Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001990

Physical Location & Seq

Genomic Coordinates Reverse (-)

28238002 .. 28246051

Gene Structure 8050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG174300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTCAGCAGAGGAAGCACTTCAACTCTATGCTCATAGACGGACCACCAATAATGAAGGAATTCCGGTTCAGATTTATCGTCCATCAACAGAAGTTTCTAGGAGTTCCTGCAAACAAATCAAGAAAGGGTATTCGAAAATGAGCAGTCCTCGCTATTATCTATCTTTCATTGAAGGTGATGAAGGAGACAAGAAATCCGATTCAGACGAACCTCGTGTTGTTGTTCTGTCTTCAATTGTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753

KEGG Pathways

Metabolic & Signaling

ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230

Pfam Domains

Protein Families

DSPc PTEN_C2 Y_phosphatase3

Protein Analysis

81

Amino Acids

9.16

Weight (kDa)

7.84

Isoelectric Point (pI)

76.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39400
fragaria_vesca	FvH4_6g47530
malus_domestica	MD09G1060900.v1.1 MD17G1056300.v1.1
prunus_persica	Prupe.3G259200_v2.0.a1 Prupe.3G259200_v2.0.a1
pyrus_communis	pycom111g05120
rosa_chinensis	RchiOBHm_Chr2g0166601 RchiOBHm_Chr5g0056771 RchiOBHm_Chr6g0268991
rosa_laevigata	RLG00000013890 RLG00000014080 RLG00000014083 RLG00000021631 RLG00000035126
rosa_multiflora	Rmu_sc0006413.1_g000009 Rmu_sc0008129.1_g000004 Rmu_sc0008222.1_g000004 Rmu_sc0008289.1_g000021
rosa_roxburghii	Rroxscaffold_2G00084730 Rroxscaffold_7G00199110 Rroxscaffold_7G00201530
rosa_rugosa	Rorug02G0524500 Rorug02G0524500 Rorug02G0524600 Rorug05G0301700 Rorug05G0301800 Rorug06G0027200 Rorug06G0043600 Rorug06G0043600 Rorug06G0044100 Rorug06G0044600
rosa_samantha	Rh2AG590400 Rh2BG602400 Rh2CG573100 Rh2DG613000 Rh5DG396900 Rh6AG164800 Rh6AG174300 Rh6BG170000 Rh6CG163500 Rh6DG155300
rosa_wichuraiana	Rw2G049210 Rw5G034910 Rw6G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	23, 173, 234
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
Alw26I	GTCTC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	60
Asp700I	GAANNNNTTC	2 cut(s)	18, 60
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	222
BccI	CCATC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
Bpu14I	TTCGAA	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 150
BstV2I	GAAGAC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	60
FaiI	YATR	2 cut(s)	30, 36
FspBI	CTAG	1 cut(s)	99
HapII	CCGG	1 cut(s)	65
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	3 cut(s)	72, 199, 205
Hpy188III	TCNNGA	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	50, 167, 176
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 150
LpnPI	CCDG	2 cut(s)	78, 121
MaeI	CTAG	1 cut(s)	99
MboII	GAAGA	1 cut(s)	222
MfeI	CAATTG	1 cut(s)	234
MluCI	AATT	2 cut(s)	60, 234
MnlI	CCTC	3 cut(s)	4, 159, 222
MroXI	GAANNNNTTC	2 cut(s)	18, 60
MspI	CCGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	14, 150
NspV	TTCGAA	1 cut(s)	134
PdmI	GAANNNNTTC	2 cut(s)	18, 60
PfeI	GAWTC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	42
SetI	ASST	2 cut(s)	178, 214
SfuI	TTCGAA	1 cut(s)	134
SgeI	CNNG	8 cut(s)	77, 111, 120, 133, 162, 202, 225, 227
SinI	GGWCC	1 cut(s)	42
Sse9I	AATT	2 cut(s)	60, 234
SspMI	CTAG	1 cut(s)	99
TaqI	TCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	60, 234
TfiI	GAWTC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	69, 157, 195
TspGWI	ACGGA	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	42
XapI	RAATTY	1 cut(s)	60
XmnI	GAANNNNTTC	2 cut(s)	18, 60
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.