Rorug05G0301800

3-phosphatase and dual-specificity protein phosphatase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
35016797 .. 35017396
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0301800.1

Sequence Viewer

Length: 357 bp
ATGAAGCAAAAGATAACCATTGAGGCGAACATTTGGTGTGACAAATGTCGGTCCAAGGCCATGAAAATAGCTGCTGTAGAAGATGGTGTTAAATCAGTGGCTTTCAAGGGGGCAAGGAGAGACCAAATAGAGATAATCGGAGACGATGTTGATGCAACGGGATTGACCGGATTGCTGAGGAAGAAGCTCGGCTATGCAGACTTAGTGAGCTTGGAAGAAATAACCGAAACGAAAGTTGGTAAAGAGGAAAAGAAACCTAGCCCTGATTGTCCAATTAGGGGAAGAAGAGGTTGTCACCACCATGAGATGGAATTGCACATCTATGATCCACCATCAGGGGGTTGCACCATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.08

Weight (kDa)

7.65

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 307
AclWI GGATC 1 cut(s) 320
AfiI CCNNNNNNNGG 4 cut(s) 278, 307, 335, 338
AgsI TTSAA 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 3 cut(s) 71, 187, 210
AluI AGCT 3 cut(s) 71, 187, 210
Alw26I GTCTC 2 cut(s) 114, 135
AlwI GGATC 1 cut(s) 320
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 77, 301, 340
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcoDI GTCTC 2 cut(s) 114, 135
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 142
BoxI GACNNNNGTC 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 307, 335, 338
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 4 cut(s) 278, 307, 335, 338
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 4 cut(s) 278, 307, 335, 338
BsmAI GTCTC 2 cut(s) 114, 135
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 325
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 168
BspPI GGATC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 176, 202
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 2 cut(s) 114, 135
BstMBI GATC 1 cut(s) 325
BstPAI GACNNNNGTC 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 51
CviAII CATG 2 cut(s) 61, 302
CviJI RGCY 7 cut(s) 59, 71, 101, 187, 192, 210, 261
CviKI_1 RGCY 7 cut(s) 59, 71, 101, 187, 192, 210, 261
DdeI CTNAG 2 cut(s) 176, 202
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 2 cut(s) 64, 305
FaiI YATR 5 cut(s) 62, 195, 303, 324, 353
FatI CATG 2 cut(s) 60, 301
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 168
Hin1II CATG 2 cut(s) 64, 305
HpaII CCGG 1 cut(s) 168
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 140
HpyCH4V TGCA 4 cut(s) 155, 197, 316, 345
HpyF3I CTNAG 2 cut(s) 176, 202
Hsp92II CATG 2 cut(s) 64, 305
Kzo9I GATC 1 cut(s) 325
LpnPI CCDG 3 cut(s) 181, 276, 321
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 38, 293
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 5 cut(s) 92, 193, 227, 294, 297
MluCI AATT 2 cut(s) 273, 311
MnlI CCTC 4 cut(s) 16, 171, 238, 281
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 3 cut(s) 300, 321, 350
MspI CCGG 1 cut(s) 168
NdeII GATC 1 cut(s) 325
NlaIII CATG 2 cut(s) 64, 305
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 38, 293
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 1 cut(s) 73
PshAI GACNNNNGTC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 51
RseI CAYNNNNRTG 3 cut(s) 300, 321, 350
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 51
SetI ASST 5 cut(s) 73, 189, 212, 259, 292
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 51
SmiMI CAYNNNNRTG 3 cut(s) 300, 321, 350
Sse9I AATT 2 cut(s) 273, 311
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 54
TaqII GACCGA 1 cut(s) 39
TasI AATT 2 cut(s) 273, 311
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 2 cut(s) 38, 293
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 2 cut(s) 38, 293
TspDTI ATGAA 2 cut(s) 17, 77
TspRI CASTG 1 cut(s) 102
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 51
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.