RchiOBHm_Chr5g0056771

3-phosphatase and dual-specificity protein phosphatase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
60572630 .. 60573594
965 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33364

Sequence Viewer

Length: 549 bp
ATGACGTCGTCTCGGAAAAAGACACACACAAAAAAAACGCTGCGCGTACGCCTACGACGCCTCAAGCGTCGCTTTTTCCGCCTTGGGTACTGGGAAAAATGTCTTTCTTTCCATTCGGAAGTCGACGATAAACCTCCTGAAGTCAACTTACCTCAGACGTGTAGCAGAGAACTACGAAGAATCCGATGTTATGACACACTTAACATTAATAAGATCTTCTTTGTGATTCCGGGTCAGATTTATCGTCCATCAACAGAAGTTTCTAGGAGTTCATGCAAACAAATCAAGAAAGGGTATTCGAGAACTAGCAGTCCTCGCTATTATCTCTCTTTCATTGAAGGTGATGAAGAAGACAAGAAATCAGATTCAGACGAACCTCGTGTTGTTGTTCAAATAGATACAGAAAGTTCCATGCTATACCAGAAGGCTTATCTTGAATATTATTTTGATAAGCCTGTACAGGTAACCGGAGATGTGCGTGTCATATTCTATCAAAAAAATGAATGGAGGGCGTCTCTTCTACGCTTGCTTCAACACCACTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

21.91

Weight (kDa)

9.74

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 45
AciI CCGC 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 159
AcyI GRCGYC 3 cut(s) 5, 58, 512
AfaI GTAC 3 cut(s) 48, 89, 459
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 4 cut(s) 338, 392, 437, 533
AjiI CACGTC 1 cut(s) 159
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
Alw26I GTCTC 2 cut(s) 15, 519
ApeKI GCWGC 1 cut(s) 40
AseI ATTAAT 1 cut(s) 207
AspLEI GCGC 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 353
BarI GAAGNNNNNNTAC 2 cut(s) 132, 164
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 256
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 15, 519
BfaI CTAG 2 cut(s) 264, 306
BglII AGATCT 1 cut(s) 213
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 499, 531
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 231
BsaHI GRCGYC 3 cut(s) 5, 58, 512
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 230, 468
BsiWI CGTACG 1 cut(s) 46
BsmAI GTCTC 2 cut(s) 15, 519
BsmBI CGTCTC 2 cut(s) 15, 519
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 1 cut(s) 45
BsrGI TGTACA 1 cut(s) 457
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 3 cut(s) 5, 58, 512
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 378
Bst6I CTCTTC 1 cut(s) 522
BstACI GRCGYC 3 cut(s) 5, 58, 512
BstAUI TGTACA 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 1 cut(s) 153
BstEII GGTNACC 1 cut(s) 463
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 2 cut(s) 15, 519
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 3 cut(s) 57, 78, 315
BstPI GGTNACC 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 229
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BtrI CACGTC 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 527
CfoI GCGC 1 cut(s) 45
CseI GACGC 3 cut(s) 56, 66, 501
Csp6I GTAC 3 cut(s) 47, 88, 458
CviAII CATG 2 cut(s) 273, 412
CviJI RGCY 2 cut(s) 428, 454
CviKI_1 RGCY 2 cut(s) 428, 454
CviQI GTAC 3 cut(s) 47, 88, 458
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 463
EcoO65I GGTNACC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
Esp3I CGTCTC 2 cut(s) 15, 519
FaeI CATG 2 cut(s) 276, 415
FaiI YATR 5 cut(s) 192, 274, 413, 418, 485
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 203, 235
FatI CATG 2 cut(s) 272, 411
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 2 cut(s) 264, 306
GlaI GCGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 41
HapII CCGG 2 cut(s) 230, 468
HgaI GACGC 3 cut(s) 56, 66, 501
HhaI GCGC 1 cut(s) 45
Hin1I GRCGYC 3 cut(s) 5, 58, 512
Hin1II CATG 2 cut(s) 276, 415
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 2 cut(s) 124, 145
HindII GTYRAC 2 cut(s) 124, 145
HinfI GANTC 3 cut(s) 180, 226, 365
HpaII CCGG 2 cut(s) 230, 468
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 124, 145
Hpy188I TCNGA 7 cut(s) 15, 118, 156, 185, 237, 364, 370
Hpy188III TCNNGA 4 cut(s) 137, 286, 300, 434
Hpy8I GTNNAC 2 cut(s) 124, 145
Hpy99I CGWCG 4 cut(s) 10, 60, 72, 128
HpyAV CCTTC 2 cut(s) 332, 418
HpyCH4IV ACGT 2 cut(s) 5, 158
HpyCH4V TGCA 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 78, 315
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 5, 158
Hsp92I GRCGYC 3 cut(s) 5, 58, 512
Hsp92II CATG 2 cut(s) 276, 415
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 1 cut(s) 213
LpnPI CCDG 7 cut(s) 76, 150, 243, 434, 446, 468, 481
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 2 cut(s) 264, 306
MaeII ACGT 2 cut(s) 5, 158
MaeIII GTNAC 1 cut(s) 463
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 5 cut(s) 189, 208, 359, 362, 509
MflI RGATCY 1 cut(s) 213
MnlI CCTC 6 cut(s) 71, 144, 162, 324, 387, 501
MseI TTAA 3 cut(s) 201, 207, 547
MspI CCGG 2 cut(s) 230, 468
MspR9I CCNGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 57, 78, 315
NciI CCSGG 1 cut(s) 231
NdeII GATC 1 cut(s) 213
NlaIII CATG 2 cut(s) 276, 415
PcsI WCGNNNNNNNCGW 2 cut(s) 64, 181
PfeI GAWTC 3 cut(s) 180, 226, 365
Pfl23II CGTACG 1 cut(s) 46
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 42
PshBI ATTAAT 1 cut(s) 207
PspEI GGTNACC 1 cut(s) 463
PspLI CGTACG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 213
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 3 cut(s) 48, 89, 459
RsaNI GTAC 3 cut(s) 47, 88, 458
SalI GTCGAC 1 cut(s) 122
SaqAI TTAA 3 cut(s) 201, 207, 547
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 231
SetI ASST 7 cut(s) 8, 136, 154, 161, 343, 379, 465
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SsiI CCGC 1 cut(s) 79
SspI AATATT 1 cut(s) 440
SspMI CTAG 2 cut(s) 264, 306
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 82
TaiI ACGT 2 cut(s) 8, 161
TaqI TCGA 2 cut(s) 123, 299
TatI WGTACW 1 cut(s) 457
TfiI GAWTC 3 cut(s) 180, 226, 365
Tru1I TTAA 3 cut(s) 201, 207, 547
Tru9I TTAA 3 cut(s) 201, 207, 547
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 5 cut(s) 261, 322, 360, 516, 533
Tth111I GACNNNGTC 1 cut(s) 7
VspI ATTAAT 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 264, 306
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.