Rmu_sc0006413.1_g000009

3-phosphatase and dual-specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006413.1
OG0001990
Physical Location & Seq
Forward (+)
79698 .. 82142
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006413.1_g000009.1.cds

Sequence Viewer

Length: 537 bp
atggccagtgaagttgttgcgcgtatccgcgcctctgaagctcagaaagacatcgtgtgtgaacgagtgggtggaagaagaagaggaagaggaagaggctccgatttgaggtttgctcagatccatatttatcgtccatcaacagaagtttctaggagttcctgcaaacagatcaagaaagggtatttgagaacgatcagtcctcgctattatctatctttcattgaaggtgatgaagaagacaagaaatccgattcggacgaacctcgtgttgttgttcaaatggatacagaaagttccatactataccagaaggcctatcttgaatattactttgataagcctgtacagagtccgagacgaaataaaagagggagaagagaacaggggaagaagaatgaagaggaagaggaagagccttcgggattccaaattccaggttatgcgacatggcgttgtcgagattgttattcatttggaatggaagcttatggaatttcagggatgatgagcacagtatcgaaacaaattgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230
Pfam Domains
Protein Families
DSPc PTEN_C2 Y_phosphatase3

Protein Analysis

178

Amino Acids

20.62

Weight (kDa)

8.98

Isoelectric Point (pI)

74.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 22, 30
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 432, 495
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 3 cut(s) 227, 281, 326
AjnI CCWGG 1 cut(s) 436
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 2 cut(s) 41, 488
AluI AGCT 2 cut(s) 41, 488
Alw21I GWGCWC 1 cut(s) 515
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 1 cut(s) 115
AoxI GGCC 2 cut(s) 3, 315
ApoI RAATTY 2 cut(s) 432, 495
AspLEI GCGC 2 cut(s) 22, 32
AsuHPI GGTGA 1 cut(s) 242
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 515
BccI CCATC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 438
BciVI GTATCC 2 cut(s) 35, 280
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 1 cut(s) 153
BfuI GTATCC 2 cut(s) 35, 280
Bme1390I CCNGG 1 cut(s) 438
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 246
BplI GAGNNNNNCTC 2 cut(s) 100, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 6
BseBI CCWGG 1 cut(s) 438
BseGI GGATG 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 56, 131
BseNI ACTGG 1 cut(s) 6
Bsh1236I CGCG 2 cut(s) 22, 30
BshFI GGCC 2 cut(s) 5, 317
BsiHKAI GWGCWC 1 cut(s) 515
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 352
BsmBI CGTCTC 1 cut(s) 352
BsnI GGCC 2 cut(s) 5, 317
Bsp1286I GDGCHC 1 cut(s) 515
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 120, 171, 195
BspACI CCGC 1 cut(s) 28
BspANI GGCC 2 cut(s) 5, 317
BspCNI CTCAG 2 cut(s) 55, 130
BspFNI CGCG 2 cut(s) 22, 30
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 115
BspQI GCTCTTC 1 cut(s) 408
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 1 cut(s) 6
BssMI GATC 3 cut(s) 120, 171, 195
BssSI CACGAG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 7 cut(s) 76, 82, 88, 373, 396, 402, 408
BstAUI TGTACA 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 42, 117
BstF5I GGATG 1 cut(s) 510
BstFNI CGCG 2 cut(s) 22, 30
BstHHI GCGC 2 cut(s) 22, 32
BstKTI GATC 3 cut(s) 123, 174, 198
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 3 cut(s) 120, 171, 195
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 436
BstUI CGCG 2 cut(s) 22, 30
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuI GTATCC 2 cut(s) 35, 280
BsuRI GGCC 2 cut(s) 5, 317
BtsCI GGATG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 13
CfoI GCGC 2 cut(s) 22, 32
Csp6I GTAC 1 cut(s) 347
CviAII CATG 1 cut(s) 450
CviJI RGCY 7 cut(s) 5, 41, 99, 317, 343, 418, 488
CviKI_1 RGCY 7 cut(s) 5, 41, 99, 317, 343, 418, 488
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 42, 117
DpnI GATC 3 cut(s) 122, 173, 197
DpnII GATC 3 cut(s) 120, 171, 195
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 7 cut(s) 76, 82, 88, 373, 396, 402, 408
EarI CTCTTC 7 cut(s) 76, 82, 88, 373, 396, 402, 408
Eco147I AGGCCT 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 1 cut(s) 453
FaiI YATR 6 cut(s) 126, 302, 307, 444, 451, 492
FatI CATG 1 cut(s) 449
FokI GGATG 1 cut(s) 517
FspBI CTAG 1 cut(s) 153
GlaI GCGC 2 cut(s) 21, 31
HaeIII GGCC 2 cut(s) 5, 317
HhaI GCGC 2 cut(s) 22, 32
Hin1II CATG 1 cut(s) 453
Hin6I GCGC 2 cut(s) 20, 30
HinP1I GCGC 2 cut(s) 20, 30
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 3 cut(s) 254, 352, 426
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 7 cut(s) 37, 45, 103, 120, 253, 259, 357
Hpy188III TCNNGA 4 cut(s) 175, 323, 423, 461
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 221, 307, 429
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 42, 117
Hsp92II CATG 1 cut(s) 453
HspAI GCGC 2 cut(s) 20, 30
Kzo9I GATC 3 cut(s) 120, 171, 195
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 8 cut(s) 19, 175, 323, 357, 371, 423, 450, 486
MaeI CTAG 1 cut(s) 153
MalI GATC 3 cut(s) 122, 173, 197
MboI GATC 3 cut(s) 120, 171, 195
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 515
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 432, 495, 528
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 361
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 2 cut(s) 22, 30
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 3 cut(s) 120, 171, 195
NlaIII CATG 1 cut(s) 453
NlaIV GGNNCC 1 cut(s) 100
PceI AGGCCT 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 408
PfeI GAWTC 2 cut(s) 254, 426
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 408
Sau3AI GATC 3 cut(s) 120, 171, 195
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 1 cut(s) 515
SetI ASST 6 cut(s) 43, 113, 232, 268, 442, 490
Sse9I AATT 3 cut(s) 432, 495, 528
SseBI AGGCCT 1 cut(s) 317
SsiI CCGC 1 cut(s) 28
SspI AATATT 1 cut(s) 329
SspMI CTAG 1 cut(s) 153
StuI AGGCCT 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 436
TaaI ACNGT 1 cut(s) 517
TaqI TCGA 2 cut(s) 460, 521
TasI AATT 3 cut(s) 432, 495, 528
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 2 cut(s) 254, 426
TscAI CASTG 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 211, 249, 414, 462
TspRI CASTG 1 cut(s) 13
XapI RAATTY 2 cut(s) 432, 495
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.