Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Reverse (-)

59414680 .. 59416818

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG365000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAACCTTGGACATAAGAATCGGGTTGTTGGTGCAACTGCTCTAAATGATCGAAGTAGTCGCTCTCACAGCTGCTTGACTGTTCACGTTCAAGGACAGGATTTGACAACTGGATCTATTCTTCGTGGCTGTATGCACCTGGTTGATCTTGCGGGAAGTGAGAGGGTAGACAAATCCGAGGTAACAGGGGATAGATTGAAGGAAGCACAACATATTAATAGATCTCTCTCAGCTTTGGGTGATGTGATTGCTTCCCTTGCACAAAAGAATCCTCATGTTCCTTATAGGAATAGCAAGCTAACACAGTTGCTCCAAGATTCACTTGGTGGACAGGCCAAGACGCTTATGTTTGTTCACATAAGCCCTGAGCCAGATGCTATTGGTGAAAGTATAAGTACACTTAAGTTTGCTGAACGAGTAGCCACAGTTGAGCTTGGTGCTGCCAAAGTAAACAAAGATGGTGCAGATGTGAAAGCTCTCAAAGAACAGATTGCTGGTCTTAGGGCAGCACTGGCCAGGAGAGAAGAGGAAGCCGAACAACGCCCTGTTCTAGGCAGCTCTGATAAATACAAGACAAAAGCAGGGGAATTGTCACCTCTTCCTCTGAACCATCAGGGTACAGACATCATGGGAGAACAGTTTGGCTTCCGGCAACCAATGGGAAATCTTGGCAATATTGAGCTTCATAACAACTCTGCCCCAAGGCAAAAAAGACAAAACTTTGATGTTGATGAGCTACTAGCAAATTCACCTCCATGGCCCCCAGTTAAGAGTCCTGGCCAGAATCGTGGGGATGATGATAAAGACATGGGCTCAGGTGACTGGGTCGATAAAGTTATGGTGAACAAGCAAGAAGTAAGCAGAGTTGGAAATCCCTTGGGAGGCTGGGGAGCAGACAATGAGAACTTATCTGATGCTTTCTACCAAAAATATCTCCAAGATTCTTCTAAAATTTATCCAGAACAATCCTACAACATGTTCACAGCAAGCAACGGGTTCAGTGTTGCTAGTAATGATGATATGGATGACCTTGATGCTGCCACTAGCGATTCTTCAGAGCCAGATTTGCTCTGGCAATTCAATCAAACTAAACTTATCAGCACAGGCAACGGCATTGGGTCTAAAACCAAGAAACCTAACGCAAAGCCAGTAAAAAGCCCAGAACTAAGCAAGCATTTGAATCCTTCTCTGGGCCCTTCGCCTTCACGGAAACCTTTGAATGGGTTGCCACATAGGACAGCACGGCAGCCAGCTCCAACAGCTGAGATGAAACGCAAAGCTGCTCATAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

431

Amino Acids

46.9

Weight (kDa)

8.61

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	1 - 142	6.8e-55	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	2 cut(s)	513, 778
AcsI	RAATTY	2 cut(s)	745, 951
AcuI	CTGAAG	1 cut(s)	1038
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	2 cut(s)	397, 619
AfiI	CCNNNNNNNGG	4 cut(s)	551, 881, 1190, 1220
AflII	CTTAAG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	5 cut(s)	92, 199, 1081, 1180, 1219
AjnI	CCWGG	3 cut(s)	138, 515, 775
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	5 cut(s)	333, 513, 758, 778, 1192
ApaI	GGGCCC	1 cut(s)	1196
ApeKI	GCWGC	7 cut(s)	72, 440, 506, 555, 1037, 1246, 1280
ApoI	RAATTY	2 cut(s)	745, 951
AseI	ATTAAT	1 cut(s)	216
AspS9I	GGNCC	3 cut(s)	759, 1192, 1193
AsuHPI	GGTGA	6 cut(s)	251, 395, 585, 741, 830, 853
BaeGI	GKGCMC	1 cut(s)	1196
BalI	TGGCCA	2 cut(s)	515, 780
BanII	GRGCYC	2 cut(s)	815, 1196
BbvI	GCAGC	7 cut(s)	59, 427, 518, 567, 1024, 1258, 1267
BccI	CCATC	2 cut(s)	452, 618
BceAI	ACGGC	2 cut(s)	1126, 1259
BciT130I	CCWGG	3 cut(s)	140, 517, 777
BfaI	CTAG	4 cut(s)	551, 740, 1008, 1044
BfrI	CTTAAG	1 cut(s)	401
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	7 cut(s)	73, 441, 507, 556, 1038, 1247, 1281
BlsI	GCNGC	7 cut(s)	74, 442, 508, 557, 1039, 1248, 1282
Bme1390I	CCNGG	3 cut(s)	140, 517, 777
BmgT120I	GGNCC	3 cut(s)	759, 1192, 1193
BmiI	GGNNCC	2 cut(s)	761, 1194
BmrFI	CCNGG	3 cut(s)	140, 517, 777
BmrI	ACTGGG	2 cut(s)	758, 832
BmsI	GCATC	3 cut(s)	364, 904, 1024
BmuI	ACTGGG	2 cut(s)	758, 832
Bpu10I	CCTNAGC	2 cut(s)	366, 814
BsaJI	CCNNGG	5 cut(s)	7, 177, 701, 755, 876
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	4 cut(s)	551, 881, 1190, 1220
Bse1I	ACTGG	5 cut(s)	115, 516, 764, 827, 1148
BseBI	CCWGG	3 cut(s)	140, 517, 777
BseDI	CCNNGG	5 cut(s)	7, 177, 701, 755, 876
BseGI	GGATG	2 cut(s)	799, 1030
BseLI	CCNNNNNNNGG	4 cut(s)	551, 881, 1190, 1220
BseMII	CTCAG	4 cut(s)	243, 357, 828, 1254
BseNI	ACTGG	5 cut(s)	115, 516, 764, 827, 1148
BseSI	GKGCMC	1 cut(s)	1196
BseXI	GCAGC	7 cut(s)	59, 427, 518, 567, 1024, 1258, 1267
BseYI	CCCAGC	1 cut(s)	885
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	5 cut(s)	335, 515, 760, 780, 1194
BsiSI	CCGG	1 cut(s)	649
BslI	CCNNNNNNNGG	4 cut(s)	551, 881, 1190, 1220
BsnI	GGCC	5 cut(s)	335, 515, 760, 780, 1194
Bsp120I	GGGCCC	1 cut(s)	1192
Bsp1286I	GDGCHC	2 cut(s)	815, 1196
Bsp143I	GATC	4 cut(s)	49, 113, 145, 221
Bsp19I	CCATGG	1 cut(s)	755
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	5 cut(s)	335, 515, 760, 780, 1194
BspCNI	CTCAG	4 cut(s)	242, 358, 827, 1255
BspLI	GGNNCC	2 cut(s)	761, 1194
BspPI	GGATC	1 cut(s)	121
BspTI	CTTAAG	1 cut(s)	401
BsrI	ACTGG	5 cut(s)	115, 516, 764, 827, 1148
BssECI	CCNNGG	5 cut(s)	7, 177, 701, 755, 876
BssMI	GATC	4 cut(s)	49, 113, 145, 221
BssT1I	CCWWGG	4 cut(s)	7, 701, 755, 876
Bst2UI	CCWGG	3 cut(s)	140, 517, 777
Bst4CI	ACNGT	4 cut(s)	82, 306, 427, 639
Bst6I	CTCTTC	2 cut(s)	519, 603
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	4 cut(s)	296, 988, 1172, 1251
BstDEI	CTNAG	6 cut(s)	229, 366, 500, 814, 1166, 1263
BstDSI	CCRYGG	1 cut(s)	755
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	799, 1030
BstKTI	GATC	4 cut(s)	52, 116, 148, 224
BstMBI	GATC	4 cut(s)	49, 113, 145, 221
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 257, 512, 1066, 1259
BstNI	CCWGG	3 cut(s)	140, 517, 777
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	3 cut(s)	138, 515, 775
BstSLI	GKGCMC	1 cut(s)	1196
BstV1I	GCAGC	7 cut(s)	59, 427, 518, 567, 1024, 1258, 1267
BstX2I	RGATCY	2 cut(s)	113, 221
BstXI	CCANNNNNNTGG	1 cut(s)	788
BstYI	RGATCY	2 cut(s)	113, 221
BsuRI	GGCC	5 cut(s)	335, 515, 760, 780, 1194
BtgI	CCRYGG	1 cut(s)	755
BtsCI	GGATG	2 cut(s)	799, 1030
BtsIMutI	CAGTG	2 cut(s)	509, 1006
Cac8I	GCNNGC	4 cut(s)	296, 988, 1172, 1251
Cfr13I	GGNCC	3 cut(s)	759, 1192, 1193
CseI	GACGC	1 cut(s)	349
CsiI	ACCWGGT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	396, 618
CviAII	CATG	5 cut(s)	275, 628, 756, 808, 976
CviQI	GTAC	2 cut(s)	396, 618
DdeI	CTNAG	6 cut(s)	229, 366, 500, 814, 1166, 1263
DpnI	GATC	4 cut(s)	51, 115, 147, 223
DpnII	GATC	4 cut(s)	49, 113, 145, 221
DraIII	CACNNNGTG	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	513, 778
Eam1104I	CTCTTC	2 cut(s)	519, 603
EarI	CTCTTC	2 cut(s)	519, 603
Eco130I	CCWWGG	4 cut(s)	7, 701, 755, 876
Eco24I	GRGCYC	2 cut(s)	815, 1196
Eco57I	CTGAAG	1 cut(s)	1038
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	1193
EcoRII	CCWGG	3 cut(s)	138, 515, 775
EcoT14I	CCWWGG	4 cut(s)	7, 701, 755, 876
EcoT38I	GRGCYC	2 cut(s)	815, 1196
ErhI	CCWWGG	4 cut(s)	7, 701, 755, 876
FaeI	CATG	5 cut(s)	278, 631, 759, 811, 979
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	5 cut(s)	274, 627, 755, 807, 975
FauI	CCCGC	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	7 cut(s)	73, 441, 507, 556, 1038, 1247, 1281
FokI	GGATG	2 cut(s)	806, 1037
FriOI	GRGCYC	2 cut(s)	815, 1196
Fsp4HI	GCNGC	7 cut(s)	73, 441, 507, 556, 1038, 1247, 1281
FspBI	CTAG	4 cut(s)	551, 740, 1008, 1044
GluI	GCNGC	7 cut(s)	73, 441, 507, 556, 1038, 1247, 1281
GsaI	CCCAGC	1 cut(s)	889
HaeIII	GGCC	5 cut(s)	335, 515, 760, 780, 1194
HapII	CCGG	1 cut(s)	649
HgaI	GACGC	1 cut(s)	349
Hin1II	CATG	5 cut(s)	278, 631, 759, 811, 979
HinfI	GANTC	8 cut(s)	19, 268, 317, 772, 784, 941, 1049, 1180
HpaII	CCGG	1 cut(s)	649
HphI	GGTGA	6 cut(s)	251, 395, 585, 741, 830, 853
Hpy166II	GTNNAC	8 cut(s)	85, 169, 329, 355, 398, 451, 844, 981
Hpy188I	TCNGA	5 cut(s)	178, 562, 606, 913, 1057
Hpy188III	TCNNGA	1 cut(s)	959
Hpy8I	GTNNAC	8 cut(s)	85, 169, 329, 355, 398, 451, 844, 981
HpyAV	CCTTC	4 cut(s)	193, 1194, 1206, 1212
HpyCH4III	ACNGT	4 cut(s)	82, 306, 427, 639
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	35, 136, 260, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 257, 512, 1066, 1259
HpyF3I	CTNAG	6 cut(s)	229, 366, 500, 814, 1166, 1263
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	5 cut(s)	278, 631, 759, 811, 979
Kzo9I	GATC	4 cut(s)	49, 113, 145, 221
LmnI	GCTCC	3 cut(s)	315, 890, 1258
Lsp1109I	GCAGC	7 cut(s)	59, 427, 518, 567, 1024, 1258, 1267
LweI	GCATC	3 cut(s)	364, 904, 1024
MabI	ACCWGGT	1 cut(s)	138
MaeI	CTAG	4 cut(s)	551, 740, 1008, 1044
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	181, 591, 818
MalI	GATC	4 cut(s)	51, 115, 147, 223
MboI	GATC	4 cut(s)	49, 113, 145, 221
MboII	GAAGA	5 cut(s)	113, 536, 590, 936, 1044
MflI	RGATCY	2 cut(s)	113, 221
MhlI	GDGCHC	2 cut(s)	815, 1196
MlsI	TGGCCA	2 cut(s)	515, 780
MluCI	AATT	4 cut(s)	587, 745, 951, 1076
MluNI	TGGCCA	2 cut(s)	515, 780
MlyI	GAGTC	1 cut(s)	781
MmeI	TCCRAC	2 cut(s)	847, 1280
MnlI	CCTC	8 cut(s)	156, 172, 282, 520, 606, 612, 762, 875
Mox20I	TGGCCA	2 cut(s)	515, 780
MscI	TGGCCA	2 cut(s)	515, 780
MseI	TTAA	3 cut(s)	216, 402, 768
MslI	CAYNNNNRTG	1 cut(s)	754
Msp20I	TGGCCA	2 cut(s)	515, 780
MspA1I	CMGCKG	2 cut(s)	72, 1262
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	1 cut(s)	649
MspR9I	CCNGG	3 cut(s)	140, 517, 777
MvaI	CCWGG	3 cut(s)	140, 517, 777
MwoI	GCNNNNNNNGC	5 cut(s)	69, 257, 512, 1066, 1259
NcoI	CCATGG	1 cut(s)	755
NdeII	GATC	4 cut(s)	49, 113, 145, 221
NlaIII	CATG	5 cut(s)	278, 631, 759, 811, 979
NlaIV	GGNNCC	2 cut(s)	761, 1194
NmuCI	GTSAC	2 cut(s)	591, 818
NspI	RCATGY	1 cut(s)	979
PciI	ACATGT	1 cut(s)	975
PfeI	GAWTC	7 cut(s)	19, 268, 317, 784, 941, 1049, 1180
PflFI	GACNNNGTC	1 cut(s)	824
PkrI	GCNGC	7 cut(s)	74, 442, 508, 557, 1039, 1248, 1282
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
PscI	ACATGT	1 cut(s)	975
PshBI	ATTAAT	1 cut(s)	216
Psp6I	CCWGG	3 cut(s)	138, 515, 775
PspFI	CCCAGC	1 cut(s)	885
PspGI	CCWGG	3 cut(s)	138, 515, 775
PspN4I	GGNNCC	2 cut(s)	761, 1194
PspOMI	GGGCCC	1 cut(s)	1192
PspPI	GGNCC	3 cut(s)	759, 1192, 1193
PsuI	RGATCY	2 cut(s)	113, 221
PsyI	GACNNNGTC	1 cut(s)	824
PvuII	CAGCTG	2 cut(s)	72, 1262
RsaI	GTAC	2 cut(s)	397, 619
RsaNI	GTAC	2 cut(s)	396, 618
RseI	CAYNNNNRTG	1 cut(s)	754
SaqAI	TTAA	3 cut(s)	216, 402, 768
SatI	GCNGC	7 cut(s)	73, 441, 507, 556, 1038, 1247, 1281
Sau3AI	GATC	4 cut(s)	49, 113, 145, 221
Sau96I	GGNCC	3 cut(s)	759, 1192, 1193
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	3 cut(s)	140, 517, 777
SduI	GDGCHC	2 cut(s)	815, 1196
SexAI	ACCWGGT	1 cut(s)	138
SfaNI	GCATC	3 cut(s)	364, 904, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	754
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	4 cut(s)	587, 745, 951, 1076
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	4 cut(s)	551, 740, 1008, 1044
StyD4I	CCNGG	3 cut(s)	138, 515, 775
StyI	CCWWGG	4 cut(s)	7, 701, 755, 876
TaaI	ACNGT	4 cut(s)	82, 306, 427, 639
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	52, 828
TasI	AATT	4 cut(s)	587, 745, 951, 1076
TatI	WGTACW	1 cut(s)	395
TfiI	GAWTC	7 cut(s)	19, 268, 317, 784, 941, 1049, 1180
Tru1I	TTAA	3 cut(s)	216, 402, 768
Tru9I	TTAA	3 cut(s)	216, 402, 768
TscAI	CASTG	2 cut(s)	516, 1006
TseFI	GTSAC	2 cut(s)	591, 818
TseI	GCWGC	7 cut(s)	72, 440, 506, 555, 1037, 1246, 1280
Tsp45I	GTSAC	2 cut(s)	591, 818
TspDTI	ATGAA	3 cut(s)	17, 674, 1283
TspGWI	ACGGA	1 cut(s)	1222
TspRI	CASTG	2 cut(s)	516, 1006
Tth111I	GACNNNGTC	1 cut(s)	824
Vha464I	CTTAAG	1 cut(s)	401
VspI	ATTAAT	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	549
XapI	RAATTY	2 cut(s)	745, 951
XceI	RCATGY	1 cut(s)	979
XcmI	CCANNNNNNNNNTGG	2 cut(s)	320, 1068
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	4 cut(s)	551, 740, 1008, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.