Rorug06G0027200

3-phosphatase and dual-specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001990
Physical Location & Seq
Forward (+)
3292091 .. 3292901
811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0027200.1

Sequence Viewer

Length: 696 bp
ATGGCCGGTAGGGTCAATAGAGGTCGCCAGAAAATTAAAATGAAGAAAATAGAAAGCGAGAGTAATTGCCAGGTTACTTTCTCTAAGAGAAAGTCTTGCATTTTCAAAAAGTCGAGTGAGCTAAGCACGCTCACAGGTGCAGAGATCGCCATAATCATAAGTTCTCCCGGAAATAAGACATTCTCATTCGGGCACCCTTCTGTGCAGGCCATCGTTGACCGCTATCTGTCTCCGGCCCCTGAACCCCCAGCTAGCACAGACATCACTGAGAAGTTCTTGGAAAATTTTCGCATCATGAAATTGAACAGTCTCAACGCGGAGTGCACTGCCTTAAATGAGGAGCTGTTGAACTGTAGACAGCAGGGAGAGGTGCTTAAAAGGATTGCGAGGGCTGGCCAGGCTGACGAGTGGTATGGGAGGTCCTTAGCCAGCATGGACGAGGAACAACGAGACTCACTTAAGAAAGACTTGATTAAGCTACATGGTATTGTGGCTCAACGGTCTAAAGAATTGTATCAAAGGCAAATTGAGCTGATGCAACAGCACGCTGCAATGGGGGCTGCTGGGGGATTTAGGGATTTTATGTCACCGAGTGTCGCCCCTATTAGGTCTTTTCATGAGGGGAGTTCATCGAGCCAGGGCGCGATGCATCCCGATGCTGCTTCATCTTCCTCCTCTTTCTGGCAGGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009555 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230
Pfam Domains
Protein Families
DSPc PTEN_C2 Y_phosphatase3

Protein Analysis

231

Amino Acids

25.59

Weight (kDa)

9.19

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 16 - 63 1.8e-19 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 355
AccII CGCG 2 cut(s) 317, 644
AciI CCGC 2 cut(s) 220, 317
AcoI YGGCCR 2 cut(s) 3, 394
AcsI RAATTY 1 cut(s) 283
AdeI CACNNNGTG 1 cut(s) 593
AfiI CCNNNNNNNGG 2 cut(s) 606, 681
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 3 cut(s) 106, 304, 349
AjnI CCWGG 3 cut(s) 69, 396, 636
AluBI AGCT 5 cut(s) 121, 251, 343, 478, 532
AluI AGCT 5 cut(s) 121, 251, 343, 478, 532
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 3 cut(s) 234, 314, 444
Alw44I GTGCAC 1 cut(s) 322
AoxI GGCC 4 cut(s) 3, 207, 234, 394
ApaLI GTGCAC 1 cut(s) 322
ApeKI GCWGC 3 cut(s) 548, 560, 659
ApoI RAATTY 1 cut(s) 283
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 644
AspS9I GGNCC 2 cut(s) 235, 420
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 579
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 420
BaeGI GKGCMC 2 cut(s) 195, 326
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 3 cut(s) 535, 547, 646
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 3 cut(s) 71, 398, 638
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 3 cut(s) 234, 314, 444
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 352
BfrI CTTAAG 1 cut(s) 458
BisI GCNGC 3 cut(s) 549, 561, 660
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 3 cut(s) 550, 562, 661
Bme1390I CCNGG 4 cut(s) 71, 168, 398, 638
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 235, 420
BmiI GGNNCC 2 cut(s) 194, 237
BmrFI CCNGG 4 cut(s) 71, 168, 398, 638
BmsI GCATC 5 cut(s) 300, 525, 636, 646, 658
BmtI GCTAGC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 424
Bpu1102I GCTNAGC 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 637
Bsc4I CCNNNNNNNGG 2 cut(s) 606, 681
Bse118I RCCGGY 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 3 cut(s) 71, 398, 638
BseDI CCNNGG 1 cut(s) 637
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 2 cut(s) 606, 681
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 2 cut(s) 353, 664
BseSI GKGCMC 2 cut(s) 195, 326
BseXI GCAGC 3 cut(s) 535, 547, 646
BseYI CCCAGC 2 cut(s) 247, 563
BsgI GTGCAG 2 cut(s) 159, 224
Bsh1236I CGCG 2 cut(s) 317, 644
BshFI GGCC 4 cut(s) 5, 209, 236, 396
BshNI GGYRCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 3 cut(s) 6, 168, 233
BslI CCNNNNNNNGG 2 cut(s) 606, 681
BsmAI GTCTC 3 cut(s) 234, 314, 444
BsnI GGCC 4 cut(s) 5, 209, 236, 396
Bsp1286I GDGCHC 2 cut(s) 195, 326
Bsp143I GATC 1 cut(s) 144
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 2 cut(s) 220, 317
BspANI GGCC 4 cut(s) 5, 209, 236, 396
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 2 cut(s) 317, 644
BspHI TCATGA 2 cut(s) 294, 616
BspLI GGNNCC 2 cut(s) 194, 237
BspOI GCTAGC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 192
BspTI CTTAAG 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 558
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 637
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 3 cut(s) 71, 398, 638
Bst4CI ACNGT 3 cut(s) 308, 353, 501
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 7 cut(s) 128, 207, 253, 394, 430, 546, 687
BstDEI CTNAG 4 cut(s) 84, 122, 267, 424
BstF5I GGATG 1 cut(s) 649
BstFNI CGCG 2 cut(s) 317, 644
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 3 cut(s) 234, 314, 444
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 5 cut(s) 127, 146, 398, 529, 557
BstNI CCWGG 3 cut(s) 71, 398, 638
BstSCI CCNGG 4 cut(s) 69, 166, 396, 636
BstSFI CTRYAG 1 cut(s) 352
BstSLI GKGCMC 2 cut(s) 195, 326
BstUI CGCG 2 cut(s) 317, 644
BstV1I GCAGC 3 cut(s) 535, 547, 646
BsuRI GGCC 4 cut(s) 5, 209, 236, 396
BtgZI GCGATG 1 cut(s) 659
BtsCI GGATG 1 cut(s) 649
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 264, 324
Cac8I GCNNGC 7 cut(s) 128, 207, 253, 394, 430, 546, 687
CciI TCATGA 2 cut(s) 294, 616
CfoI GCGC 1 cut(s) 644
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 2 cut(s) 235, 420
CviAII CATG 4 cut(s) 295, 433, 482, 617
DdeI CTNAG 4 cut(s) 84, 122, 267, 424
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DraIII CACNNNGTG 1 cut(s) 593
EaeI YGGCCR 2 cut(s) 3, 394
Eco47I GGWCC 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 420
EcoRII CCWGG 3 cut(s) 69, 396, 636
EcoT22I ATGCAT 1 cut(s) 651
FaeI CATG 4 cut(s) 298, 436, 485, 620
FaiI YATR 8 cut(s) 152, 158, 296, 414, 434, 483, 584, 618
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FatI CATG 4 cut(s) 294, 432, 481, 616
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 549, 561, 660
FokI GGATG 1 cut(s) 636
Fsp4HI GCNGC 3 cut(s) 549, 561, 660
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 643
GluI GCNGC 3 cut(s) 549, 561, 660
GsaI CCCAGC 2 cut(s) 251, 567
HaeIII GGCC 4 cut(s) 5, 209, 236, 396
HapII CCGG 3 cut(s) 6, 168, 233
HhaI GCGC 1 cut(s) 644
Hin1II CATG 4 cut(s) 298, 436, 485, 620
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 452
HpaII CCGG 3 cut(s) 6, 168, 233
HphI GGTGA 1 cut(s) 579
Hpy166II GTNNAC 3 cut(s) 217, 324, 356
Hpy188III TCNNGA 3 cut(s) 295, 617, 653
Hpy8I GTNNAC 3 cut(s) 217, 324, 356
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 3 cut(s) 308, 353, 501
HpyCH4V TGCA 7 cut(s) 99, 140, 205, 324, 538, 551, 649
HpyF10VI GCNNNNNNNGC 5 cut(s) 127, 146, 398, 529, 557
HpyF3I CTNAG 4 cut(s) 84, 122, 267, 424
Hsp92II CATG 4 cut(s) 298, 436, 485, 620
HspAI GCGC 1 cut(s) 642
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 3 cut(s) 535, 547, 646
LweI GCATC 5 cut(s) 300, 525, 636, 646, 658
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 73, 585
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 2 cut(s) 55, 660
MhlI GDGCHC 2 cut(s) 195, 326
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 7 cut(s) 33, 64, 283, 299, 509, 525, 690
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 9 cut(s) 14, 331, 361, 381, 411, 433, 613, 682, 685
Mox20I TGGCCA 1 cut(s) 396
Mph1103I ATGCAT 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 396
MseI TTAA 5 cut(s) 36, 332, 375, 459, 474
MslI CAYNNNNRTG 1 cut(s) 654
Msp20I TGGCCA 1 cut(s) 396
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 3 cut(s) 6, 168, 233
MspR9I CCNGG 4 cut(s) 71, 168, 398, 638
MvaI CCWGG 3 cut(s) 71, 398, 638
MvnI CGCG 2 cut(s) 317, 644
MwoI GCNNNNNNNGC 5 cut(s) 127, 146, 398, 529, 557
NciI CCSGG 1 cut(s) 168
NdeII GATC 1 cut(s) 144
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 4 cut(s) 298, 436, 485, 620
NlaIV GGNNCC 2 cut(s) 194, 237
NmuCI GTSAC 1 cut(s) 585
NsiI ATGCAT 1 cut(s) 651
PagI TCATGA 2 cut(s) 294, 616
PdmI GAANNNNTTC 1 cut(s) 285
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 3 cut(s) 550, 562, 661
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PpuMI RGGWCCY 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 3 cut(s) 69, 396, 636
PspFI CCCAGC 2 cut(s) 247, 563
PspGI CCWGG 3 cut(s) 69, 396, 636
PspN4I GGNNCC 2 cut(s) 194, 237
PspPI GGNCC 2 cut(s) 235, 420
PspPPI RGGWCCY 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 5 cut(s) 36, 332, 375, 459, 474
SatI GCNGC 3 cut(s) 549, 561, 660
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 235, 420
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 4 cut(s) 71, 168, 398, 638
SduI GDGCHC 2 cut(s) 195, 326
SfaNI GCATC 5 cut(s) 300, 525, 636, 646, 658
SfcI CTRYAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 7 cut(s) 33, 64, 283, 299, 509, 525, 690
SsiI CCGC 2 cut(s) 220, 317
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 4 cut(s) 69, 166, 396, 636
TaaI ACNGT 3 cut(s) 308, 353, 501
TaqI TCGA 2 cut(s) 113, 632
TasI AATT 7 cut(s) 33, 64, 283, 299, 509, 525, 690
Tru1I TTAA 5 cut(s) 36, 332, 375, 459, 474
Tru9I TTAA 5 cut(s) 36, 332, 375, 459, 474
TscAI CASTG 2 cut(s) 271, 331
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 3 cut(s) 548, 560, 659
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 5 cut(s) 56, 311, 605, 618, 654
TspRI CASTG 2 cut(s) 271, 331
Vha464I CTTAAG 1 cut(s) 458
VneI GTGCAC 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.