Rroxscaffold_2G00084730

3-phosphatase and dual-specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001990
Physical Location & Seq
Reverse (-)
7232032 .. 7234555
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084730.1

Sequence Viewer

Length: 1113 bp
ATGCTTGTTGCTGGCTATGATCTTGACATGTCTTACATCACCGACCGCATATTGGCAATGTCGTTCCCCGCAGAGCGAATGCGTGCAATGTATCGAAATCCTCTCTGGCAGGTTAAGTCTGTGCTTGATATGAGGCATCCAGAACATTACAAGATCTATAACCTCTGCATTGAACAACATTATGATCCATCGCATTTCTATGGCCGAGTGGAGAGGTATCCTTTTGACGATAACCATGTTCCACCTCTTGAAATGGTCAAGCTTTTCTGCGAAAGTGTGCAATCATGGATCAAGAGTGACCCAGAAAACATTGCTGTTATACACTGCATGGCAGGCAAAGGTCGAACGGGCTTAATGGTATGCGCGTATCTAGTCTACTGTGGGATGTCAGGAGAAGAAGCACTTCAACTCTATGCTCATAGACGGACCACCAATAATGAAGGAGTCTCAATACCAAGCCAACGTCGTTACGTAGGGTACTGGGAAAATTGTCTCTCTTTCCCTTCGGAAGTCAATGATGAACCTCCTGAAGTCAACTTACCTCAAATGTATAGCAGAGAATTGCGAAGAATCCGATTCTATGACACTCTTAACATTGATAAGATCTTCTTTGTGGTCTCTGAGTTGCAAGAGATTCCGGGTCAGATTTATCGTCCATCAATAGAAGTTTCCAGGAGTTCTTGCAAACAAATCAAGAAAGGGTATTCGAGAACAAGCAGTCCGCGCTATTATATTTCTTTCATTGAAGGTGATGAAGAAGAGAAGAAATCAGATTCAGATGAACCTCGTGTTGTTGTTCAAATGGATACAGAAAGTTCCATACTATACCAGAAGGCCTGTCTTGAATATTACTTTGATAAGCCTGTAAAGGTAACCGGAGATGTGCGTGTCATATTCTATCAAAAAATGAATGGTGGGCGTCTCTTCTACGCTTGCTTCAACACCGCTTTCATTAAGAACAGCTTGCTACAGCTCACTGTTCGGGATTTGGATAAAATTGGGAAGAAAGGAAGATCAATATGTGGCCCTAACTTCTGCTTGGAGTTGCTATTTGGTCCTGCCAATGCGAAACACTCACCCTCAACTCCACATGACAATCATGATGTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230
Pfam Domains
Protein Families
DSPc PTEN_C2 Y_phosphatase3

Protein Analysis

370

Amino Acids

42.97

Weight (kDa)

6.57

Isoelectric Point (pI)

65.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTP-NADK PF22741 38 - 146 1.9e-07 DSP-PTPase phosphatase fused to NAD+ Kinase
Tc-R-P PF22785 70 - 128 7.3e-09 Polymorphic toxin system, DSP-PTPase phosphatase
PTP-SAK PF22784 73 - 136 5.5e-09 Swiss Army Knife protein, DSP-PTPase phosphatase domain
PTEN_C2 PF10409 270 - 352 1.2e-12 C2 domain of PTEN tumour-suppressor protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 375
AccII CGCG 2 cut(s) 365, 724
AciI CCGC 4 cut(s) 46, 69, 722, 945
AclWI GGATC 2 cut(s) 179, 296
AcoI YGGCCR 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 919
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 7 cut(s) 173, 251, 407, 746, 800, 845, 940
AjnI CCWGG 1 cut(s) 671
AloI GAACNNNNNNTCC 2 cut(s) 703, 735
AluBI AGCT 3 cut(s) 262, 963, 973
AluI AGCT 3 cut(s) 262, 963, 973
Alw26I GTCTC 4 cut(s) 451, 497, 622, 926
AlwI GGATC 2 cut(s) 179, 296
AoxI GGCC 3 cut(s) 202, 834, 1024
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 2 cut(s) 365, 726
AspS9I GGNCC 3 cut(s) 426, 1025, 1055
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 3 cut(s) 31, 761, 1068
AvaII GGWCC 2 cut(s) 426, 1055
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
BauI CACGAG 1 cut(s) 786
BccI CCATC 2 cut(s) 196, 664
BciT130I CCWGG 1 cut(s) 673
BciVI GTATCC 2 cut(s) 228, 799
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 4 cut(s) 451, 497, 622, 926
BfaI CTAG 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 968
BfuAI ACCTGC 1 cut(s) 100
BfuI GTATCC 2 cut(s) 228, 799
BglII AGATCT 2 cut(s) 153, 603
Bme1390I CCNGG 2 cut(s) 639, 673
Bme18I GGWCC 2 cut(s) 426, 1055
BmgT120I GGNCC 3 cut(s) 426, 1025, 1055
BmrFI CCNGG 2 cut(s) 639, 673
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 1 cut(s) 145
BmuI ACTGGG 1 cut(s) 490
BpuMI CCSGG 1 cut(s) 639
BsaAI YACGTR 1 cut(s) 472
BsaHI GRCGYC 1 cut(s) 919
BsaI GGTCTC 1 cut(s) 622
BsaWI WCCGGW 1 cut(s) 875
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 485
Bse3DI GCAATG 3 cut(s) 63, 93, 309
BseBI CCWGG 1 cut(s) 673
BseGI GGATG 2 cut(s) 136, 390
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 3 cut(s) 63, 93, 309
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 1 cut(s) 485
Bsh1236I CGCG 2 cut(s) 365, 724
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 3 cut(s) 204, 836, 1026
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 638, 876
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 4 cut(s) 451, 497, 622, 926
BsmBI CGTCTC 1 cut(s) 926
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 3 cut(s) 204, 836, 1026
Bso31I GGTCTC 1 cut(s) 622
Bsp143I GATC 6 cut(s) 19, 153, 184, 288, 603, 1013
BspACI CCGC 4 cut(s) 46, 69, 722, 945
BspANI GGCC 3 cut(s) 204, 836, 1026
BspCNI CTCAG 1 cut(s) 613
BspFNI CGCG 2 cut(s) 365, 724
BspHI TCATGA 1 cut(s) 1099
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 179, 296
BspTNI GGTCTC 1 cut(s) 622
BsrDI GCAATG 3 cut(s) 63, 93, 309
BsrI ACTGG 1 cut(s) 485
BssMI GATC 6 cut(s) 19, 153, 184, 288, 603, 1013
BssNI GRCGYC 1 cut(s) 919
BssSI CACGAG 1 cut(s) 786
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 1 cut(s) 673
Bst4CI ACNGT 2 cut(s) 380, 979
Bst6I CTCTTC 2 cut(s) 753, 929
BstACI GRCGYC 1 cut(s) 919
BstBAI YACGTR 1 cut(s) 472
BstC8I GCNNGC 5 cut(s) 13, 84, 334, 934, 965
BstDEI CTNAG 1 cut(s) 621
BstEII GGTNACC 1 cut(s) 871
BstF5I GGATG 2 cut(s) 136, 390
BstFNI CGCG 2 cut(s) 365, 724
BstHHI GCGC 2 cut(s) 365, 726
BstKTI GATC 6 cut(s) 22, 156, 187, 291, 606, 1016
BstMAI GTCTC 4 cut(s) 451, 497, 622, 926
BstMBI GATC 6 cut(s) 19, 153, 184, 288, 603, 1013
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 333, 723
BstNI CCWGG 1 cut(s) 673
BstNSI RCATGY 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 871
BstSCI CCNGG 2 cut(s) 637, 671
BstSFI CTRYAG 1 cut(s) 968
BstSNI TACGTA 1 cut(s) 472
BstUI CGCG 2 cut(s) 365, 724
BstX2I RGATCY 2 cut(s) 153, 603
BstYI RGATCY 2 cut(s) 153, 603
BsuI GTATCC 2 cut(s) 228, 799
BsuRI GGCC 3 cut(s) 204, 836, 1026
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 2 cut(s) 136, 390
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 322, 975
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 5 cut(s) 13, 84, 334, 934, 965
CciI TCATGA 1 cut(s) 1099
CfoI GCGC 2 cut(s) 365, 726
Cfr13I GGNCC 3 cut(s) 426, 1025, 1055
CseI GACGC 1 cut(s) 908
Csp6I GTAC 1 cut(s) 478
CviAII CATG 6 cut(s) 28, 236, 285, 328, 1091, 1100
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 621
DpnI GATC 6 cut(s) 21, 155, 186, 290, 605, 1015
DpnII GATC 6 cut(s) 19, 153, 184, 288, 603, 1013
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 753, 929
EarI CTCTTC 2 cut(s) 753, 929
Eco105I TACGTA 1 cut(s) 472
Eco147I AGGCCT 1 cut(s) 836
Eco31I GGTCTC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 426, 1055
Eco57I CTGAAG 1 cut(s) 549
Eco91I GGTNACC 1 cut(s) 871
EcoO65I GGTNACC 1 cut(s) 871
EcoRII CCWGG 1 cut(s) 671
Esp3I CGTCTC 1 cut(s) 926
FaeI CATG 6 cut(s) 31, 239, 288, 331, 1094, 1103
FalI AAGNNNNNCTT 6 cut(s) 387, 419, 593, 625, 947, 979
FatI CATG 6 cut(s) 27, 235, 284, 327, 1090, 1099
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 375
FokI GGATG 2 cut(s) 123, 397
FspBI CTAG 1 cut(s) 371
GlaI GCGC 2 cut(s) 364, 725
HaeIII GGCC 3 cut(s) 204, 836, 1026
HapII CCGG 2 cut(s) 638, 876
HgaI GACGC 1 cut(s) 908
HhaI GCGC 2 cut(s) 365, 726
Hin1I GRCGYC 1 cut(s) 919
Hin1II CATG 6 cut(s) 31, 239, 288, 331, 1094, 1103
Hin6I GCGC 2 cut(s) 363, 724
HinP1I GCGC 2 cut(s) 363, 724
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 5 cut(s) 444, 570, 576, 634, 773
HpaII CCGG 2 cut(s) 638, 876
HphI GGTGA 3 cut(s) 31, 761, 1068
Hpy166II GTNNAC 2 cut(s) 376, 535
Hpy188I TCNGA 6 cut(s) 508, 575, 622, 645, 772, 778
Hpy8I GTNNAC 2 cut(s) 376, 535
Hpy99I CGWCG 1 cut(s) 468
HpyAV CCTTC 4 cut(s) 434, 513, 740, 826
HpyCH4III ACNGT 2 cut(s) 380, 979
HpyCH4IV ACGT 2 cut(s) 463, 471
HpyCH4V TGCA 6 cut(s) 86, 168, 280, 327, 628, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 333, 723
HpyF3I CTNAG 1 cut(s) 621
HpySE526I ACGT 2 cut(s) 463, 471
Hsp92I GRCGYC 1 cut(s) 919
Hsp92II CATG 6 cut(s) 31, 239, 288, 331, 1094, 1103
HspAI GCGC 2 cut(s) 363, 724
Kzo9I GATC 6 cut(s) 19, 153, 184, 288, 603, 1013
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 371
MaeII ACGT 2 cut(s) 463, 471
MaeIII GTNAC 3 cut(s) 296, 467, 871
MalI GATC 6 cut(s) 21, 155, 186, 290, 605, 1015
MboI GATC 6 cut(s) 19, 153, 184, 288, 603, 1013
MboII GAAGA 9 cut(s) 407, 579, 598, 767, 770, 775, 916, 1015, 1023
MflI RGATCY 2 cut(s) 153, 603
MluCI AATT 3 cut(s) 487, 560, 996
MlyI GAGTC 1 cut(s) 453
MnlI CCTC 9 cut(s) 111, 126, 173, 207, 255, 534, 552, 795, 1090
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 4 cut(s) 114, 353, 591, 954
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 2 cut(s) 638, 876
MspR9I CCNGG 2 cut(s) 639, 673
Mva1269I GAATGC 1 cut(s) 84
MvaI CCWGG 1 cut(s) 673
MvnI CGCG 2 cut(s) 365, 724
MwoI GCNNNNNNNGC 2 cut(s) 333, 723
NciI CCSGG 1 cut(s) 639
NdeII GATC 6 cut(s) 19, 153, 184, 288, 603, 1013
NlaIII CATG 6 cut(s) 31, 239, 288, 331, 1094, 1103
NmeAIII GCCGAG 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 31
PagI TCATGA 1 cut(s) 1099
PceI AGGCCT 1 cut(s) 836
PciI ACATGT 1 cut(s) 27
PctI GAATGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 4 cut(s) 570, 576, 634, 773
PfoI TCCNGGA 1 cut(s) 671
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
Ppu21I YACGTR 1 cut(s) 472
PscI ACATGT 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 671
PspEI GGTNACC 1 cut(s) 871
PspGI CCWGG 1 cut(s) 671
PspPI GGNCC 3 cut(s) 426, 1025, 1055
PsuI RGATCY 2 cut(s) 153, 603
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 4 cut(s) 114, 353, 591, 954
Sau3AI GATC 6 cut(s) 19, 153, 184, 288, 603, 1013
Sau96I GGNCC 3 cut(s) 426, 1025, 1055
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 2 cut(s) 639, 673
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 968
SinI GGWCC 2 cut(s) 426, 1055
SmiMI CAYNNNNRTG 1 cut(s) 198
SnaBI TACGTA 1 cut(s) 472
Sse9I AATT 3 cut(s) 487, 560, 996
SseBI AGGCCT 1 cut(s) 836
SsiI CCGC 4 cut(s) 46, 69, 722, 945
SspI AATATT 1 cut(s) 848
SspMI CTAG 1 cut(s) 371
StuI AGGCCT 1 cut(s) 836
StyD4I CCNGG 2 cut(s) 637, 671
TaaI ACNGT 2 cut(s) 380, 979
TaiI ACGT 2 cut(s) 466, 474
TaqI TCGA 3 cut(s) 94, 343, 707
TasI AATT 3 cut(s) 487, 560, 996
TfiI GAWTC 4 cut(s) 570, 576, 634, 773
Tru1I TTAA 4 cut(s) 114, 353, 591, 954
Tru9I TTAA 4 cut(s) 114, 353, 591, 954
TscAI CASTG 2 cut(s) 329, 982
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 7 cut(s) 453, 534, 730, 768, 795, 923, 940
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 2 cut(s) 329, 982
VpaK11BI GGWCC 2 cut(s) 426, 1055
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.