Rroxscaffold_7G00201530

3-phosphatase and dual-specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001990
Physical Location & Seq
Forward (+)
49181333 .. 49183194
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201530.1

Sequence Viewer

Length: 759 bp
ATGGTAAGCGCGTATCTAGTCTACTGTGGGATGTCAGCAGAGGAAGCACTTCAACTCTATGCTCATAGACGGACCACCAATAATGAAGGAGTCTCGATACCAAGCCAACGTCGTTACGTAGGGTACTGGGAAAATTGTCTTTCTTTCCATTCGGAAGTCGATGATAAACCTCCTGAAGTCAACTTGCCTCGGACGTGTAGCAGAGAATTACGAAGAATCCGATGTTATGACTCACTTAGCATTAATAAGATCTTGTTTGTGGTCTCTGAGTTGCAAGAGATTCCGGTTCAGATTTATCGTCCATCAACAGAAGTTTCTAGGAGTTCCTGCAAACAAATCAAGAAAGGGTATTCGAGAACGAGCAGTCCTCGCTATTATCTATCTTTCATTGAAGGTGATGAAGAAGACAAGAAATCAGATTCAGACGAACCTCATGCTGTTGTACAGATGGATACAGAAAGTTCCATACTATACCAGAAGGCCTATCTTGAATATTACTTCGATAAGCCTGTACAGGTAACCGGAGATGTGAGTGTCATATTTTGTCAAAAGATGAATGGAGGGCGTCTCTTCTATGCTTGCTTCAACACCGCTTTCATTAAGAACAGCTTGCTACAGAGTCCGAGACGAAATAAAAGAGGGAGAAGAGAACAGGGGAAGAAGAATGAAGAGGAAGAGCCTTCGGGATTCGAAATTCCAGGCGTTGTCGAGATTGTTATTCATTTGGAATGGAAGCTTATGGATTTTCAGGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230
Pfam Domains
Protein Families
DSPc PTEN_C2 Y_phosphatase3

Protein Analysis

252

Amino Acids

29.17

Weight (kDa)

6.47

Isoelectric Point (pI)

70.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 591
AcsI RAATTY 1 cut(s) 693
AcuI CTGAAG 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 565
AfaI GTAC 3 cut(s) 125, 444, 513
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 4 cut(s) 53, 392, 491, 586
AjiI CACGTC 1 cut(s) 195
AjnI CCWGG 1 cut(s) 697
AloI GAACNNNNNNTCC 2 cut(s) 349, 381
AluBI AGCT 2 cut(s) 609, 736
AluI AGCT 2 cut(s) 609, 736
Alw26I GTCTC 4 cut(s) 97, 268, 572, 619
AoxI GGCC 1 cut(s) 480
ApoI RAATTY 1 cut(s) 693
AseI ATTAAT 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 407
AsuII TTCGAA 1 cut(s) 690
AvaII GGWCC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 411
BccI CCATC 2 cut(s) 310, 442
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 1 cut(s) 699
BciVI GTATCC 1 cut(s) 445
BcoDI GTCTC 4 cut(s) 97, 268, 572, 619
BfaI CTAG 2 cut(s) 17, 318
BfmI CTRYAG 1 cut(s) 614
BfuI GTATCC 1 cut(s) 445
BglII AGATCT 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 699
Bme18I GGWCC 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 699
BmrI ACTGGG 1 cut(s) 136
BmuI ACTGGG 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 411
BplI GAGNNNNNCTC 4 cut(s) 352, 384, 552, 584
Bpu14I TTCGAA 1 cut(s) 690
BsaAI YACGTR 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 565
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 2 cut(s) 283, 521
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 482
BsiSI CCGG 2 cut(s) 284, 522
BsmAI GTCTC 4 cut(s) 97, 268, 572, 619
BsmBI CGTCTC 2 cut(s) 572, 619
BsnI GGCC 1 cut(s) 482
Bso31I GGTCTC 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 690
Bsp1407I TGTACA 2 cut(s) 442, 511
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 1 cut(s) 591
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 11
BspQI GCTCTTC 1 cut(s) 669
BspT104I TTCGAA 1 cut(s) 690
BspTNI GGTCTC 1 cut(s) 268
BsrGI TGTACA 2 cut(s) 442, 511
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 565
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 4 cut(s) 575, 640, 663, 669
BstACI GRCGYC 1 cut(s) 565
BstAUI TGTACA 2 cut(s) 442, 511
BstBAI YACGTR 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 690
BstC8I GCNNGC 2 cut(s) 580, 611
BstDEI CTNAG 2 cut(s) 236, 267
BstEII GGTNACC 1 cut(s) 517
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 4 cut(s) 97, 268, 572, 619
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 44, 369
BstNI CCWGG 1 cut(s) 699
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 697
BstSFI CTRYAG 1 cut(s) 614
BstSNI TACGTA 1 cut(s) 118
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 482
BtrI CACGTC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 580, 611
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 72
CseI GACGC 1 cut(s) 554
Csp6I GTAC 3 cut(s) 124, 443, 512
CviAII CATG 1 cut(s) 434
CviJI RGCY 6 cut(s) 105, 482, 508, 609, 679, 736
CviKI_1 RGCY 6 cut(s) 105, 482, 508, 609, 679, 736
CviQI GTAC 3 cut(s) 124, 443, 512
DdeI CTNAG 2 cut(s) 236, 267
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eam1104I CTCTTC 4 cut(s) 575, 640, 663, 669
EarI CTCTTC 4 cut(s) 575, 640, 663, 669
Eco105I TACGTA 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 482
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 195
Eco91I GGTNACC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 697
Esp3I CGTCTC 2 cut(s) 572, 619
FaeI CATG 1 cut(s) 437
FaiI YATR 9 cut(s) 60, 66, 228, 435, 467, 472, 539, 576, 740
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FatI CATG 1 cut(s) 433
FblI GTMKAC 1 cut(s) 21
FokI GGATG 1 cut(s) 43
FspBI CTAG 2 cut(s) 17, 318
GlaI GCGC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 482
HapII CCGG 2 cut(s) 284, 522
HgaI GACGC 1 cut(s) 554
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 565
Hin1II CATG 1 cut(s) 437
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 7 cut(s) 90, 216, 230, 280, 419, 619, 687
HpaII CCGG 2 cut(s) 284, 522
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 22, 181
Hpy188I TCNGA 8 cut(s) 154, 192, 221, 268, 291, 418, 424, 624
Hpy188III TCNNGA 7 cut(s) 94, 173, 340, 354, 488, 684, 709
Hpy8I GTNNAC 2 cut(s) 22, 181
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 4 cut(s) 80, 386, 472, 690
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 3 cut(s) 109, 117, 194
HpyCH4V TGCA 2 cut(s) 274, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 369
HpyF3I CTNAG 2 cut(s) 236, 267
HpySE526I ACGT 3 cut(s) 109, 117, 194
Hsp92I GRCGYC 1 cut(s) 565
Hsp92II CATG 1 cut(s) 437
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 249
LguI GCTCTTC 1 cut(s) 669
MaeI CTAG 2 cut(s) 17, 318
MaeII ACGT 3 cut(s) 109, 117, 194
MaeIII GTNAC 2 cut(s) 113, 517
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 9 cut(s) 225, 413, 416, 562, 657, 670, 673, 680, 686
MflI RGATCY 1 cut(s) 249
MluCI AATT 3 cut(s) 133, 206, 693
MlyI GAGTC 3 cut(s) 99, 224, 628
MnlI CCTC 9 cut(s) 34, 180, 198, 378, 441, 554, 632, 664, 746
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 2 cut(s) 243, 600
MspI CCGG 2 cut(s) 284, 522
MspR9I CCNGG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 44, 369
NdeII GATC 1 cut(s) 249
NlaIII CATG 1 cut(s) 437
NspV TTCGAA 1 cut(s) 690
PceI AGGCCT 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 4 cut(s) 216, 280, 419, 687
PleI GAGTC 3 cut(s) 98, 224, 627
PpsI GAGTC 3 cut(s) 98, 224, 627
Ppu21I YACGTR 1 cut(s) 118
PshBI ATTAAT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 697
PspEI GGTNACC 1 cut(s) 517
PspGI CCWGG 1 cut(s) 697
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 249
RsaI GTAC 3 cut(s) 125, 444, 513
RsaNI GTAC 3 cut(s) 124, 443, 512
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 2 cut(s) 243, 600
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 3 cut(s) 99, 224, 628
ScrFI CCNGG 1 cut(s) 699
SetI ASST 9 cut(s) 112, 120, 172, 197, 397, 433, 519, 611, 738
SfcI CTRYAG 1 cut(s) 614
SfuI TTCGAA 1 cut(s) 690
SinI GGWCC 1 cut(s) 72
SnaBI TACGTA 1 cut(s) 118
Sse9I AATT 3 cut(s) 133, 206, 693
SseBI AGGCCT 1 cut(s) 482
SsiI CCGC 1 cut(s) 591
SspI AATATT 1 cut(s) 494
SspMI CTAG 2 cut(s) 17, 318
StuI AGGCCT 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 697
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 3 cut(s) 112, 120, 197
TaqI TCGA 6 cut(s) 95, 159, 353, 501, 690, 708
TasI AATT 3 cut(s) 133, 206, 693
TatI WGTACW 2 cut(s) 442, 511
TfiI GAWTC 4 cut(s) 216, 280, 419, 687
Tru1I TTAA 2 cut(s) 243, 600
Tru9I TTAA 2 cut(s) 243, 600
TspDTI ATGAA 7 cut(s) 99, 376, 414, 569, 586, 681, 710
TspGWI ACGGA 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 72
VspI ATTAAT 1 cut(s) 243
XapI RAATTY 1 cut(s) 693
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 2 cut(s) 17, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.