Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Reverse (-)

43821731 .. 43825695

Gene Structure 3965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGTGATTCTCTACCAACTGGAGGTGTGGTTAGTGGTGGTGACGGGAATGGAGACCGGGTTGGAGACGACATTACTTGTCTTCCTTTCTCAGAGTTGGCTTTGGCTTACACCGAAGATGATGGTGGTGGCGGTAGCATGAACGACGGTGGTGGTAATGGTGATTCTGTTGGTGGCTGTCTTGGGTTAGCAACGGTGTTGCATGCTAGGGTTTTCCCTAGATGGGGCTATTGGGCTCCAAGTTGGACGTGGGCTTCGTTGGATGGGGTCGATATGGGCCCTAGGGTTTTGGGTTTTATATTGGCCGGAGCTCCGCGGAACTCCACACTCTCGATCCAGCTTCTCTCTCTCCTTGGAACTTCCAACCCGTCTCGGCGTGAGGCGTCTCTGCCTCTCCGGTCTTTCAAGCCCAACCCAGCCCCCACCGCCGAGCTCCTTGCCCAGCAACCTGCAACTAGCAAACCCATGGTTTCAACAATGAAGAAGTCGATCTTTGATGAACAAACTAACAAGGCCTTAAGGAAATTGCAAAAGAATGCTCAAAAGAAGAATAAGCATCATGATGTGGTTCGAGTTGAATGGGCAAATCATGTTATACAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

21.37

Weight (kDa)

7.81

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
AccII	CGCG	1 cut(s)	316
AciI	CCGC	4 cut(s)	132, 314, 316, 426
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	383
AfiI	CCNNNNNNNGG	3 cut(s)	23, 223, 224
AflII	CTTAAG	1 cut(s)	517
AgsI	TTSAA	3 cut(s)	406, 474, 578
AjiI	CACGTC	1 cut(s)	249
AluBI	AGCT	3 cut(s)	311, 340, 433
AluI	AGCT	3 cut(s)	311, 340, 433
Alw21I	GWGCWC	2 cut(s)	313, 435
Alw26I	GTCTC	4 cut(s)	48, 60, 375, 390
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	3 cut(s)	277, 303, 513
ApaI	GGGCCC	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspA2I	CCTAGG	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	277, 278
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	3 cut(s)	17, 53, 173
AvrII	CCTAGG	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	281
BanII	GRGCYC	4 cut(s)	238, 281, 313, 435
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	2 cut(s)	313, 435
BccI	CCATC	3 cut(s)	116, 216, 257
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	4 cut(s)	48, 60, 375, 390
BfaI	CTAG	4 cut(s)	207, 219, 282, 456
BfrI	CTTAAG	1 cut(s)	517
BfuAI	ACCTGC	1 cut(s)	457
BlnI	CCTAGG	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	277, 278
BmiI	GGNNCC	2 cut(s)	237, 279
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	281, 314, 352, 465
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 45, 75
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 223, 224
Bse1I	ACTGG	1 cut(s)	25
BseDI	CCNNGG	4 cut(s)	281, 314, 352, 465
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	3 cut(s)	23, 223, 224
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	281
BseYI	CCCAGC	2 cut(s)	415, 441
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	279, 305, 515
BsiHKAI	GWGCWC	2 cut(s)	313, 435
BsiSI	CCGG	3 cut(s)	58, 306, 397
BslI	CCNNNNNNNGG	3 cut(s)	23, 223, 224
BsmAI	GTCTC	4 cut(s)	48, 60, 375, 390
BsmBI	CGTCTC	3 cut(s)	60, 375, 390
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	3 cut(s)	279, 305, 515
Bso31I	GGTCTC	1 cut(s)	48
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	4 cut(s)	238, 281, 313, 435
Bsp143I	GATC	2 cut(s)	333, 489
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	4 cut(s)	132, 314, 316, 426
BspANI	GGCC	3 cut(s)	279, 305, 515
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	237, 279
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	1 cut(s)	328
BspTI	CTTAAG	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	4 cut(s)	281, 314, 352, 465
BssMI	GATC	2 cut(s)	333, 489
BssNI	GRCGYC	1 cut(s)	383
BssT1I	CCWWGG	3 cut(s)	281, 352, 465
Bst4CI	ACNGT	3 cut(s)	149, 196, 600
BstACI	GRCGYC	1 cut(s)	383
BstAFI	CTTAAG	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	2 cut(s)	314, 465
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	316
BstKTI	GATC	2 cut(s)	336, 492
BstMAI	GTCTC	4 cut(s)	48, 60, 375, 390
BstMBI	GATC	2 cut(s)	333, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	74
BsuRI	GGCC	3 cut(s)	279, 305, 515
BtgI	CCRYGG	2 cut(s)	314, 465
BtrI	CACGTC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	204
CciI	TCATGA	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	277, 278
Cfr42I	CCGCGG	1 cut(s)	317
CseI	GACGC	1 cut(s)	372
CviAII	CATG	5 cut(s)	139, 203, 466, 560, 590
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	2 cut(s)	335, 491
DpnII	GATC	2 cut(s)	333, 489
EaeI	YGGCCR	1 cut(s)	303
Ecl136II	GAGCTC	2 cut(s)	311, 433
Eco130I	CCWWGG	3 cut(s)	281, 352, 465
Eco147I	AGGCCT	1 cut(s)	515
Eco24I	GRGCYC	4 cut(s)	238, 281, 313, 435
Eco31I	GGTCTC	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	311, 433
EcoICRI	GAGCTC	2 cut(s)	311, 433
EcoO109I	RGGNCCY	1 cut(s)	278
EcoT14I	CCWWGG	3 cut(s)	281, 352, 465
EcoT38I	GRGCYC	4 cut(s)	238, 281, 313, 435
ErhI	CCWWGG	3 cut(s)	281, 352, 465
Esp3I	CGTCTC	3 cut(s)	60, 375, 390
FaeI	CATG	5 cut(s)	142, 206, 469, 563, 593
FaiI	YATR	8 cut(s)	140, 204, 275, 299, 467, 561, 591, 596
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	5 cut(s)	138, 202, 465, 559, 589
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	4 cut(s)	238, 281, 313, 435
FspBI	CTAG	4 cut(s)	207, 219, 282, 456
GsaI	CCCAGC	2 cut(s)	419, 445
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	279, 305, 515
HapII	CCGG	3 cut(s)	58, 306, 397
HgaI	GACGC	1 cut(s)	372
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	5 cut(s)	142, 206, 469, 563, 593
HinfI	GANTC	2 cut(s)	8, 164
HpaII	CCGG	3 cut(s)	58, 306, 397
HphI	GGTGA	3 cut(s)	17, 53, 173
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	331, 560
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	3 cut(s)	149, 196, 600
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	3 cut(s)	202, 452, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	5 cut(s)	142, 206, 469, 563, 593
KspI	CCGCGG	1 cut(s)	317
Kzo9I	GATC	2 cut(s)	333, 489
LmnI	GCTCC	4 cut(s)	241, 308, 316, 438
LpnPI	CCDG	8 cut(s)	6, 71, 319, 350, 410, 429, 455, 462
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	4 cut(s)	207, 219, 282, 456
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	335, 491
MboI	GATC	2 cut(s)	333, 489
MboII	GAAGA	4 cut(s)	74, 128, 493, 559
MhlI	GDGCHC	4 cut(s)	238, 281, 313, 435
MluCI	AATT	1 cut(s)	524
MmeI	TCCRAC	4 cut(s)	43, 224, 240, 387
MnlI	CCTC	3 cut(s)	17, 373, 402
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	316
MspCI	CTTAAG	1 cut(s)	517
MspI	CCGG	3 cut(s)	58, 306, 397
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	541
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	425
NciI	CCSGG	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	2 cut(s)	333, 489
NlaIII	CATG	5 cut(s)	142, 206, 469, 563, 593
NlaIV	GGNNCC	2 cut(s)	237, 279
NmeAIII	GCCGAG	2 cut(s)	352, 454
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	2 cut(s)	8, 164
Psp124BI	GAGCTC	2 cut(s)	313, 435
PspFI	CCCAGC	2 cut(s)	415, 441
PspN4I	GGNNCC	2 cut(s)	237, 279
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	277, 278
RseI	CAYNNNNRTG	1 cut(s)	561
SacI	GAGCTC	2 cut(s)	313, 435
SacII	CCGCGG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	518
Sau3AI	GATC	2 cut(s)	333, 489
Sau96I	GGNCC	2 cut(s)	277, 278
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	4 cut(s)	238, 281, 313, 435
SetI	ASST	6 cut(s)	28, 251, 313, 342, 435, 451
SfaNI	GCATC	1 cut(s)	565
Sfr303I	CCGCGG	1 cut(s)	317
SgrBI	CCGCGG	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	524
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	4 cut(s)	132, 314, 316, 426
SspMI	CTAG	4 cut(s)	207, 219, 282, 456
SstI	GAGCTC	2 cut(s)	313, 435
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	3 cut(s)	281, 352, 465
TaaI	ACNGT	3 cut(s)	149, 196, 600
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	4 cut(s)	270, 332, 488, 571
TasI	AATT	1 cut(s)	524
TfiI	GAWTC	2 cut(s)	8, 164
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	155, 494, 513
Vha464I	CTTAAG	1 cut(s)	517
XceI	RCATGY	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XmaJI	CCTAGG	1 cut(s)	281
XspI	CTAG	4 cut(s)	207, 219, 282, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.