Rorug02G0524600

3-phosphatase and dual-specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001990
Physical Location & Seq
Forward (+)
65485947 .. 65486935
989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0524600.1

Sequence Viewer

Length: 897 bp
ATGGGGGGCGAAGGCCGGCGGAGGGGGGAGGTGGTGAGGGTGCAGAAAATCCCAGACGAAGAAGAAGAAGAAGAAGAAGAAGAACAAATGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGGAGATGGCTTCGGAAGACGTGGTTGAGATCGATAGCTTAGAGAAGGGTTTGCTGTCCGGAGGTGGAAATGAAGAAGAGCCGGTTCTGTATGCGGCGTCGTTTGGGGAAATGGAGGAGAATTTCATCAAGTACCAAACAGCGCAGTGGCTTCTGTACTCCGCGCTTTTGATATTGGCGTGGGGGATTGGTTTGTTTATGTTGCTTTATCTTCCGGTTCGGAGGTATATTCTTCGGAAGGATATTCGGTCCAGGAAGCTTTACTTGACATCGAATGCCATCATCTATAAAGTTGCGAGGCCAGTTCCGATTCCATTTTTCGAGGTGTTGAACAAGGAGAAGCATGTTTTGTTGCCTTCAGTGGCTGATGTTGTAATCGAGCAAGGATATCTGCAGTCTCTCTTTGGTGTATACTCGCTTCGAATAGAGCATGTTGGTGTCAGAAGGCCTCCAAGTGATGATGTTCAAATCCATGGCATTGCAAATCCAAATGTTTTTAGGAAGGCAGTGCTAATGCGTCTTTCAAGCATGACGAATGTGGTTTTCTCTAGACAAGTTTCCACAGTTGAAGATGTTCCAAATTTGAGGCTTCAGATGTCCCCATCAAAATCTCTCAGGCATGATTCATTTTCATACCCAGGGGAGCGAACACTACTGCAGAAACTTGAGGAAGTTGGAAGTTCTGTAAAGAAACTTGAGGAAGTTGGAAGTTCTGTAAAGAGGGTTCAAAGTTTAATTGAGGAGCAACACTCTCAAACACCAGAACCTATAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230
Pfam Domains
Protein Families
DSPc PTEN_C2 Y_phosphatase3

Protein Analysis

298

Amino Acids

34.02

Weight (kDa)

4.95

Isoelectric Point (pI)

78.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 120 - 218 2.1e-48 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 531
AccII CGCG 1 cut(s) 284
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 3 cut(s) 19, 215, 282
AcsI RAATTY 2 cut(s) 241, 700
AcuI CTGAAG 2 cut(s) 462, 695
AcyI GRCGYC 1 cut(s) 218
AfaI GTAC 2 cut(s) 254, 278
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 5 cut(s) 451, 587, 645, 689, 848
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 2 cut(s) 371, 757
AluBI AGCT 2 cut(s) 159, 379
AluI AGCT 2 cut(s) 159, 379
Alw26I GTCTC 1 cut(s) 522
AlwNI CAGNNNCTG 1 cut(s) 485
Aor13HI TCCGGA 1 cut(s) 179
AoxI GGCC 3 cut(s) 13, 419, 566
ApoI RAATTY 2 cut(s) 241, 700
Asp700I GAANNNNTTC 1 cut(s) 693
AspLEI GCGC 2 cut(s) 265, 286
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 541
AvaII GGWCC 1 cut(s) 369
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
BbsI GAAGAC 1 cut(s) 144
BccI CCATC 3 cut(s) 121, 407, 730
BciT130I CCWGG 2 cut(s) 373, 759
BcoDI GTCTC 1 cut(s) 522
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 3 cut(s) 512, 776, 888
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 373, 759
Bme18I GGWCC 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 369
BmrFI CCNGG 2 cut(s) 373, 759
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 854, 886
Bpu14I TTCGAA 1 cut(s) 541
BpuEI CTTGAG 2 cut(s) 806, 836
Bsa29I ATCGAT 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 592, 757, 758
BsaWI WCCGGW 2 cut(s) 179, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 2 cut(s) 15, 202
Bse1I ACTGG 1 cut(s) 422
Bse3DI GCAATG 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 179
BseBI CCWGG 2 cut(s) 373, 759
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 592, 757, 758
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 1 cut(s) 748
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 2 cut(s) 251, 875
BsgI GTGCAG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 3 cut(s) 15, 421, 568
BshVI ATCGAT 1 cut(s) 153
BsiSI CCGG 4 cut(s) 16, 180, 203, 335
BslFI GGGAC 1 cut(s) 703
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 703
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 3 cut(s) 15, 421, 568
Bsp119I TTCGAA 1 cut(s) 541
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 1 cut(s) 150
Bsp19I CCATGG 1 cut(s) 592
BspACI CCGC 3 cut(s) 19, 215, 282
BspANI GGCC 3 cut(s) 15, 421, 568
BspCNI CTCAG 1 cut(s) 747
BspDI ATCGAT 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 179
BspFNI CGCG 1 cut(s) 284
BspMAI CTGCAG 2 cut(s) 516, 780
BspQI GCTCTTC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 597
BsrFI RCCGGY 2 cut(s) 15, 202
BsrI ACTGG 1 cut(s) 422
BssAI RCCGGY 2 cut(s) 15, 202
BssECI CCNNGG 3 cut(s) 592, 757, 758
BssMI GATC 1 cut(s) 150
BssNAI GTATAC 1 cut(s) 532
BssNI GRCGYC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 592
Bst1107I GTATAC 1 cut(s) 532
Bst2UI CCWGG 2 cut(s) 373, 759
Bst4CI ACNGT 1 cut(s) 685
Bst6I CTCTTC 2 cut(s) 111, 192
BstACI GRCGYC 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 160, 734
BstDSI CCRYGG 1 cut(s) 592
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 2 cut(s) 265, 286
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 1 cut(s) 150
BstNI CCWGG 2 cut(s) 373, 759
BstNSI RCATGY 2 cut(s) 467, 554
BstSCI CCNGG 2 cut(s) 371, 757
BstSFI CTRYAG 3 cut(s) 512, 776, 888
BstUI CGCG 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 144
BstZ17I GTATAC 1 cut(s) 532
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 3 cut(s) 15, 421, 568
BsuTUI ATCGAT 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 592
BtrI CACGTC 1 cut(s) 142
BtsI GCAGTG 2 cut(s) 272, 633
BtsIMutI CAGTG 3 cut(s) 272, 486, 633
Cac8I GCNNGC 1 cut(s) 17
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 2 cut(s) 265, 286
Cfr10I RCCGGY 2 cut(s) 15, 202
Cfr13I GGNCC 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 2 cut(s) 207, 626
Csp6I GTAC 2 cut(s) 253, 277
CviAII CATG 5 cut(s) 464, 551, 593, 649, 740
CviQI GTAC 2 cut(s) 253, 277
DdeI CTNAG 2 cut(s) 160, 734
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 111, 192
EarI CTCTTC 2 cut(s) 111, 192
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 592
Eco147I AGGCCT 1 cut(s) 568
Eco32I GATATC 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 369
Eco57I CTGAAG 2 cut(s) 462, 695
EcoRII CCWGG 2 cut(s) 371, 757
EcoRV GATATC 1 cut(s) 509
EcoT14I CCWWGG 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 592
FaeI CATG 5 cut(s) 467, 554, 596, 652, 743
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 703
FatI CATG 5 cut(s) 463, 550, 592, 648, 739
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 669
GlaI GCGC 2 cut(s) 264, 285
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 3 cut(s) 15, 421, 568
HapII CCGG 4 cut(s) 16, 180, 203, 335
HgaI GACGC 2 cut(s) 207, 626
HhaI GCGC 2 cut(s) 265, 286
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 5 cut(s) 467, 554, 596, 652, 743
Hin6I GCGC 2 cut(s) 263, 284
HinP1I GCGC 2 cut(s) 263, 284
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 2 cut(s) 430, 743
HpaII CCGG 4 cut(s) 16, 180, 203, 335
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 6 cut(s) 136, 342, 357, 429, 563, 714
Hpy188III TCNNGA 2 cut(s) 180, 669
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 7 cut(s) 5, 115, 160, 352, 486, 558, 616
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 43, 514, 602, 778
HpyF3I CTNAG 2 cut(s) 160, 734
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 5 cut(s) 467, 554, 596, 652, 743
HspAI GCGC 2 cut(s) 263, 284
Kpn2I TCCGGA 1 cut(s) 179
KroI GCCGGC 1 cut(s) 15
KroNI GCCGGC 1 cut(s) 17
Kzo9I GATC 1 cut(s) 150
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 763, 862
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 141
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MluCI AATT 3 cut(s) 241, 700, 855
MmeI TCCRAC 2 cut(s) 775, 805
MroI TCCGGA 1 cut(s) 179
MroNI GCCGGC 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 1 cut(s) 854
MslI CAYNNNNRTG 1 cut(s) 555
MspI CCGG 4 cut(s) 16, 180, 203, 335
MspR9I CCNGG 2 cut(s) 373, 759
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 2 cut(s) 373, 759
MvnI CGCG 1 cut(s) 284
NaeI GCCGGC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 592
NdeII GATC 1 cut(s) 150
NgoMIV GCCGGC 1 cut(s) 15
NlaIII CATG 5 cut(s) 467, 554, 596, 652, 743
NspI RCATGY 2 cut(s) 467, 554
NspV TTCGAA 1 cut(s) 541
PasI CCCWGGG 1 cut(s) 758
PceI AGGCCT 1 cut(s) 568
PciSI GCTCTTC 1 cut(s) 192
PctI GAATGC 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 2 cut(s) 430, 743
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 371, 757
PspGI CCWGG 2 cut(s) 371, 757
PspPI GGNCC 1 cut(s) 369
PsrI GAACNNNNNNTAC 2 cut(s) 828, 860
PstI CTGCAG 2 cut(s) 516, 780
PstNI CAGNNNCTG 1 cut(s) 485
RsaI GTAC 2 cut(s) 254, 278
RsaNI GTAC 2 cut(s) 253, 277
RseI CAYNNNNRTG 1 cut(s) 555
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 854
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 369
ScrFI CCNGG 2 cut(s) 373, 759
SetI ASST 9 cut(s) 33, 144, 161, 187, 347, 381, 447, 889, 895
SfcI CTRYAG 3 cut(s) 512, 776, 888
SfuI TTCGAA 1 cut(s) 541
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 785, 815
SmoI CTYRAG 2 cut(s) 785, 815
Sse9I AATT 3 cut(s) 241, 700, 855
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 3 cut(s) 19, 215, 282
SspMI CTAG 1 cut(s) 669
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 2 cut(s) 371, 757
StyI CCWWGG 1 cut(s) 592
TaaI ACNGT 1 cut(s) 685
TaiI ACGT 1 cut(s) 144
TaqI TCGA 5 cut(s) 153, 392, 441, 498, 541
TaqII GACCGA 1 cut(s) 357
TasI AATT 3 cut(s) 241, 700, 855
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 2 cut(s) 430, 743
Tru1I TTAA 1 cut(s) 854
Tru9I TTAA 1 cut(s) 854
TscAI CASTG 3 cut(s) 272, 486, 633
TspDTI ATGAA 5 cut(s) 104, 207, 235, 735, 741
TspRI CASTG 3 cut(s) 272, 486, 633
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 2 cut(s) 241, 700
XbaI TCTAGA 1 cut(s) 668
XceI RCATGY 2 cut(s) 467, 554
XmiI GTMKAC 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.