Rh7DG248300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004268
Physical Location & Seq
Forward (+)
25692491 .. 25696092
3602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG248300.1

Sequence Viewer

Length: 612 bp
ATGGGAACGAGTCTCCGCTGTCGTCGCTATCGATTTGTGGGAGAAGCAATGGAATCCGTCAACGGCGACAGTGATCTGTGGGAGACCGGAGTCGGTGGAGGGAGACAACAACGAAATCGAAAGGGTTTTGGAGGCATGATTGCTCGATCAGGGGCCTCTACCCTCGATGGTAGCCTTCCTCTCAGTTTGCCTGATAGCCTTTTCCTCTTGACTTCTCTTGGTGCTTGTATAATTATGGCTCCTTCTTTTGCAGTTGATGGGGTGATTCGATTGAAAGTTTTTGGTGGTGATGGGGTTCTGTGGCTATTACAATACTTGGCCTTGGGAGGTGGTTCTCGGATCTGGTCTGGTTTAGATCAGGTTGAAATCTCACTGAGGAGGACTCACCATGAGTTGGCTTTGGCTTACACCAAAGATGATGGTGGTGGCGGTAGCATGAACAACGGTGGTGGTACTAATTATGGTGGCCACAATGGTGATTCTGTTGGTGGCTGTCTTGCGTTAGCAACGGTGTTGCATGCTAGGGTTTCCCCTAGATGGGGCTATTGGGCTCCAAGTTGGAAGTGGGCTTCGTTGGATGGGGTCGATATGGGCCCTAGGTTTGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.5

Weight (kDa)

8.41

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 394
AciI CCGC 2 cut(s) 16, 429
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 466
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 5 cut(s) 394, 537, 538, 539, 602
AgsI TTSAA 2 cut(s) 274, 365
AleI CACNNNNGTG 1 cut(s) 474
Alw26I GTCTC 3 cut(s) 17, 77, 97
AlwI GGATC 1 cut(s) 347
AoxI GGCC 4 cut(s) 153, 318, 466, 592
ApaI GGGCCC 1 cut(s) 596
AspA2I CCTAGG 1 cut(s) 596
AspS9I GGNCC 3 cut(s) 153, 592, 593
AsuHPI GGTGA 4 cut(s) 274, 299, 377, 488
AvrII CCTAGG 1 cut(s) 596
BaeGI GKGCMC 1 cut(s) 596
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 2 cut(s) 553, 596
BccI CCATC 6 cut(s) 161, 251, 284, 413, 531, 572
BceAI ACGGC 1 cut(s) 79
BcoDI GTCTC 3 cut(s) 17, 77, 97
BfaI CTAG 3 cut(s) 522, 534, 597
BlnI CCTAGG 1 cut(s) 596
BmgT120I GGNCC 3 cut(s) 153, 592, 593
BmiI GGNNCC 4 cut(s) 154, 240, 552, 594
BoxI GACNNNNGTC 1 cut(s) 89
BplI GAGNNNNNCTC 2 cut(s) 367, 399
Bsa29I ATCGAT 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 321, 596
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 5 cut(s) 394, 537, 538, 539, 602
Bse3DI GCAATG 1 cut(s) 54
BseCI ATCGAT 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 321, 596
BseGI GGATG 1 cut(s) 583
BseLI CCNNNNNNNGG 5 cut(s) 394, 537, 538, 539, 602
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 196, 365
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 596
BshFI GGCC 4 cut(s) 155, 320, 468, 594
BshVI ATCGAT 1 cut(s) 31
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 5 cut(s) 394, 537, 538, 539, 602
BsmAI GTCTC 3 cut(s) 17, 77, 97
BsnI GGCC 4 cut(s) 155, 320, 468, 594
Bso31I GGTCTC 1 cut(s) 77
Bsp120I GGGCCC 1 cut(s) 592
Bsp1286I GDGCHC 2 cut(s) 553, 596
Bsp143I GATC 4 cut(s) 73, 146, 339, 355
BspACI CCGC 2 cut(s) 16, 429
BspANI GGCC 4 cut(s) 155, 320, 468, 594
BspCNI CTCAG 2 cut(s) 195, 366
BspDI ATCGAT 1 cut(s) 31
BspLI GGNNCC 4 cut(s) 154, 240, 552, 594
BspPI GGATC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 321, 596
BssMI GATC 4 cut(s) 73, 146, 339, 355
BssT1I CCWWGG 2 cut(s) 321, 596
Bst4CI ACNGT 3 cut(s) 71, 446, 511
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 2 cut(s) 182, 374
BstF5I GGATG 1 cut(s) 583
BstKTI GATC 4 cut(s) 76, 149, 342, 358
BstMAI GTCTC 3 cut(s) 17, 77, 97
BstMBI GATC 4 cut(s) 73, 146, 339, 355
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 521
BstPAI GACNNNNGTC 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 596
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
Bsu15I ATCGAT 1 cut(s) 31
BsuRI GGCC 4 cut(s) 155, 320, 468, 594
BsuTUI ATCGAT 1 cut(s) 31
BtsCI GGATG 1 cut(s) 583
BtsIMutI CAGTG 2 cut(s) 76, 371
Cac8I GCNNGC 1 cut(s) 519
Cfr13I GGNCC 3 cut(s) 153, 592, 593
ClaI ATCGAT 1 cut(s) 31
Csp6I GTAC 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 430, 465
CviAII CATG 4 cut(s) 136, 389, 436, 518
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 2 cut(s) 182, 374
DpnI GATC 4 cut(s) 75, 148, 341, 357
DpnII GATC 4 cut(s) 73, 146, 339, 355
EaeI YGGCCR 1 cut(s) 466
Eco130I CCWWGG 2 cut(s) 321, 596
Eco24I GRGCYC 2 cut(s) 553, 596
Eco31I GGTCTC 1 cut(s) 77
EcoO109I RGGNCCY 2 cut(s) 153, 593
EcoT14I CCWWGG 2 cut(s) 321, 596
EcoT38I GRGCYC 2 cut(s) 553, 596
ErhI CCWWGG 2 cut(s) 321, 596
FaeI CATG 4 cut(s) 139, 392, 439, 521
FaiI YATR 8 cut(s) 137, 230, 236, 390, 437, 462, 519, 590
FatI CATG 4 cut(s) 135, 388, 435, 517
FokI GGATG 1 cut(s) 590
FriOI GRGCYC 2 cut(s) 553, 596
FspBI CTAG 3 cut(s) 522, 534, 597
HaeIII GGCC 4 cut(s) 155, 320, 468, 594
HapII CCGG 1 cut(s) 87
Hin1II CATG 4 cut(s) 139, 392, 439, 521
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 6 cut(s) 10, 53, 90, 265, 382, 479
HpaII CCGG 1 cut(s) 87
HphI GGTGA 4 cut(s) 274, 299, 377, 488
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 185, 252
HpyCH4III ACNGT 3 cut(s) 71, 446, 511
HpyCH4V TGCA 2 cut(s) 251, 517
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 2 cut(s) 182, 374
Hsp92II CATG 4 cut(s) 139, 392, 439, 521
Kzo9I GATC 4 cut(s) 73, 146, 339, 355
LmnI GCTCC 2 cut(s) 244, 556
LpnPI CCDG 6 cut(s) 100, 135, 204, 328, 333, 344
MaeI CTAG 3 cut(s) 522, 534, 597
MalI GATC 4 cut(s) 75, 148, 341, 357
MboI GATC 4 cut(s) 73, 146, 339, 355
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 553, 596
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 2 cut(s) 231, 457
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 3 cut(s) 19, 99, 376
MmeI TCCRAC 2 cut(s) 539, 555
MnlI CCTC 9 cut(s) 92, 125, 166, 173, 189, 215, 320, 369, 372
Mox20I TGGCCA 1 cut(s) 468
MscI TGGCCA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 4 cut(s) 73, 146, 339, 355
NlaIII CATG 4 cut(s) 139, 392, 439, 521
NlaIV GGNNCC 4 cut(s) 154, 240, 552, 594
NspI RCATGY 1 cut(s) 521
OliI CACNNNNGTG 1 cut(s) 474
PaeI GCATGC 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 28
PfeI GAWTC 3 cut(s) 53, 265, 479
PflMI CCANNNNNTGG 1 cut(s) 394
PleI GAGTC 3 cut(s) 18, 98, 376
PpsI GAGTC 3 cut(s) 18, 98, 376
PshAI GACNNNNGTC 1 cut(s) 89
PspN4I GGNNCC 4 cut(s) 154, 240, 552, 594
PspOMI GGGCCC 1 cut(s) 592
PspPI GGNCC 3 cut(s) 153, 592, 593
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 1 cut(s) 474
Sau3AI GATC 4 cut(s) 73, 146, 339, 355
Sau96I GGNCC 3 cut(s) 153, 592, 593
SchI GAGTC 3 cut(s) 19, 99, 376
SduI GDGCHC 2 cut(s) 553, 596
SetI ASST 3 cut(s) 331, 363, 602
SmiMI CAYNNNNRTG 1 cut(s) 474
SphI GCATGC 1 cut(s) 521
Sse9I AATT 2 cut(s) 231, 457
SsiI CCGC 2 cut(s) 16, 429
SspMI CTAG 3 cut(s) 522, 534, 597
StyI CCWWGG 2 cut(s) 321, 596
TaaI ACNGT 3 cut(s) 71, 446, 511
TaqI TCGA 6 cut(s) 31, 118, 145, 165, 268, 585
TasI AATT 2 cut(s) 231, 457
TfiI GAWTC 3 cut(s) 53, 265, 479
TscAI CASTG 2 cut(s) 76, 378
TspDTI ATGAA 1 cut(s) 452
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 2 cut(s) 76, 378
Van91I CCANNNNNTGG 1 cut(s) 394
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 561
XmaJI CCTAGG 1 cut(s) 596
XspI CTAG 3 cut(s) 522, 534, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.