Rorug05G0301700

3-phosphatase and dual-specificity protein phosphatase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
35013976 .. 35014781
806 bp
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UTR
Exon/CDS
Intron
Rorug05G0301700.1

Sequence Viewer

Length: 249 bp
ATGTTGCAACAAAGAATTGTGATTGAGGTGCAGATGAGAAGCCGAAAACGTCGTGCCAAGGCCATGAAGATAGCTGCTGTCGTTGATGGTGTCAATTCAGTGGCTTTCAATGAGGAAAACAGAGATCAAATCGTGGTGATTGGACATGGAGTTGATCCAGTTGGCTTAGCCCTCTCTTTGAGGAAGAAGGTTGGCCATGCTACCTTGTTGAGTGTGGAAGAATTAGTGGAACAAGCGGAAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.09

Weight (kDa)

6.74

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 193
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AlwI GGATC 1 cut(s) 149
AoxI GGCC 2 cut(s) 60, 193
ApeKI GCWGC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 148
BalI TGGCCA 1 cut(s) 195
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 80
BisI GCNGC 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 50
BshFI GGCC 2 cut(s) 62, 195
BsnI GGCC 2 cut(s) 62, 195
Bsp143I GATC 2 cut(s) 124, 154
Bsp1720I GCTNAGC 1 cut(s) 166
BspACI CCGC 1 cut(s) 236
BspANI GGCC 2 cut(s) 62, 195
BspPI GGATC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 2 cut(s) 124, 154
BssT1I CCWWGG 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 166
BstKTI GATC 2 cut(s) 127, 157
BstMBI GATC 2 cut(s) 124, 154
BstV1I GCAGC 1 cut(s) 61
BsuRI GGCC 2 cut(s) 62, 195
BtsIMutI CAGTG 1 cut(s) 105
CviAII CATG 3 cut(s) 64, 146, 197
CviJI RGCY 7 cut(s) 42, 62, 74, 104, 165, 170, 195
CviKI_1 RGCY 7 cut(s) 42, 62, 74, 104, 165, 170, 195
DdeI CTNAG 1 cut(s) 166
DpnI GATC 2 cut(s) 126, 156
DpnII GATC 2 cut(s) 124, 154
EaeI YGGCCR 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 67, 149, 200
FaiI YATR 3 cut(s) 65, 147, 198
FatI CATG 3 cut(s) 63, 145, 196
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 2 cut(s) 62, 195
Hin1II CATG 3 cut(s) 67, 149, 200
HphI GGTGA 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 7, 31
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 3 cut(s) 67, 149, 200
Kzo9I GATC 2 cut(s) 124, 154
LpnPI CCDG 1 cut(s) 171
Lsp1109I GCAGC 1 cut(s) 61
MaeII ACGT 1 cut(s) 49
MalI GATC 2 cut(s) 126, 156
MboI GATC 2 cut(s) 124, 154
MboII GAAGA 3 cut(s) 79, 196, 230
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 3 cut(s) 15, 94, 221
MluNI TGGCCA 1 cut(s) 195
MnlI CCTC 4 cut(s) 19, 106, 174, 182
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 195
NdeII GATC 2 cut(s) 124, 154
NlaIII CATG 3 cut(s) 67, 149, 200
PkrI GCNGC 1 cut(s) 76
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 124, 154
SetI ASST 5 cut(s) 30, 52, 76, 192, 206
SgeI CNNG 9 cut(s) 65, 70, 76, 145, 158, 170, 209, 217, 245
Sse9I AATT 3 cut(s) 15, 94, 221
SsiI CCGC 1 cut(s) 236
StyI CCWWGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 52
TasI AATT 3 cut(s) 15, 94, 221
TscAI CASTG 1 cut(s) 105
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.