Rw5G034910

3-phosphatase and dual-specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001990
Physical Location & Seq
Forward (+)
60294067 .. 60301152
7086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034910.1

Sequence Viewer

Length: 1149 bp
ATGGCAATGAAGTTAACAAAGGAAGAAGCCATGACGGCGCCAGGAAAGCTTGAAAGCCTAACCTTACAACACCAACTGATCAGATGCTTAAATAACAGCTTTTACATCCTTAACTTGGTGTCTAAGCAACGGAGGAGAATGCTTGTTGATGGCTATGATCTTGACATGTCTTACATCACCGACCGCATATTGGCAATGTCGTTCCCTGCAGAGCGGATGCGTGCAATGTATCCAAATAATCTCTGGCAGGTCAAGTCTGTGCTTGATATGAGGCATCCAGAACATTACAAGATCTATAACCTCTGCATTGAAGAGCATTACTCTCCATCGCATTTCTATGGCCGTGGGGAGGGGTATCCTTTTGATAATAACCATGTTCCACCTCTTGAAATGGTCAAGCTTTTCTGCGAAAGTGTGCAATCATGGCTTAAGAGTGACCCGGAAAACATTGCTATTATACATCGCATGGCAGGCAAAGGTCGAACACGCTTAATGGTAAGCGCGTATCTGGTCTACTGTGGAATGTCAGCAGAGGAAGCACTTCAACTATATGCTCATAGACGAACCACCAATAATGAAGGTGTCTCGATACCAAGCCAACGTCATTATGTAGGGTACTGGGAAAATTGTCTTTCTTTCCCTTTGGAAGTCAACGATAAACCTTCTAAAGTCAACTTACCTCAGACGTGTAGAAGAGAACAAATCCGATGTTATGACACACTTAACATTAATAAGATCTTCTTTGTGGTCTCTGAGTTGCAAGAAACGAGCAGTCCTCGCTATTATCTCTCTTTCATTGAAGGTGATGAAGAAAACAAGAAATCAGATTCAGACGAACCTCGTGTTGTTGTTCAAATAGATAAAGAAAGTTCCATGCTATACCAGAAGGCCTATCTTGAATATTATTTTGATAAGCCTGTACAGATGTGCGTGTCATATTCTATCAAAAAAAAAATGAATGGAGGGCGTCTTTTCTACGCTTGCTTCAACGCCACTTTCATTAAGAACAGCTTGCTACAGCTCACTGTTCGGGATTTGGATAAAATTGGGAAGAAAGGAAGATCAATATGTGGCCCTAACTTCTGCTTGGAGTTGCTATTTGGTCCTGCCAATGCGAAATACTCACCCTCAAAGCATGATGTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230
Pfam Domains
Protein Families
DSPc PTEN_C2 Y_phosphatase3

Protein Analysis

382

Amino Acids

44.41

Weight (kDa)

8.6

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 37
AccBSI CCGCTC 1 cut(s) 214
AccI GTMKAC 1 cut(s) 513
AccII CGCG 1 cut(s) 503
AciI CCGC 2 cut(s) 184, 214
AcoI YGGCCR 1 cut(s) 340
AcyI GRCGYC 2 cut(s) 38, 967
AfaI GTAC 2 cut(s) 617, 921
AfiI CCNNNNNNNGG 3 cut(s) 115, 190, 349
AflII CTTAAG 1 cut(s) 428
AflIII ACRYGT 2 cut(s) 165, 686
AgsI TTSAA 8 cut(s) 53, 311, 389, 545, 800, 854, 899, 988
AjiI CACGTC 1 cut(s) 687
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 5 cut(s) 49, 99, 400, 1011, 1021
AluI AGCT 5 cut(s) 49, 99, 400, 1011, 1021
Alw26I GTCTC 2 cut(s) 589, 754
AoxI GGCC 3 cut(s) 340, 888, 1072
AseI ATTAAT 1 cut(s) 729
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 2 cut(s) 40, 503
AspS9I GGNCC 2 cut(s) 1073, 1103
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 3 cut(s) 169, 815, 1116
AvaII GGWCC 1 cut(s) 1103
BanI GGYRCC 1 cut(s) 37
BauI CACGAG 1 cut(s) 840
BccI CCATC 2 cut(s) 143, 334
BceAI ACGGC 2 cut(s) 51, 327
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 2 cut(s) 240, 366
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 589, 754
BfmI CTRYAG 2 cut(s) 207, 1016
BfoI RGCGCY 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 428
BfuAI ACCTGC 1 cut(s) 238
BfuI GTATCC 2 cut(s) 240, 366
BglI GCCNNNNNGGC 1 cut(s) 35
BglII AGATCT 2 cut(s) 291, 735
Bme1390I CCNGG 2 cut(s) 42, 440
Bme18I GGWCC 1 cut(s) 1103
BmgBI CACGTC 1 cut(s) 687
BmgT120I GGNCC 2 cut(s) 1073, 1103
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 42, 440
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 3 cut(s) 74, 207, 283
BmuI ACTGGG 1 cut(s) 628
BplI GAGNNNNNCTC 4 cut(s) 305, 337, 760, 792
BpuMI CCSGG 1 cut(s) 440
BsaHI GRCGYC 2 cut(s) 38, 967
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 1 cut(s) 343
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 190, 349
Bse1I ACTGG 1 cut(s) 623
Bse3DI GCAATG 4 cut(s) 12, 201, 231, 447
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 3 cut(s) 105, 222, 274
BseLI CCNNNNNNNGG 3 cut(s) 115, 190, 349
BseMI GCAATG 4 cut(s) 12, 201, 231, 447
BseMII CTCAG 2 cut(s) 695, 744
BseNI ACTGG 1 cut(s) 623
BseRI GAGGAG 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 3 cut(s) 342, 890, 1074
BshNI GGYRCC 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 184
BsiSI CCGG 1 cut(s) 440
BslI CCNNNNNNNGG 3 cut(s) 115, 190, 349
BsmAI GTCTC 2 cut(s) 589, 754
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 3 cut(s) 342, 890, 1074
Bso31I GGTCTC 1 cut(s) 754
Bsp1407I TGTACA 1 cut(s) 919
Bsp143I GATC 5 cut(s) 78, 157, 291, 735, 1061
BspACI CCGC 2 cut(s) 184, 214
BspANI GGCC 3 cut(s) 342, 890, 1074
BspCNI CTCAG 2 cut(s) 694, 745
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 37
BspTI CTTAAG 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 754
BsrBI CCGCTC 1 cut(s) 214
BsrDI GCAATG 4 cut(s) 12, 201, 231, 447
BsrGI TGTACA 1 cut(s) 919
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 5 cut(s) 78, 157, 291, 735, 1061
BssNI GRCGYC 2 cut(s) 38, 967
BssSI CACGAG 1 cut(s) 840
Bst2BI CACGAG 1 cut(s) 840
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 518, 1027
Bst6I CTCTTC 2 cut(s) 306, 688
BstACI GRCGYC 2 cut(s) 38, 967
BstAFI CTTAAG 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 919
BstC8I GCNNGC 4 cut(s) 222, 472, 982, 1013
BstDEI CTNAG 3 cut(s) 123, 681, 753
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 3 cut(s) 105, 222, 274
BstFNI CGCG 1 cut(s) 503
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 2 cut(s) 40, 503
BstKTI GATC 5 cut(s) 81, 160, 294, 738, 1064
BstMAI GTCTC 2 cut(s) 589, 754
BstMBI GATC 5 cut(s) 78, 157, 291, 735, 1061
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 6 cut(s) 35, 46, 424, 471, 536, 777
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 40, 438
BstSFI CTRYAG 2 cut(s) 207, 1016
BstUI CGCG 1 cut(s) 503
BstX2I RGATCY 2 cut(s) 291, 735
BstYI RGATCY 2 cut(s) 291, 735
BsuI GTATCC 2 cut(s) 240, 366
BsuRI GGCC 3 cut(s) 342, 890, 1074
BtgI CCRYGG 1 cut(s) 343
BtgZI GCGATG 2 cut(s) 312, 446
BtrI CACGTC 1 cut(s) 687
BtsCI GGATG 3 cut(s) 105, 222, 274
BtsIMutI CAGTG 1 cut(s) 1023
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 4 cut(s) 222, 472, 982, 1013
CfoI GCGC 2 cut(s) 40, 503
Cfr13I GGNCC 2 cut(s) 1073, 1103
CseI GACGC 1 cut(s) 956
Csp6I GTAC 2 cut(s) 616, 920
CviAII CATG 7 cut(s) 31, 166, 374, 423, 466, 874, 1136
CviQI GTAC 2 cut(s) 616, 920
DdeI CTNAG 3 cut(s) 123, 681, 753
DinI GGCGCC 1 cut(s) 39
DpnI GATC 5 cut(s) 80, 159, 293, 737, 1063
DpnII GATC 5 cut(s) 78, 157, 291, 735, 1061
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 306, 688
EarI CTCTTC 2 cut(s) 306, 688
Eco147I AGGCCT 1 cut(s) 890
Eco31I GGTCTC 1 cut(s) 754
Eco47I GGWCC 1 cut(s) 1103
EcoRII CCWGG 1 cut(s) 40
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
FaeI CATG 7 cut(s) 34, 169, 377, 426, 469, 877, 1139
FalI AAGNNNNNCTT 4 cut(s) 725, 757, 995, 1027
FatI CATG 7 cut(s) 30, 165, 373, 422, 465, 873, 1135
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 513
FokI GGATG 3 cut(s) 92, 229, 261
GlaI GCGC 2 cut(s) 39, 502
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 3 cut(s) 342, 890, 1074
HapII CCGG 1 cut(s) 440
HgaI GACGC 1 cut(s) 956
HhaI GCGC 2 cut(s) 40, 503
Hin1I GRCGYC 2 cut(s) 38, 967
Hin1II CATG 7 cut(s) 34, 169, 377, 426, 469, 877, 1139
Hin6I GCGC 2 cut(s) 38, 501
HinP1I GCGC 2 cut(s) 38, 501
HincII GTYRAC 3 cut(s) 15, 652, 673
HindII GTYRAC 3 cut(s) 15, 652, 673
HindIII AAGCTT 2 cut(s) 47, 398
HinfI GANTC 1 cut(s) 827
HpaI GTTAAC 1 cut(s) 15
HpaII CCGG 1 cut(s) 440
HphI GGTGA 3 cut(s) 169, 815, 1116
Hpy166II GTNNAC 4 cut(s) 15, 514, 652, 673
Hpy188I TCNGA 6 cut(s) 83, 684, 707, 754, 826, 832
Hpy188III TCNNGA 6 cut(s) 161, 278, 386, 586, 896, 1031
Hpy8I GTNNAC 4 cut(s) 15, 514, 652, 673
HpyAV CCTTC 4 cut(s) 572, 672, 794, 880
HpyCH4III ACNGT 2 cut(s) 518, 1027
HpyCH4IV ACGT 2 cut(s) 601, 686
HpyCH4V TGCA 5 cut(s) 209, 224, 306, 418, 760
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 46, 424, 471, 536, 777
HpyF3I CTNAG 3 cut(s) 123, 681, 753
HpySE526I ACGT 2 cut(s) 601, 686
Hsp92I GRCGYC 2 cut(s) 38, 967
Hsp92II CATG 7 cut(s) 34, 169, 377, 426, 469, 877, 1139
HspAI GCGC 2 cut(s) 38, 501
KasI GGCGCC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 78
KspAI GTTAAC 1 cut(s) 15
Kzo9I GATC 5 cut(s) 78, 157, 291, 735, 1061
LguI GCTCTTC 1 cut(s) 306
LweI GCATC 3 cut(s) 74, 207, 283
MaeII ACGT 2 cut(s) 601, 686
MaeIII GTNAC 1 cut(s) 434
MalI GATC 5 cut(s) 80, 159, 293, 737, 1063
MbiI CCGCTC 1 cut(s) 214
MboI GATC 5 cut(s) 78, 157, 291, 735, 1061
MboII GAAGA 7 cut(s) 35, 323, 705, 730, 821, 1063, 1071
MflI RGATCY 2 cut(s) 291, 735
MluCI AATT 2 cut(s) 625, 1044
Mly113I GGCGCC 1 cut(s) 38
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 8 cut(s) 14, 89, 111, 429, 491, 723, 729, 1002
MslI CAYNNNNRTG 1 cut(s) 336
MspCI CTTAAG 1 cut(s) 428
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 2 cut(s) 42, 440
Mva1269I GAATGC 1 cut(s) 144
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 6 cut(s) 35, 46, 424, 471, 536, 777
NarI GGCGCC 1 cut(s) 38
NciI CCSGG 1 cut(s) 440
NdeII GATC 5 cut(s) 78, 157, 291, 735, 1061
NlaIII CATG 7 cut(s) 34, 169, 377, 426, 469, 877, 1139
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 1 cut(s) 169
PceI AGGCCT 1 cut(s) 890
PciI ACATGT 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 306
PctI GAATGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 827
PluTI GGCGCC 1 cut(s) 41
PscI ACATGT 1 cut(s) 165
PshBI ATTAAT 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 1073, 1103
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 2 cut(s) 291, 735
RsaI GTAC 2 cut(s) 617, 921
RsaNI GTAC 2 cut(s) 616, 920
RseI CAYNNNNRTG 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 8 cut(s) 14, 89, 111, 429, 491, 723, 729, 1002
Sau3AI GATC 5 cut(s) 78, 157, 291, 735, 1061
Sau96I GGNCC 2 cut(s) 1073, 1103
ScrFI CCNGG 2 cut(s) 42, 440
SfaNI GCATC 3 cut(s) 74, 207, 283
SfcI CTRYAG 2 cut(s) 207, 1016
SfoI GGCGCC 1 cut(s) 39
SinI GGWCC 1 cut(s) 1103
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 2 cut(s) 625, 1044
SseBI AGGCCT 1 cut(s) 890
SsiI CCGC 2 cut(s) 184, 214
SspDI GGCGCC 1 cut(s) 37
SspI AATATT 1 cut(s) 902
StuI AGGCCT 1 cut(s) 890
StyD4I CCNGG 2 cut(s) 40, 438
TaaI ACNGT 2 cut(s) 518, 1027
TaiI ACGT 2 cut(s) 604, 689
TaqI TCGA 2 cut(s) 481, 587
TasI AATT 2 cut(s) 625, 1044
TatI WGTACW 1 cut(s) 919
TfiI GAWTC 1 cut(s) 827
Tru1I TTAA 8 cut(s) 14, 89, 111, 429, 491, 723, 729, 1002
Tru9I TTAA 8 cut(s) 14, 89, 111, 429, 491, 723, 729, 1002
TscAI CASTG 1 cut(s) 1030
TseFI GTSAC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 6 cut(s) 23, 591, 784, 822, 971, 988
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 1 cut(s) 1030
Vha464I CTTAAG 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 1103
VspI ATTAAT 1 cut(s) 729
XceI RCATGY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.