1 cut(s)	848
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	7 cut(s)	95, 387, 429, 549, 654, 687, 699
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	352, 443, 648
BstFNI	CGCG	2 cut(s)	17, 83
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	2 cut(s)	174, 748
BstMAI	GTCTC	2 cut(s)	119, 606
BstMCI	CGRYCG	1 cut(s)	924
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 89, 201
BstNI	CCWGG	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	261
BstUI	CGCG	2 cut(s)	17, 83
BstX2I	RGATCY	3 cut(s)	121, 147, 592
BstXI	CCANNNNNNTGG	1 cut(s)	318
BstYI	RGATCY	3 cut(s)	121, 147, 592
BsuRI	GGCC	2 cut(s)	899, 927
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	352, 443, 648
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	108, 199
Cac8I	GCNNGC	1 cut(s)	65
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	2 cut(s)	174, 748
Cfr13I	GGNCC	2 cut(s)	321, 897
CseI	GACGC	3 cut(s)	6, 23, 101
Csp6I	GTAC	2 cut(s)	85, 941
CviAII	CATG	4 cut(s)	492, 584, 929, 947
CviQI	GTAC	2 cut(s)	85, 941
DdeI	CTNAG	7 cut(s)	95, 387, 429, 549, 654, 687, 699
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	925
Eam1105I	GACNNNNNGTC	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	183, 447
Eco32I	GATATC	2 cut(s)	414, 466
Eco47I	GGWCC	1 cut(s)	321
Eco47III	AGCGCT	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	74, 734
Eco72I	CACGTG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	897
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	261
EcoRV	GATATC	2 cut(s)	414, 466
EcoT14I	CCWWGG	2 cut(s)	183, 447
ErhI	CCWWGG	2 cut(s)	183, 447
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	4 cut(s)	495, 587, 932, 950
FaiI	YATR	6 cut(s)	456, 493, 543, 585, 930, 948
FatI	CATG	4 cut(s)	491, 583, 928, 946
FauI	CCCGC	1 cut(s)	881
Fnu4HI	GCNGC	2 cut(s)	81, 952
FokI	GGATG	3 cut(s)	339, 430, 635
Fsp4HI	GCNGC	2 cut(s)	81, 952
FspBI	CTAG	3 cut(s)	297, 474, 767
GlaI	GCGC	2 cut(s)	173, 747
GluI	GCNGC	2 cut(s)	81, 952
GsuI	CTGGAG	3 cut(s)	128, 142, 149
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	899, 927
HapII	CCGG	2 cut(s)	72, 356
HgaI	GACGC	3 cut(s)	6, 23, 101
HhaI	GCGC	2 cut(s)	174, 748
Hin1II	CATG	4 cut(s)	495, 587, 932, 950
Hin6I	GCGC	2 cut(s)	172, 746
HinP1I	GCGC	2 cut(s)	172, 746
HinfI	GANTC	6 cut(s)	359, 459, 587, 658, 670, 870
HpaII	CCGG	2 cut(s)	72, 356
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	2 cut(s)	43, 802
Hpy188I	TCNGA	6 cut(s)	96, 126, 147, 592, 657, 869
Hpy8I	GTNNAC	2 cut(s)	43, 802
Hpy99I	CGWCG	6 cut(s)	17, 22, 25, 28, 809, 869
HpyAV	CCTTC	5 cut(s)	332, 334, 521, 765, 833
HpyCH4III	ACNGT	2 cut(s)	785, 854
HpyCH4IV	ACGT	2 cut(s)	798, 847
HpyCH4V	TGCA	4 cut(s)	609, 648, 680, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 89, 201
HpyF3I	CTNAG	7 cut(s)	95, 387, 429, 549, 654, 687, 699
HpySE526I	ACGT	2 cut(s)	798, 847
Hsp92II	CATG	4 cut(s)	495, 587, 932, 950
HspAI	GCGC	2 cut(s)	172, 746
Kpn2I	TCCGGA	1 cut(s)	355
KpnI	GGTACC	1 cut(s)	944
LmnI	GCTCC	1 cut(s)	109
LweI	GCATC	5 cut(s)	67, 535, 657, 667, 766
MaeI	CTAG	3 cut(s)	297, 474, 767
MaeII	ACGT	2 cut(s)	798, 847
MaeIII	GTNAC	3 cut(s)	257, 378, 848
MboII	GAAGA	8 cut(s)	19, 142, 229, 232, 283, 326, 782, 944
MflI	RGATCY	3 cut(s)	121, 147, 592
MluCI	AATT	4 cut(s)	499, 636, 716, 736
MluI	ACGCGT	1 cut(s)	15
MlyI	GAGTC	3 cut(s)	353, 453, 879
MmeI	TCCRAC	2 cut(s)	389, 847
MroI	TCCGGA	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	2 cut(s)	369, 663
MslI	CAYNNNNRTG	1 cut(s)	933
MspI	CCGG	2 cut(s)	72, 356
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	2 cut(s)	17, 83
MwoI	GCNNNNNNNGC	3 cut(s)	64, 89, 201
NlaIII	CATG	4 cut(s)	495, 587, 932, 950
NlaIV	GGNNCC	3 cut(s)	123, 898, 942
NmuCI	GTSAC	2 cut(s)	378, 848
NspV	TTCGAA	1 cut(s)	336
PaeR7I	CTCGAG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	3 cut(s)	26, 804, 813
PctI	GAATGC	1 cut(s)	709
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	587, 658, 670
PkrI	GCNGC	2 cut(s)	82, 953
Ple19I	CGATCG	1 cut(s)	924
PleI	GAGTC	3 cut(s)	353, 453, 878
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
PpsI	GAGTC	3 cut(s)	353, 453, 878
Ppu21I	YACGTR	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	261
PspCI	CACGTG	1 cut(s)	848
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	3 cut(s)	123, 898, 942
PspPI	GGNCC	2 cut(s)	321, 897
PsuI	RGATCY	3 cut(s)	121, 147, 592
PvuI	CGATCG	1 cut(s)	924
RsaI	GTAC	2 cut(s)	86, 942
RsaNI	GTAC	2 cut(s)	85, 941
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	2 cut(s)	369, 663
SatI	GCNGC	2 cut(s)	81, 952
Sau96I	GGNCC	2 cut(s)	321, 897
SchI	GAGTC	3 cut(s)	353, 453, 879
ScrFI	CCNGG	1 cut(s)	263
SfaNI	GCATC	5 cut(s)	67, 535, 657, 667, 766
Sfr274I	CTCGAG	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	1 cut(s)	321
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	2 cut(s)	116, 138
SmoI	CTYRAG	2 cut(s)	116, 138
Sse9I	AATT	4 cut(s)	499, 636, 716, 736
SsiI	CCGC	5 cut(s)	58, 81, 208, 888, 951
SspMI	CTAG	3 cut(s)	297, 474, 767
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	183, 447
TaaI	ACNGT	2 cut(s)	785, 854
TaiI	ACGT	2 cut(s)	801, 850
TaqI	TCGA	5 cut(s)	117, 243, 336, 462, 920
TasI	AATT	4 cut(s)	499, 636, 716, 736
TauI	GCSGC	2 cut(s)	83, 954
TfiI	GAWTC	3 cut(s)	587, 658, 670
Tru1I	TTAA	2 cut(s)	369, 663
Tru9I	TTAA	2 cut(s)	369, 663
TscAI	CASTG	2 cut(s)	108, 206
TseFI	GTSAC	2 cut(s)	378, 848
Tsp45I	GTSAC	2 cut(s)	378, 848
TspDTI	ATGAA	4 cut(s)	572, 600, 717, 945
TspRI	CASTG	2 cut(s)	108, 206
VpaK11BI	GGWCC	1 cut(s)	321
XapI	RAATTY	2 cut(s)	499, 716
XhoI	CTCGAG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	3 cut(s)	297, 474, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.