Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Forward (+)

67243403 .. 67245986

Gene Structure 2584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGACTTTAAGGTGGTTGTGGGAATCATGTGCTATTGCCAACCTTTTCTTTCTTCATGTTCTGGACTACGATGACGCTTTATTGCTGCTCAATATGGTTTCAACAATGAAGAAGTCGATCTTTGATGAACAAACTAACAAGGCCTTAAGGAAATTGCAAAAGAATGCTCAAAAGAAGAGAAGGCATCATGATGTGGTTCGAGCTGAATGGGCAAATCATGTTATACAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

77

Amino Acids

9.24

Weight (kDa)

9.58

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	28 - 65	1e-05	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflII	CTTAAG	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	102
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	145
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
BmsI	GCATC	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	145
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	170
BstAFI	CTTAAG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	187
CseI	GACGC	1 cut(s)	83
CviAII	CATG	4 cut(s)	27, 56, 188, 218
CviJI	RGCY	2 cut(s)	143, 203
CviKI_1	RGCY	2 cut(s)	143, 203
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco147I	AGGCCT	1 cut(s)	143
FaeI	CATG	4 cut(s)	30, 59, 191, 221
FaiI	YATR	6 cut(s)	28, 57, 95, 189, 219, 224
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	4 cut(s)	26, 55, 187, 217
Fnu4HI	GCNGC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	143
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	30, 59, 191, 221
HinfI	GANTC	1 cut(s)	23
Hpy188III	TCNNGA	2 cut(s)	62, 188
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
Hsp92II	CATG	4 cut(s)	30, 59, 191, 221
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	193
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	3 cut(s)	44, 121, 187
MluCI	AATT	1 cut(s)	152
MseI	TTAA	2 cut(s)	8, 146
MslI	CAYNNNNRTG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	4 cut(s)	30, 59, 191, 221
PagI	TCATGA	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	8, 146
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	117
SetI	ASST	3 cut(s)	14, 45, 205
SfaNI	GCATC	1 cut(s)	193
SgeI	CNNG	7 cut(s)	39, 68, 74, 151, 200, 212, 230
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	152
SseBI	AGGCCT	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	116, 199
TasI	AATT	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	8, 146
Tru9I	TTAA	2 cut(s)	8, 146
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	44, 122, 141
Vha464I	CTTAAG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.