Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000248.1

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Forward (+)

10621 .. 13946

Gene Structure 3326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000248.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

atggcggcagacggaggggcgctttcgatgttttcggttgtggaggatgtgcttcagcagcacggtactagtcgaatcggagatcttgatttggtggagtctagaaaagctgagcaagccgcatcgagaagaaatgaggcggccgggtggcttagaaaggtgattggtgtcgtcgtggctaaagatttgccggcagagccttctgaggaagagttcaggcttggattgagaagtgggattatcctctgcaatgctatcaataaggttcaacccggagcagtgcccaaggtggtggaaagtccatctgattcagctttgatccctgatggagcattgtcggcgttccaatactttgagaatctgaggaacttccttgttgctattgaggggatggggctgcctacatttgaggcatctgatcttgaacaaggaggcaaatctgcaagggttgtaaatacagttctggcgctcaaatcctacagtgagtggaaacatacgggaggaaatgggacatggaaattcggtggaaatgtaaaaccgaccacgtccatcaagtcttttgtgagaaaaaattcggagccatttatgaattccttgtcaaggacctcatcaatgaatgaaaaatcttcaaactctttcacctctgatctcgattctaatcaaatgactagttcccgctccttgagtatgcttgtccgtgcagttctgttagataagaagcctgaagacgttccaatggaatcaaaaagccggctgcttaaacagcaaatgatttttgatcaacaacaaagagatgttcgggaactaaagcaaacccttcacacaacaaaatctggtattcagtttatgaaaatgaagtttcatgaggagttccagaatattggtttgcacattcatggcctagctcatgctgcgagtggatatcacaaagttcttgaagaaaaccgaaagctctacaatcaagtccaagacctcaaaggaagtatcagggtttattgtcgagtgagacccttcttatctggacggtcaaattgtttgagctgtgtggatcatatggaagatggaaatatcactattaacaccccctcaaggcatgggaaaggacaaagaaccttcagcttcaataaagtctttgggccgtctgcaacccaagcggacgtcttttctgacatgcaaccactgattcgttccgtccttgatggttacaatgtctgcatatttgcatatggtcaaacaggatcagggaaaactttcaccatgactggacccagagagcttacagagaaaagccaaggtgtaaattatagggctttgggagacttgtttctcatagcagatcaaagaaaggacactttccactatgatgtttctgttcagatgattgagatctacaacgagcaagtccgggatctccttgttactgatggagctaacaaaagatatcctttactagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

485

Amino Acids

53.92

Weight (kDa)

8.76

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1161
AccBSI	CCGCTC	1 cut(s)	678
AciI	CCGC	5 cut(s)	5, 120, 140, 676, 1154
AclWI	GGATC	4 cut(s)	313, 1056, 1246, 1416
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	3 cut(s)	518, 571, 589
AcuI	CTGAAG	3 cut(s)	38, 744, 1099
AcyI	GRCGYC	1 cut(s)	1158
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	600, 1089
AgsI	TTSAA	5 cut(s)	269, 425, 630, 938, 1123
AhlI	ACTAGT	3 cut(s)	68, 668, 1450
AjiI	CACGTC	1 cut(s)	546
AluBI	AGCT	8 cut(s)	110, 314, 905, 952, 1041, 1119, 1276, 1430
AluI	AGCT	8 cut(s)	110, 314, 905, 952, 1041, 1119, 1276, 1430
Alw26I	GTCTC	2 cut(s)	1000, 1311
AlwI	GGATC	4 cut(s)	313, 1056, 1246, 1416
AoxI	GGCC	3 cut(s)	141, 898, 1136
ApeKI	GCWGC	4 cut(s)	58, 397, 754, 911
ApoI	RAATTY	3 cut(s)	518, 571, 589
Asp700I	GAANNNNTTC	3 cut(s)	571, 729, 1250
AspLEI	GCGC	2 cut(s)	22, 469
AspS9I	GGNCC	3 cut(s)	603, 1136, 1265
AsuC2I	CCSGG	3 cut(s)	145, 273, 1406
AsuHPI	GGTGA	3 cut(s)	172, 631, 1246
AvaII	GGWCC	2 cut(s)	603, 1265
BaeGI	GKGCMC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	732
BbvI	GCAGC	4 cut(s)	70, 384, 741, 898
BccI	CCATC	7 cut(s)	310, 320, 385, 557, 1055, 1193, 1418
BceAI	ACGGC	1 cut(s)	1123
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	3 cut(s)	145, 273, 1406
BcoDI	GTCTC	2 cut(s)	1000, 1311
BcuI	ACTAGT	3 cut(s)	68, 668, 1450
BfaI	CTAG	5 cut(s)	69, 102, 669, 902, 1451
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	2 cut(s)	23, 470
BglII	AGATCT	2 cut(s)	82, 1386
BisI	GCNGC	7 cut(s)	6, 59, 120, 141, 398, 755, 912
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	7 cut(s)	7, 60, 121, 142, 399, 756, 913
Bme1390I	CCNGG	3 cut(s)	145, 273, 1406
Bme18I	GGWCC	2 cut(s)	603, 1265
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	3 cut(s)	603, 1136, 1265
BmiI	GGNNCC	2 cut(s)	579, 1267
BmrFI	CCNGG	3 cut(s)	145, 273, 1406
BmsI	GCATC	2 cut(s)	131, 422
BpiI	GAAGAC	1 cut(s)	732
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	703, 1072
BpuMI	CCSGG	3 cut(s)	145, 273, 1406
BsaBI	GATNNNNATC	2 cut(s)	657, 1385
BsaHI	GRCGYC	1 cut(s)	1158
BsaI	GGTCTC	1 cut(s)	1000
BsaJI	CCNNGG	2 cut(s)	285, 1291
Bsc4I	CCNNNNNNNGG	2 cut(s)	600, 1089
Bse118I	RCCGGY	2 cut(s)	190, 750
Bse1I	ACTGG	1 cut(s)	1267
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	2 cut(s)	657, 1385
BseDI	CCNNGG	2 cut(s)	285, 1291
BseGI	GGATG	2 cut(s)	52, 396
BseJI	GATNNNNATC	2 cut(s)	657, 1385
BseLI	CCNNNNNNNGG	2 cut(s)	600, 1089
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	3 cut(s)	102, 195, 353
BseNI	ACTGG	1 cut(s)	1267
BseRI	GAGGAG	1 cut(s)	881
BseSI	GKGCMC	1 cut(s)	285
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	4 cut(s)	70, 384, 741, 898
BsgI	GTGCAG	1 cut(s)	720
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	143, 900, 1138
BsiEI	CGRYCG	1 cut(s)	144
BsiSI	CCGG	5 cut(s)	144, 191, 273, 751, 1405
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	2 cut(s)	600, 1089
BsmAI	GTCTC	2 cut(s)	1000, 1311
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	3 cut(s)	143, 900, 1138
Bso31I	GGTCTC	1 cut(s)	1000
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	5 cut(s)	5, 120, 140, 676, 1154
BspANI	GGCC	3 cut(s)	143, 900, 1138
BspCNI	CTCAG	3 cut(s)	103, 196, 354
BspHI	TCATGA	1 cut(s)	862
BspLI	GGNNCC	2 cut(s)	579, 1267
BspPI	GGATC	4 cut(s)	313, 1056, 1246, 1416
BspTNI	GGTCTC	1 cut(s)	1000
BsrBI	CCGCTC	1 cut(s)	678
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	2 cut(s)	190, 750
BsrI	ACTGG	1 cut(s)	1267
BssAI	RCCGGY	2 cut(s)	190, 750
BssECI	CCNNGG	2 cut(s)	285, 1291
BssNI	GRCGYC	1 cut(s)	1158
BssT1I	CCWWGG	2 cut(s)	285, 1291
Bst4CI	ACNGT	4 cut(s)	65, 460, 482, 1026
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	1158
BstC8I	GCNNGC	3 cut(s)	117, 192, 752
BstDEI	CTNAG	4 cut(s)	111, 152, 204, 362
BstENI	CCTNNNNNAGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	52, 396
BstH2I	RGCGCY	2 cut(s)	23, 470
BstHHI	GCGC	2 cut(s)	22, 469
BstMAI	GTCTC	2 cut(s)	1000, 1311
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 116, 196, 338, 763, 911, 1151
BstNSI	RCATGY	1 cut(s)	1174
BstSCI	CCNGG	3 cut(s)	143, 271, 1404
BstSFI	CTRYAG	1 cut(s)	478
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	4 cut(s)	70, 384, 741, 898
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	3 cut(s)	82, 1386, 1408
BstXI	CCANNNNNNTGG	2 cut(s)	292, 881
BstYI	RGATCY	3 cut(s)	82, 1386, 1408
BstZI	CGGCCG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	143, 900, 1138
BtrI	CACGTC	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	52, 396
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	285, 487, 1178
Cac8I	GCNNGC	3 cut(s)	117, 192, 752
CciI	TCATGA	1 cut(s)	862
CfoI	GCGC	2 cut(s)	22, 469
Cfr10I	RCCGGY	2 cut(s)	190, 750
Cfr13I	GGNCC	3 cut(s)	603, 1136, 1265
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	7 cut(s)	513, 863, 896, 908, 1094, 1171, 1258
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	4 cut(s)	111, 152, 204, 362
EaeI	YGGCCR	1 cut(s)	141
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EclXI	CGGCCG	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	285, 1291
Eco31I	GGTCTC	1 cut(s)	1000
Eco32I	GATATC	2 cut(s)	923, 1442
Eco47I	GGWCC	2 cut(s)	603, 1265
Eco52I	CGGCCG	1 cut(s)	141
Eco57I	CTGAAG	3 cut(s)	38, 744, 1099
EcoNI	CCTNNNNNAGG	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	589
EcoRV	GATATC	2 cut(s)	923, 1442
EcoT14I	CCWWGG	2 cut(s)	285, 1291
ErhI	CCWWGG	2 cut(s)	285, 1291
FaeI	CATG	7 cut(s)	516, 866, 899, 911, 1097, 1174, 1261
FalI	AAGNNNNNCTT	1 cut(s)	1429
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	7 cut(s)	512, 862, 895, 907, 1093, 1170, 1257
FauI	CCCGC	1 cut(s)	683
FauNDI	CATATG	2 cut(s)	1053, 1225
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	7 cut(s)	6, 59, 120, 141, 398, 755, 912
FokI	GGATG	2 cut(s)	59, 403
Fsp4HI	GCNGC	7 cut(s)	6, 59, 120, 141, 398, 755, 912
FspBI	CTAG	5 cut(s)	69, 102, 669, 902, 1451
GlaI	GCGC	2 cut(s)	21, 468
GluI	GCNGC	7 cut(s)	6, 59, 120, 141, 398, 755, 912
HaeII	RGCGCY	2 cut(s)	23, 470
HaeIII	GGCC	3 cut(s)	143, 900, 1138
HapII	CCGG	5 cut(s)	144, 191, 273, 751, 1405
HhaI	GCGC	2 cut(s)	22, 469
Hin1I	GRCGYC	1 cut(s)	1158
Hin1II	CATG	7 cut(s)	516, 866, 899, 911, 1097, 1174, 1261
Hin6I	GCGC	2 cut(s)	20, 467
HinP1I	GCGC	2 cut(s)	20, 467
HinfI	GANTC	7 cut(s)	75, 98, 308, 358, 653, 740, 1183
HpaII	CCGG	5 cut(s)	144, 191, 273, 751, 1405
HphI	GGTGA	3 cut(s)	172, 631, 1246
Hpy188I	TCNGA	9 cut(s)	80, 205, 307, 363, 418, 577, 646, 1168, 1377
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	4 cut(s)	210, 827, 1021, 1123
HpyCH4III	ACNGT	4 cut(s)	65, 460, 482, 1026
HpyCH4IV	ACGT	3 cut(s)	545, 729, 1158
HpyCH4V	TGCA	8 cut(s)	249, 443, 701, 889, 1145, 1174, 1215, 1223
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 116, 196, 338, 763, 911, 1151
HpyF3I	CTNAG	4 cut(s)	111, 152, 204, 362
HpySE526I	ACGT	3 cut(s)	545, 729, 1158
Hsp92I	GRCGYC	1 cut(s)	1158
Hsp92II	CATG	7 cut(s)	516, 866, 899, 911, 1097, 1174, 1261
HspAI	GCGC	2 cut(s)	20, 467
KroI	GCCGGC	2 cut(s)	190, 750
KroNI	GCCGGC	2 cut(s)	192, 752
Ksp22I	TGATCA	1 cut(s)	778
LmnI	GCTCC	5 cut(s)	275, 329, 577, 683, 1427
Lsp1109I	GCAGC	4 cut(s)	70, 384, 741, 898
LweI	GCATC	2 cut(s)	131, 422
MaeI	CTAG	5 cut(s)	69, 102, 669, 902, 1451
MaeII	ACGT	3 cut(s)	545, 729, 1158
MaeIII	GTNAC	2 cut(s)	1202, 1417
MbiI	CCGCTC	1 cut(s)	678
MboII	GAAGA	6 cut(s)	141, 221, 618, 737, 950, 1070
MflI	RGATCY	3 cut(s)	82, 1386, 1408
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	5 cut(s)	518, 571, 589, 1030, 1300
MlyI	GAGTC	1 cut(s)	107
MroNI	GCCGGC	2 cut(s)	190, 750
MroXI	GAANNNNTTC	3 cut(s)	571, 729, 1250
MseI	TTAA	2 cut(s)	759, 1077
MslI	CAYNNNNRTG	2 cut(s)	894, 1362
MspI	CCGG	5 cut(s)	144, 191, 273, 751, 1405
MspR9I	CCNGG	3 cut(s)	145, 273, 1406
MwoI	GCNNNNNNNGC	7 cut(s)	58, 116, 196, 338, 763, 911, 1151
NaeI	GCCGGC	2 cut(s)	192, 752
NciI	CCSGG	3 cut(s)	145, 273, 1406
NdeI	CATATG	2 cut(s)	1053, 1225
NgoMIV	GCCGGC	2 cut(s)	190, 750
NlaIII	CATG	7 cut(s)	516, 866, 899, 911, 1097, 1174, 1261
NlaIV	GGNNCC	2 cut(s)	579, 1267
NspI	RCATGY	1 cut(s)	1174
PagI	TCATGA	1 cut(s)	862
PdiI	GCCGGC	2 cut(s)	192, 752
PdmI	GAANNNNTTC	3 cut(s)	571, 729, 1250
PfeI	GAWTC	6 cut(s)	75, 308, 358, 653, 740, 1183
PflFI	GACNNNGTC	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	1404
PkrI	GCNGC	7 cut(s)	7, 60, 121, 142, 399, 756, 913
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	603
PspN4I	GGNNCC	2 cut(s)	579, 1267
PspPI	GGNCC	3 cut(s)	603, 1136, 1265
PspPPI	RGGWCCY	1 cut(s)	603
PsrI	GAACNNNNNNTAC	2 cut(s)	444, 476
PsuI	RGATCY	3 cut(s)	82, 1386, 1408
PsyI	GACNNNGTC	1 cut(s)	544
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	894, 1362
SaqAI	TTAA	2 cut(s)	759, 1077
SatI	GCNGC	7 cut(s)	6, 59, 120, 141, 398, 755, 912
Sau96I	GGNCC	3 cut(s)	603, 1136, 1265
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	145, 273, 1406
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	131, 422
SfcI	CTRYAG	1 cut(s)	478
SinI	GGWCC	2 cut(s)	603, 1265
SmiMI	CAYNNNNRTG	2 cut(s)	894, 1362
SmlI	CTYRAG	2 cut(s)	682, 1087
SmoI	CTYRAG	2 cut(s)	682, 1087
SpeI	ACTAGT	3 cut(s)	68, 668, 1450
Sse9I	AATT	5 cut(s)	518, 571, 589, 1030, 1300
SsiI	CCGC	5 cut(s)	5, 120, 140, 676, 1154
SspI	AATATT	1 cut(s)	880
SspMI	CTAG	5 cut(s)	69, 102, 669, 902, 1451
StyD4I	CCNGG	3 cut(s)	143, 271, 1404
StyI	CCWWGG	2 cut(s)	285, 1291
TaaI	ACNGT	4 cut(s)	65, 460, 482, 1026
TaiI	ACGT	3 cut(s)	548, 732, 1161
TaqI	TCGA	5 cut(s)	26, 73, 125, 651, 1000
TasI	AATT	5 cut(s)	518, 571, 589, 1030, 1300
TauI	GCSGC	3 cut(s)	8, 122, 143
TfiI	GAWTC	6 cut(s)	75, 308, 358, 653, 740, 1183
Tru1I	TTAA	2 cut(s)	759, 1077
Tru9I	TTAA	2 cut(s)	759, 1077
TscAI	CASTG	3 cut(s)	285, 487, 1185
TseI	GCWGC	4 cut(s)	58, 397, 754, 911
TspDTI	ATGAA	7 cut(s)	602, 629, 633, 851, 863, 869, 884
TspGWI	ACGGA	3 cut(s)	27, 686, 1180
TspRI	CASTG	3 cut(s)	285, 487, 1185
Tth111I	GACNNNGTC	1 cut(s)	544
VpaK11BI	GGWCC	2 cut(s)	603, 1265
XagI	CCTNNNNNAGG	1 cut(s)	598
XapI	RAATTY	3 cut(s)	518, 571, 589
XbaI	TCTAGA	1 cut(s)	101
XceI	RCATGY	1 cut(s)	1174
XmnI	GAANNNNTTC	3 cut(s)	571, 729, 1250
XspI	CTAG	5 cut(s)	69, 102, 669, 902, 1451
ZraI	GACGTC	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.