Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Forward (+)

41752146 .. 41757049

Gene Structure 4904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCTTTTCATATTAGATTTTGATTATTCAGTGGCTAATTTCAAGTTGATTACTTCAGCCTCCGATATAGCAGACCCACTCGTGCAAAGATTGAAGCACGAGAGAAGACTGCGATTCCCACAGCATTTTAAGATGCTGCATATCGCAGCGGTCTGGAAATTAGTACACATGTCACTAGGAAAGATGTTGAGGAAGGTCTTTCTAAGGTCATACAGGGTCATTGAGGATGATAAGCGTTTTCACATACAGGTCTACCTCGACTTTGGCTTGGCTATACCCAAGCTCAGTGTCCAAGGGATGGTATCTTCACTAAAAGAACTTTTGGAGCTTGCTCCAATTAAGAAGGATCCCGAGCTTAATGCATCCATAGACGAGCCCAATATAGAATGCAGAAGTTGGAGCCACGCCCAAACCCAAAAGAAAATGCTCGGGCACCCGGACCCACAATGTGGTCTCTTCCACTGCGACAAGCCACGAAAGTGCCCAACAAAGATCACAGCGCCCCGCGCCACCTTGCTCGTAACTACACCATTGCACAACGCCGACGATGTTGGTAACACCGTAACCCCAAGACCGCGAGCAAGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

196

Amino Acids

22.43

Weight (kDa)

9.54

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AccB7I	CCANNNNNTGG	2 cut(s)	298, 449
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	507, 577
AciI	CCGC	3 cut(s)	149, 505, 575
AclWI	GGATC	2 cut(s)	341, 354
AcuI	CTGAAG	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	298, 449
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	43, 94
AleI	CACNNNNGTG	1 cut(s)	478
AluBI	AGCT	4 cut(s)	283, 328, 355, 585
AluI	AGCT	4 cut(s)	283, 328, 355, 585
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	2 cut(s)	341, 354
Ama87I	CYCGRG	2 cut(s)	350, 428
ApeKI	GCWGC	2 cut(s)	136, 146
AspLEI	GCGC	2 cut(s)	502, 509
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	437
AvaI	CYCGRG	2 cut(s)	350, 428
AvaII	GGWCC	1 cut(s)	439
BaeGI	GKGCMC	2 cut(s)	435, 485
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	378
BauI	CACGAG	2 cut(s)	80, 98
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	123, 158
BccI	CCATC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	503
BisI	GCNGC	2 cut(s)	137, 147
BlsI	GCNGC	2 cut(s)	138, 148
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	439
BmeT110I	CYCGRG	2 cut(s)	350, 428
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	4 cut(s)	348, 401, 434, 441
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	2 cut(s)	123, 371
BpiI	GAAGAC	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 449
Bse3DI	GCAATG	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	3 cut(s)	232, 303, 362
BseLI	CCNNNNNNNGG	2 cut(s)	298, 449
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	298
BseSI	GKGCMC	2 cut(s)	435, 485
BseXI	GCAGC	2 cut(s)	123, 158
Bsh1236I	CGCG	2 cut(s)	507, 577
BshNI	GGYRCC	1 cut(s)	432
BsiHKCI	CYCGRG	2 cut(s)	350, 428
BsiSI	CCGG	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	298, 449
BsmAI	GTCTC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	2 cut(s)	350, 428
Bsp1286I	GDGCHC	3 cut(s)	378, 435, 485
Bsp143I	GATC	2 cut(s)	346, 492
BspACI	CCGC	3 cut(s)	149, 505, 575
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	2 cut(s)	507, 577
BspLI	GGNNCC	4 cut(s)	348, 401, 434, 441
BspPI	GGATC	2 cut(s)	341, 354
BspT107I	GGYRCC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	346, 492
BssSI	CACGAG	2 cut(s)	80, 98
BssT1I	CCWWGG	1 cut(s)	292
Bst2BI	CACGAG	2 cut(s)	80, 98
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	1 cut(s)	461
BstC8I	GCNNGC	3 cut(s)	330, 579, 583
BstDEI	CTNAG	2 cut(s)	203, 284
BstF5I	GGATG	3 cut(s)	232, 303, 362
BstFNI	CGCG	2 cut(s)	507, 577
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	2 cut(s)	502, 509
BstKTI	GATC	2 cut(s)	349, 495
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	2 cut(s)	346, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	435
BstSLI	GKGCMC	2 cut(s)	435, 485
BstUI	CGCG	2 cut(s)	507, 577
BstV1I	GCAGC	2 cut(s)	123, 158
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	232, 303, 362
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	3 cut(s)	36, 292, 460
Cac8I	GCNNGC	3 cut(s)	330, 579, 583
CfoI	GCGC	2 cut(s)	502, 509
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	203, 284
DpnI	GATC	2 cut(s)	348, 494
DpnII	GATC	2 cut(s)	346, 492
DraIII	CACNNNGTG	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	350, 428
EcoT14I	CCWWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	172
FaiI	YATR	9 cut(s)	11, 68, 141, 170, 211, 245, 275, 368, 383
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	512
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	137, 147
FokI	GGATG	3 cut(s)	239, 310, 349
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	137, 147
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	2 cut(s)	501, 508
GluI	GCNGC	2 cut(s)	137, 147
HaeII	RGCGCY	1 cut(s)	503
HapII	CCGG	1 cut(s)	437
HhaI	GCGC	2 cut(s)	502, 509
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	2 cut(s)	500, 507
HinP1I	GCGC	2 cut(s)	500, 507
HindIII	AAGCTT	1 cut(s)	583
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	166, 253
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	154, 350
Hpy8I	GTNNAC	2 cut(s)	166, 253
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	2 cut(s)	187, 337
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4V	TGCA	5 cut(s)	85, 139, 362, 390, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	2 cut(s)	203, 284
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	2 cut(s)	500, 507
Kzo9I	GATC	2 cut(s)	346, 492
LmnI	GCTCC	3 cut(s)	325, 337, 399
LpnPI	CCDG	4 cut(s)	139, 199, 233, 450
Lsp1109I	GCAGC	2 cut(s)	123, 158
LweI	GCATC	2 cut(s)	123, 371
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	4 cut(s)	171, 520, 554, 562
MalI	GATC	2 cut(s)	348, 494
MboI	GATC	2 cut(s)	346, 492
MboII	GAAGA	3 cut(s)	117, 297, 448
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	3 cut(s)	378, 435, 485
MluCI	AATT	3 cut(s)	37, 158, 336
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	4 cut(s)	70, 183, 217, 266
Mph1103I	ATGCAT	1 cut(s)	364
MseI	TTAA	3 cut(s)	129, 339, 357
MslI	CAYNNNNRTG	1 cut(s)	478
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	392
MvnI	CGCG	2 cut(s)	507, 577
MwoI	GCNNNNNNNGC	1 cut(s)	506
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	2 cut(s)	346, 492
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	4 cut(s)	348, 401, 434, 441
NmuCI	GTSAC	1 cut(s)	171
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	478
PciI	ACATGT	1 cut(s)	168
PctI	GAATGC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	114
PflMI	CCANNNNNTGG	2 cut(s)	298, 449
PkrI	GCNGC	2 cut(s)	138, 148
PscI	ACATGT	1 cut(s)	168
PspN4I	GGNNCC	4 cut(s)	348, 401, 434, 441
PspPI	GGNCC	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	478
SaqAI	TTAA	3 cut(s)	129, 339, 357
SatI	GCNGC	2 cut(s)	137, 147
Sau3AI	GATC	2 cut(s)	346, 492
Sau96I	GGNCC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	437
SduI	GDGCHC	3 cut(s)	378, 435, 485
SetI	ASST	9 cut(s)	198, 209, 252, 258, 285, 330, 357, 515, 587
SfaNI	GCATC	2 cut(s)	123, 371
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	478
Sse9I	AATT	3 cut(s)	37, 158, 336
SsiI	CCGC	3 cut(s)	149, 505, 575
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	562
TaqI	TCGA	1 cut(s)	258
TasI	AATT	3 cut(s)	37, 158, 336
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	3 cut(s)	129, 339, 357
Tru9I	TTAA	3 cut(s)	129, 339, 357
TscAI	CASTG	3 cut(s)	36, 292, 467
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	2 cut(s)	136, 146
Tsp45I	GTSAC	1 cut(s)	171
TspRI	CASTG	3 cut(s)	36, 292, 467
Van91I	CCANNNNNTGG	2 cut(s)	298, 449
VpaK11BI	GGWCC	1 cut(s)	439
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.