Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Reverse (-)

59417255 .. 59420889

Gene Structure 3635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG365100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCGGCAGACGGAGGGGCGCTTTCGATGTTTTCGGTTGTGGAGGATGTGCTTCAGCAGCACGGTACTAGTCGAACCGGAGATCTTGATTTAGTGGAGTCTAGAAAAGCTGAGCAAGCCGCATCGAGAAGAAATGAGGCGGCTGGGTGGCTTAGAAAGGTGATTGGTGTCGTCGTGGCTAAAGATTTGCCGGCAGAGCCTTCTGAGGAAGAGTTCAGGCTTGGATTGAGAAGTGGGATTATCCTCTGCAATGCTATCAATAAGGTTCAACCCGGAGCAGTGCCCAAGGTGGTGGAAAGTCCATCTGATTCAGCTTTGATTCCTGATGGAGCATTGTCGGCGTTCCAATACTTTGAGAATCTGAGGAACTTCCTTGTTGCTATTGAGGGGATGGGGCTGCCTACATTTGAGGCATCTGATCTTGAACAAGGAGGCAAATCTGCAAGGGTTGTAAATACAGTTCTGGCGCTCAAATCCTACAGTGAGTGGAAACATACGGGAGGAAATGGGACATGGAAATTCGGTGGAAATGTAAAACCGACCACGTCCGTCAAGTCTTTTGTGAGAAAAAACTCGGAGCCATTTATGAATTCCTTGTCAAGGACCTCATCAATGAATGAAAAATCTTCGAACTCTTTCACCTCTGATCTCGATTCTAATCAAATGACTAGTTCCCGCTCCTTGAGTATGCTTGTCCGTGCAGTTCTGTTAGATAAGAAGCCTGAAGACGTTCCAATGTTGGTAGAGTCTGTTCTAAACAAGGTTGTGGAGCAATTTGAGCAACGCCTTTCCAGCCAATATGAATTGACTGGACCCAGAGAGCTTACAGAGAAAAGCCAAGGTGTAAATTATAGGGCTTTGGGAGACTTGTTTCTCATAGCAGATCAAAGAAAGGACACTTTCCACTATGATGTTTCTGTTCAGATGATTGAGATCTACAACGAGCAAGTCCGGGATCTCCTTGTTACTGATGGAGCTAACAAAAGATATCCTTTACTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

334

Amino Acids

36.78

Weight (kDa)

5.49

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	43 - 161	2.6e-13	Calponin homology (CH) domain
Kinesin	PF00225	270 - 326	1.7e-09	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	678
AciI	CCGC	4 cut(s)	5, 120, 140, 676
AclWI	GGATC	1 cut(s)	963
AcsI	RAATTY	2 cut(s)	518, 589
AcuI	CTGAAG	2 cut(s)	38, 744
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	600
AgsI	TTSAA	2 cut(s)	269, 425
AhlI	ACTAGT	3 cut(s)	68, 668, 997
AjiI	CACGTC	1 cut(s)	546
AluBI	AGCT	4 cut(s)	110, 314, 823, 977
AluI	AGCT	4 cut(s)	110, 314, 823, 977
Alw26I	GTCTC	1 cut(s)	858
AlwI	GGATC	1 cut(s)	963
ApeKI	GCWGC	2 cut(s)	58, 397
ApoI	RAATTY	2 cut(s)	518, 589
Asp700I	GAANNNNTTC	2 cut(s)	635, 729
AspLEI	GCGC	2 cut(s)	22, 469
AspS9I	GGNCC	2 cut(s)	603, 812
AsuC2I	CCSGG	2 cut(s)	273, 953
AsuHPI	GGTGA	2 cut(s)	172, 631
AsuII	TTCGAA	1 cut(s)	629
AvaII	GGWCC	2 cut(s)	603, 812
BaeGI	GKGCMC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	70, 384
BccI	CCATC	4 cut(s)	310, 320, 385, 965
BcnI	CCSGG	2 cut(s)	273, 953
BcoDI	GTCTC	1 cut(s)	858
BcuI	ACTAGT	3 cut(s)	68, 668, 997
BfaI	CTAG	4 cut(s)	69, 102, 669, 998
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	2 cut(s)	23, 470
BglII	AGATCT	2 cut(s)	82, 933
BisI	GCNGC	5 cut(s)	6, 59, 120, 141, 398
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	5 cut(s)	7, 60, 121, 142, 399
Bme1390I	CCNGG	2 cut(s)	273, 953
Bme18I	GGWCC	2 cut(s)	603, 812
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	603, 812
BmiI	GGNNCC	2 cut(s)	579, 814
BmrFI	CCNGG	2 cut(s)	273, 953
BmsI	GCATC	2 cut(s)	131, 422
BpiI	GAAGAC	1 cut(s)	732
Bpu1102I	GCTNAGC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	629
BpuEI	CTTGAG	1 cut(s)	703
BpuMI	CCSGG	2 cut(s)	273, 953
BsaBI	GATNNNNATC	2 cut(s)	657, 932
BsaJI	CCNNGG	2 cut(s)	285, 838
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	814
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	2 cut(s)	657, 932
BseDI	CCNNGG	2 cut(s)	285, 838
BseGI	GGATG	2 cut(s)	52, 396
BseJI	GATNNNNATC	2 cut(s)	657, 932
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	3 cut(s)	102, 195, 353
BseNI	ACTGG	1 cut(s)	814
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	70, 384
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	720
BsiSI	CCGG	4 cut(s)	78, 191, 273, 952
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmAI	GTCTC	1 cut(s)	858
BsmFI	GGGAC	1 cut(s)	523
Bsp119I	TTCGAA	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	6 cut(s)	82, 418, 646, 883, 933, 955
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	4 cut(s)	5, 120, 140, 676
BspCNI	CTCAG	3 cut(s)	103, 196, 354
BspLI	GGNNCC	2 cut(s)	579, 814
BspPI	GGATC	1 cut(s)	963
BspT104I	TTCGAA	1 cut(s)	629
BsrBI	CCGCTC	1 cut(s)	678
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	814
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	285, 838
BssMI	GATC	6 cut(s)	82, 418, 646, 883, 933, 955
BssT1I	CCWWGG	2 cut(s)	285, 838
Bst4CI	ACNGT	3 cut(s)	65, 460, 482
Bst6I	CTCTTC	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	629
BstC8I	GCNNGC	2 cut(s)	117, 192
BstDEI	CTNAG	4 cut(s)	111, 152, 204, 362
BstENI	CCTNNNNNAGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	52, 396
BstH2I	RGCGCY	2 cut(s)	23, 470
BstHHI	GCGC	2 cut(s)	22, 469
BstKTI	GATC	6 cut(s)	85, 421, 649, 886, 936, 958
BstMAI	GTCTC	1 cut(s)	858
BstMBI	GATC	6 cut(s)	82, 418, 646, 883, 933, 955
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 116, 196, 338, 778, 792
BstSCI	CCNGG	2 cut(s)	271, 951
BstSFI	CTRYAG	1 cut(s)	478
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	70, 384
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	3 cut(s)	82, 933, 955
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	3 cut(s)	82, 933, 955
BtrI	CACGTC	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	52, 396
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	285, 487
Cac8I	GCNNGC	2 cut(s)	117, 192
CfoI	GCGC	2 cut(s)	22, 469
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	603, 812
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	1 cut(s)	513
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	4 cut(s)	111, 152, 204, 362
DpnI	GATC	6 cut(s)	84, 420, 648, 885, 935, 957
DpnII	GATC	6 cut(s)	82, 418, 646, 883, 933, 955
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	285, 838
Eco32I	GATATC	1 cut(s)	989
Eco47I	GGWCC	2 cut(s)	603, 812
Eco57I	CTGAAG	2 cut(s)	38, 744
EcoNI	CCTNNNNNAGG	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	589
EcoRV	GATATC	1 cut(s)	989
EcoT14I	CCWWGG	2 cut(s)	285, 838
ErhI	CCWWGG	2 cut(s)	285, 838
FaeI	CATG	1 cut(s)	516
FaiI	YATR	8 cut(s)	495, 514, 587, 689, 801, 852, 878, 909
FalI	AAGNNNNNCTT	1 cut(s)	976
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	1 cut(s)	512
FauI	CCCGC	1 cut(s)	683
Fnu4HI	GCNGC	5 cut(s)	6, 59, 120, 141, 398
FokI	GGATG	2 cut(s)	59, 403
Fsp4HI	GCNGC	5 cut(s)	6, 59, 120, 141, 398
FspBI	CTAG	4 cut(s)	69, 102, 669, 998
GlaI	GCGC	2 cut(s)	21, 468
GluI	GCNGC	5 cut(s)	6, 59, 120, 141, 398
GsaI	CCCAGC	1 cut(s)	147
HaeII	RGCGCY	2 cut(s)	23, 470
HapII	CCGG	4 cut(s)	78, 191, 273, 952
HhaI	GCGC	2 cut(s)	22, 469
Hin1II	CATG	1 cut(s)	516
Hin6I	GCGC	2 cut(s)	20, 467
HinP1I	GCGC	2 cut(s)	20, 467
HinfI	GANTC	6 cut(s)	98, 308, 319, 358, 653, 746
HpaII	CCGG	4 cut(s)	78, 191, 273, 952
HphI	GGTGA	2 cut(s)	172, 631
Hpy188I	TCNGA	7 cut(s)	205, 307, 363, 418, 577, 646, 924
Hpy188III	TCNNGA	6 cut(s)	86, 102, 126, 323, 422, 650
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	3 cut(s)	65, 460, 482
HpyCH4IV	ACGT	2 cut(s)	545, 729
HpyCH4V	TGCA	3 cut(s)	249, 443, 701
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 116, 196, 338, 778, 792
HpyF3I	CTNAG	4 cut(s)	111, 152, 204, 362
HpySE526I	ACGT	2 cut(s)	545, 729
Hsp92II	CATG	1 cut(s)	516
HspAI	GCGC	2 cut(s)	20, 467
KroI	GCCGGC	1 cut(s)	190
KroNI	GCCGGC	1 cut(s)	192
Kzo9I	GATC	6 cut(s)	82, 418, 646, 883, 933, 955
LmnI	GCTCC	6 cut(s)	275, 329, 577, 683, 769, 974
Lsp1109I	GCAGC	2 cut(s)	70, 384
LweI	GCATC	2 cut(s)	131, 422
MaeI	CTAG	4 cut(s)	69, 102, 669, 998
MaeII	ACGT	2 cut(s)	545, 729
MaeIII	GTNAC	1 cut(s)	964
MalI	GATC	6 cut(s)	84, 420, 648, 885, 935, 957
MbiI	CCGCTC	1 cut(s)	678
MboI	GATC	6 cut(s)	82, 418, 646, 883, 933, 955
MboII	GAAGA	4 cut(s)	141, 221, 618, 737
MflI	RGATCY	3 cut(s)	82, 933, 955
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	5 cut(s)	518, 589, 773, 803, 847
MlyI	GAGTC	2 cut(s)	107, 755
MroNI	GCCGGC	1 cut(s)	190
MroXI	GAANNNNTTC	2 cut(s)	635, 729
MslI	CAYNNNNRTG	1 cut(s)	909
MspI	CCGG	4 cut(s)	78, 191, 273, 952
MspR9I	CCNGG	2 cut(s)	273, 953
MwoI	GCNNNNNNNGC	6 cut(s)	58, 116, 196, 338, 778, 792
NaeI	GCCGGC	1 cut(s)	192
NciI	CCSGG	2 cut(s)	273, 953
NdeII	GATC	6 cut(s)	82, 418, 646, 883, 933, 955
NgoMIV	GCCGGC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	516
NlaIV	GGNNCC	2 cut(s)	579, 814
NspV	TTCGAA	1 cut(s)	629
PdiI	GCCGGC	1 cut(s)	192
PdmI	GAANNNNTTC	2 cut(s)	635, 729
PfeI	GAWTC	4 cut(s)	308, 319, 358, 653
PflFI	GACNNNGTC	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	951
PkrI	GCNGC	5 cut(s)	7, 60, 121, 142, 399
PleI	GAGTC	2 cut(s)	106, 754
PpsI	GAGTC	2 cut(s)	106, 754
PpuMI	RGGWCCY	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	579, 814
PspPI	GGNCC	2 cut(s)	603, 812
PspPPI	RGGWCCY	1 cut(s)	603
PsrI	GAACNNNNNNTAC	4 cut(s)	444, 476, 735, 767
PsuI	RGATCY	3 cut(s)	82, 933, 955
PsyI	GACNNNGTC	1 cut(s)	544
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	909
SatI	GCNGC	5 cut(s)	6, 59, 120, 141, 398
Sau3AI	GATC	6 cut(s)	82, 418, 646, 883, 933, 955
Sau96I	GGNCC	2 cut(s)	603, 812
SchI	GAGTC	2 cut(s)	107, 755
ScrFI	CCNGG	2 cut(s)	273, 953
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	131, 422
SfcI	CTRYAG	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	629
SinI	GGWCC	2 cut(s)	603, 812
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
SpeI	ACTAGT	3 cut(s)	68, 668, 997
Sse9I	AATT	5 cut(s)	518, 589, 773, 803, 847
SsiI	CCGC	4 cut(s)	5, 120, 140, 676
SspMI	CTAG	4 cut(s)	69, 102, 669, 998
StyD4I	CCNGG	2 cut(s)	271, 951
StyI	CCWWGG	2 cut(s)	285, 838
TaaI	ACNGT	3 cut(s)	65, 460, 482
TaiI	ACGT	2 cut(s)	548, 732
TaqI	TCGA	5 cut(s)	26, 73, 125, 629, 651
TasI	AATT	5 cut(s)	518, 589, 773, 803, 847
TauI	GCSGC	3 cut(s)	8, 122, 143
TfiI	GAWTC	4 cut(s)	308, 319, 358, 653
TscAI	CASTG	2 cut(s)	285, 487
TseI	GCWGC	2 cut(s)	58, 397
TspDTI	ATGAA	4 cut(s)	602, 629, 633, 816
TspGWI	ACGGA	3 cut(s)	27, 538, 686
TspRI	CASTG	2 cut(s)	285, 487
Tth111I	GACNNNGTC	1 cut(s)	544
VpaK11BI	GGWCC	2 cut(s)	603, 812
XagI	CCTNNNNNAGG	1 cut(s)	598
XapI	RAATTY	2 cut(s)	518, 589
XbaI	TCTAGA	1 cut(s)	101
XmnI	GAANNNNTTC	2 cut(s)	635, 729
XspI	CTAG	4 cut(s)	69, 102, 669, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.