Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003487

Physical Location & Seq

Genomic Coordinates Forward (+)

55207917 .. 55216599

Gene Structure 8683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0401700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGTGTGTAAAGGAGTAGGAGAATTTTCAAGGGACTTGGGGATGAGGAATAGATCACTTGTGGCAGTTCACGTTGCTGCTCAGTATGGGCAAACATCTTTCTTGAACCACATCGTTCCAAAGTATCATGCTGATTTTGATGCACCTGATAATGAGGGTAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCGGATACAGTTAGGTTGCTTCTGTTTAGAGATGCAAGCCAAGGGATGCAAGATAAAGAAGTCCAGCCAGCAGCGGGCTTAAGGAAACCACTGGTTAAAGAGAATTTGTGGTGGGAAGATTGCACATTTTGGTTTTGCTCCTATCTTGTTCTGCACAATAATCATTCAAACAGTTCTCTTTATGAACTCAGTTCTCGCAGGTTACTGCTGCTATTGGTTTCTGGGGATGGGCAGCTATTTCATTTGCAGTGGGTTCGCTCATTATGTTCTACAGGTGCAGTAGTGGTCAGTGGTGTTTTATTCTGTCGAATTGCCATTGAAAGTCGCACTCAAGATCCTGGCTACATCAAAAGAGCAGGGGACTTGGGCAGTCATATAGATACTGAGGATCCTCTGTTAAATATTGATTTGAACAATTCATCTGTATGGATGGGAAATTGGTCTCAACTTTGTCCTACTTGCAAGATAATCAGACCTGTTCGCTCCAAACACTGTCCCACATGTAATCGATGTGTAGAACAGTTTGACCATCATTGCCCTTGGATATATCTAATTGTGTTGGCAAGTGTCTACTGTGAAAGATACAGGAAGCATGTCTTCAGAAACTTGGTTATGGAGGTTTCCATAAGAGAGAGATTCCTTATGGCTATCATAAATAAAAAATATGGACTGAGAAACAAGCGAGATTTCTTTATTTTCTTCTGCATGGGAACATTGACATCAAGCATTTCTGCTGCTGTTACAGTTCAAAGGATTTGGACTGCAGTGCCAACATGGCAAACAGAAGAAATATGGATTCATCATGTGATAGTTCAATATCCAATTCTTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTACGACTCTGACAGTGGCACAAGCATCTCAGATAGCTCGTAATATCACAACTAATGAACTGGCAAATGTTATTCATTATGGGTATCTTCGTGGTCCAGATGGGCGGTTTCGAAACCCATATAATCATGGGTGCCGTAAGAACTGTGCAGATTTTTTCATACAGACGACGATGAAATTGCTTGGCCTCCATTGCAGCAGGTTGCCAGTTAAATCTTCATGTTTAATACGCAGAGTTATATTACATGAATACTTTGATCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001887 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009987 GO:0016740 GO:0016741 GO:0017144 GO:0032259 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046500 GO:0051186 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Aminotran_1_2 MTS Methyltransf_31

Protein Analysis

442

Amino Acids

50.7

Weight (kDa)

8.95

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	22 - 79	7.7e-08	Ankyrin repeats (3 copies)
DHHC	PF01529	214 - 249	2.1e-14	DHHC palmitoyltransferase
DHHC	PF01529	283 - 377	2.6e-07	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465191 RchiOBHm_Chr3g0465811 RchiOBHm_Chr5g0019031 RchiOBHm_Chr5g0034941 RchiOBHm_Chr7g0195931
rosa_laevigata	RLG00000024649 RLG00000027116
rosa_multiflora	Rmu_sc0000148.1_g000031 Rmu_sc0001238.1_g000002 Rmu_sc0003823.1_g000007 Rmu_sc0007965.1_g000001 Rmu_sc0024363.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054870 Rroxscaffold_1G00055810 Rroxscaffold_2G00105910 Rroxscaffold_2G00150290 Rroxscaffold_6G00419080
rosa_rugosa	Rorug05G0401700 Rorug05G0401800 Rorug05G0401900 Rorug05G0401900
rosa_samantha	Rh1CG177500 Rh1CG311700 Rh2AG050200 Rh3BG139900 Rh3CG141600 Rh3CG150000 Rh3DG141100 Rh4AG403900 Rh5CG224600 Rh5DG078700 Rh7AG321100 Rh7DG364900
rosa_wichuraiana	Rw1G007010 Rw3G011460 Rw7G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	384, 1251
AccB1I	GGYRCC	1 cut(s)	1194
AccI	GTMKAC	1 cut(s)	765
AciI	CCGC	3 cut(s)	197, 269, 1168
AclWI	GGATC	3 cut(s)	524, 578, 591
AcsI	RAATTY	2 cut(s)	23, 298
AcuI	CTGAAG	1 cut(s)	778
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflII	CTTAAG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	695
AgsI	TTSAA	7 cut(s)	30, 106, 363, 515, 607, 944, 1010
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	2 cut(s)	430, 1100
AluI	AGCT	2 cut(s)	430, 1100
Alw26I	GTCTC	1 cut(s)	642
AlwI	GGATC	3 cut(s)	524, 578, 591
AoxI	GGCC	1 cut(s)	1246
ApeKI	GCWGC	7 cut(s)	77, 179, 266, 403, 427, 929, 1257
ApoI	RAATTY	2 cut(s)	23, 298
AspS9I	GGNCC	1 cut(s)	1157
AsuII	TTCGAA	1 cut(s)	1174
AvaII	GGWCC	1 cut(s)	1157
BamHI	GGATCC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	1194
BbsI	GAAGAC	1 cut(s)	784
BbvI	GCAGC	7 cut(s)	64, 166, 278, 390, 439, 916, 1269
BccI	CCATC	4 cut(s)	416, 619, 732, 1157
BceAI	ACGGC	1 cut(s)	1182
BcgI	CGANNNNNNTGC	4 cut(s)	431, 465, 1222, 1256
BciT130I	CCWGG	1 cut(s)	534
BciVI	GTATCC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	1318
BcoDI	GTCTC	1 cut(s)	642
BfmI	CTRYAG	2 cut(s)	465, 957
BfrI	CTTAAG	1 cut(s)	274
BfuAI	ACCTGC	2 cut(s)	384, 1251
BfuI	GTATCC	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	970
BisI	GCNGC	7 cut(s)	78, 180, 267, 404, 428, 930, 1258
BlsI	GCNGC	7 cut(s)	79, 181, 268, 405, 429, 931, 1259
Bme1390I	CCNGG	1 cut(s)	534
Bme18I	GGWCC	1 cut(s)	1157
BmgT120I	GGNCC	1 cut(s)	1157
BmiI	GGNNCC	2 cut(s)	585, 1196
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	4 cut(s)	130, 217, 231, 1097
BpiI	GAAGAC	1 cut(s)	784
Bpu14I	TTCGAA	1 cut(s)	1174
BpuEI	CTTGAG	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	703
BsaI	GGTCTC	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	235, 734
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	3 cut(s)	291, 1128, 1268
Bse3DI	GCAATG	2 cut(s)	727, 1252
BseBI	CCWGG	1 cut(s)	534
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	2 cut(s)	235, 734
BseGI	GGATG	4 cut(s)	48, 246, 427, 630
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	2 cut(s)	727, 1252
BseMII	CTCAG	5 cut(s)	95, 397, 570, 857, 1106
BseNI	ACTGG	3 cut(s)	291, 1128, 1268
BseXI	GCAGC	7 cut(s)	64, 166, 278, 390, 439, 916, 1269
BsgI	GTGCAG	3 cut(s)	332, 492, 1230
BshFI	GGCC	1 cut(s)	1248
BshNI	GGYRCC	1 cut(s)	1194
BshVI	ATCGAT	1 cut(s)	703
BslFI	GGGAC	3 cut(s)	47, 569, 675
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	642
BsmFI	GGGAC	3 cut(s)	47, 569, 675
BsnI	GGCC	1 cut(s)	1248
Bso31I	GGTCTC	1 cut(s)	642
Bsp119I	TTCGAA	1 cut(s)	1174
Bsp143I	GATC	4 cut(s)	53, 529, 583, 1318
BspACI	CCGC	3 cut(s)	197, 269, 1168
BspANI	GGCC	1 cut(s)	1248
BspCNI	CTCAG	5 cut(s)	94, 396, 571, 858, 1105
BspDI	ATCGAT	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	585, 1196
BspMAI	CTGCAG	1 cut(s)	961
BspMI	ACCTGC	2 cut(s)	384, 1251
BspPI	GGATC	3 cut(s)	524, 578, 591
BspT104I	TTCGAA	1 cut(s)	1174
BspT107I	GGYRCC	1 cut(s)	1194
BspTI	CTTAAG	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	642
BsrDI	GCAATG	2 cut(s)	727, 1252
BsrI	ACTGG	3 cut(s)	291, 1128, 1268
BssECI	CCNNGG	2 cut(s)	235, 734
BssMI	GATC	4 cut(s)	53, 529, 583, 1318
BssT1I	CCWWGG	2 cut(s)	235, 734
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	8 cut(s)	205, 368, 689, 717, 770, 940, 1078, 1208
Bst6I	CTCTTC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	1174
BstC8I	GCNNGC	3 cut(s)	232, 264, 271
BstDEI	CTNAG	5 cut(s)	81, 383, 579, 866, 1092
BstF5I	GGATG	4 cut(s)	48, 246, 427, 630
BstKTI	GATC	4 cut(s)	56, 532, 586, 1321
BstMAI	GTCTC	1 cut(s)	642
BstMBI	GATC	4 cut(s)	53, 529, 583, 1318
BstMWI	GCNNNNNNNGC	2 cut(s)	970, 1254
BstNI	CCWGG	1 cut(s)	534
BstNSI	RCATGY	2 cut(s)	699, 791
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	2 cut(s)	465, 957
BstV1I	GCAGC	7 cut(s)	64, 166, 278, 390, 439, 916, 1269
BstV2I	GAAGAC	1 cut(s)	784
BstX2I	RGATCY	2 cut(s)	529, 583
BstYI	RGATCY	2 cut(s)	529, 583
Bsu15I	ATCGAT	1 cut(s)	703
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	1248
BsuTUI	ATCGAT	1 cut(s)	703
BtsCI	GGATG	4 cut(s)	48, 246, 427, 630
BtsI	GCAGTG	2 cut(s)	449, 966
BtsIMutI	CAGTG	6 cut(s)	284, 449, 490, 685, 966, 1083
BveI	ACCTGC	2 cut(s)	384, 1251
Cac8I	GCNNGC	3 cut(s)	232, 264, 271
Cfr13I	GGNCC	1 cut(s)	1157
ClaI	ATCGAT	1 cut(s)	703
CviAII	CATG	9 cut(s)	128, 696, 788, 901, 969, 998, 1190, 1281, 1307
DdeI	CTNAG	5 cut(s)	81, 383, 579, 866, 1092
DpnI	GATC	4 cut(s)	55, 531, 585, 1320
DpnII	GATC	4 cut(s)	53, 529, 583, 1318
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	235, 734
Eco31I	GGTCTC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	1157
Eco57I	CTGAAG	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	235, 734
ErhI	CCWWGG	2 cut(s)	235, 734
FaeI	CATG	9 cut(s)	131, 699, 791, 904, 972, 1001, 1193, 1284, 1310
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FaqI	GGGAC	3 cut(s)	47, 569, 675
FatI	CATG	9 cut(s)	127, 695, 787, 900, 968, 997, 1189, 1280, 1306
FauI	CCCGC	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	1318
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	7 cut(s)	78, 180, 267, 404, 428, 930, 1258
FokI	GGATG	4 cut(s)	55, 253, 434, 637
Fsp4HI	GCNGC	7 cut(s)	78, 180, 267, 404, 428, 930, 1258
GluI	GCNGC	7 cut(s)	78, 180, 267, 404, 428, 930, 1258
HaeIII	GGCC	1 cut(s)	1248
Hin1II	CATG	9 cut(s)	131, 699, 791, 904, 972, 1001, 1193, 1284, 1310
HinfI	GANTC	4 cut(s)	163, 831, 991, 1069
Hpy166II	GTNNAC	2 cut(s)	70, 766
Hpy188I	TCNGA	4 cut(s)	668, 797, 1074, 1095
Hpy188III	TCNNGA	3 cut(s)	103, 527, 1160
Hpy8I	GTNNAC	2 cut(s)	70, 766
Hpy99I	CGWCG	1 cut(s)	1234
HpyCH4III	ACNGT	8 cut(s)	205, 368, 689, 717, 770, 940, 1078, 1208
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	970, 1254
HpyF3I	CTNAG	5 cut(s)	81, 383, 579, 866, 1092
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	9 cut(s)	131, 699, 791, 904, 972, 1001, 1193, 1284, 1310
Ksp22I	TGATCA	1 cut(s)	1318
Kzo9I	GATC	4 cut(s)	53, 529, 583, 1318
LmnI	GCTCC	2 cut(s)	338, 683
Lsp1109I	GCAGC	7 cut(s)	64, 166, 278, 390, 439, 916, 1269
LweI	GCATC	4 cut(s)	130, 217, 231, 1097
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	396, 934
MalI	GATC	4 cut(s)	55, 531, 585, 1320
MboI	GATC	4 cut(s)	53, 529, 583, 1318
MboII	GAAGA	7 cut(s)	161, 323, 784, 886, 992, 1142, 1269
MflI	RGATCY	2 cut(s)	529, 583
MluCI	AATT	8 cut(s)	23, 298, 504, 610, 631, 747, 1017, 1238
MlyI	GAGTC	2 cut(s)	172, 1063
MnlI	CCTC	7 cut(s)	39, 148, 177, 574, 597, 805, 1259
MseI	TTAA	5 cut(s)	275, 291, 593, 1272, 1286
MslI	CAYNNNNRTG	2 cut(s)	619, 1033
MspA1I	CMGCKG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	970, 1254
NdeII	GATC	4 cut(s)	53, 529, 583, 1318
NlaIII	CATG	9 cut(s)	131, 699, 791, 904, 972, 1001, 1193, 1284, 1310
NlaIV	GGNNCC	2 cut(s)	585, 1196
NspI	RCATGY	2 cut(s)	699, 791
NspV	TTCGAA	1 cut(s)	1174
PciI	ACATGT	1 cut(s)	695
PfeI	GAWTC	2 cut(s)	831, 991
PkrI	GCNGC	7 cut(s)	79, 181, 268, 405, 429, 931, 1259
PleI	GAGTC	2 cut(s)	171, 1063
PpsI	GAGTC	2 cut(s)	171, 1063
PscI	ACATGT	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	585, 1196
PspPI	GGNCC	1 cut(s)	1157
PstI	CTGCAG	1 cut(s)	961
PsuI	RGATCY	2 cut(s)	529, 583
RseI	CAYNNNNRTG	2 cut(s)	619, 1033
SaqAI	TTAA	5 cut(s)	275, 291, 593, 1272, 1286
SatI	GCNGC	7 cut(s)	78, 180, 267, 404, 428, 930, 1258
Sau3AI	GATC	4 cut(s)	53, 529, 583, 1318
Sau96I	GGNCC	1 cut(s)	1157
SchI	GAGTC	2 cut(s)	172, 1063
ScrFI	CCNGG	1 cut(s)	534
SfaNI	GCATC	4 cut(s)	130, 217, 231, 1097
SfcI	CTRYAG	2 cut(s)	465, 957
SfuI	TTCGAA	1 cut(s)	1174
SinI	GGWCC	1 cut(s)	1157
SmiMI	CAYNNNNRTG	2 cut(s)	619, 1033
SmlI	CTYRAG	2 cut(s)	274, 525
SmoI	CTYRAG	2 cut(s)	274, 525
Sse9I	AATT	8 cut(s)	23, 298, 504, 610, 631, 747, 1017, 1238
SsiI	CCGC	3 cut(s)	197, 269, 1168
SspI	AATATT	1 cut(s)	598
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	235, 734
TaaI	ACNGT	8 cut(s)	205, 368, 689, 717, 770, 940, 1078, 1208
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	502, 703, 1174
TasI	AATT	8 cut(s)	23, 298, 504, 610, 631, 747, 1017, 1238
TfiI	GAWTC	2 cut(s)	831, 991
Tru1I	TTAA	5 cut(s)	275, 291, 593, 1272, 1286
Tru9I	TTAA	5 cut(s)	275, 291, 593, 1272, 1286
TscAI	CASTG	6 cut(s)	291, 449, 490, 692, 966, 1083
TseI	GCWGC	7 cut(s)	77, 179, 266, 403, 427, 929, 1257
TspRI	CASTG	6 cut(s)	291, 449, 490, 692, 966, 1083
Vha464I	CTTAAG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	1157
XapI	RAATTY	2 cut(s)	23, 298
XceI	RCATGY	2 cut(s)	699, 791
XmiI	GTMKAC	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.