RchiOBHm_Chr6g0294561
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
56806060 .. 56810332
4273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26437

Sequence Viewer

Length: 1671 bp
ATGGCGGCAGACGGAGGGGCGCTTTCGATGTTTTCGGTTGTGGAGGATGTGCTTCAGCAGCACGGTACTAGTCGAATCGGAGATCTTGATTTGGTGGAGTCTAGAAAAGCTGAGCAAGCCGCGTCGAGAAGAAATGAGGCGGCTGGGTGGCTTAGAAAGGTGATTGGTGTCGTCGTGGCTAAAGATTTGCCGGCAGAGCCTTCTGAGGAAGAGTTCAGGCTTGGATTGAGAAGTGGGATTATCCTCTGCAATGCTATCAATAAGGTTCAACCCGGAGCAGTGCCCAAGGTGGTGGAAAGTCCATCTGATTCAGCTTTGATCCCTGATGGAGCATTGTCGGCGTTCCAATACTTTGAGAATCTGAGGAACTTCCTTGTTGCTATTGAGGGGATGGGGCTGCCTACGTTTGAGGCATCTGATCTTGAACAAGGAGGCAAATCTGCAAGGGTTGTAAATACAGTTCTGGCGCTCAAATCCTACAGTGAGTGGAAACATACGGGAGGAAATGGGACATGGAAATTCGGTGGAAATGTAAAACCGACCACGTCCATCAAGTCTTTTGTGAGAAAAAATTCGGAGCCATTTATGAATTCCTTGTCAAGGACCTCATCAATGAATGAAAAATCTTCGAACTCTTTCACCTCTGATCTCGATTCTAATCAAATGACTAGTTCCCGCTCCTTGAGTATGCTTGTCCGTGCAGTTCTGTTAGATAAGAAGCCTGAAGACGTTCCAATGTTGGTAGAGTCTGTTCTAAACAAGGTTGTGGAGCAATTTGAGCAACGCCTTTCCAGCCAATATGAATTGACAAATACAAGTCCAAAAGATGTCGCTGTTTCTCATGGCAACCAGCCTCCAATGAAATTCGCCTCTTGTGATAAAAGGATAGAAGACAATCTCAAAGTAATAAAGAGAGAGGAATCTTTTAATAAAAGTTACATCTCCGATGAGGAATCAAAAAGCCGGCTGCTTAAACAGCAAATGATTTTTGATCAACAACAAAGAGATGTTCGGGAACTAAAGCAAACCCTTCACACAACAAAATCTGGTATTCAGTTTATGAAAATGAAGTTTCATGAGGAGTTCCAGAATATTGGTTTGCACATTCATGGCCTAGCTCATGCTGCGAGTGGATATCACAAAGTTCTTGAAGAAAACCGAAAGCTCTACAATCAAGTCCAAGACCTCAAAGGAAGTATCAGGGTTTATTGTCGAGTGAGACCCTTTTTATCTGGACAGTCAAATTGTTTGAGCTGTGTGGATCATATGGAAGATGGAAATATCACTATTAACACCCCCTCAAGGCATGGGAAAGGACAAAGAACCTTCAGCTTCAATAAAGTCTTTGGGCCGTCTGCAACCCAAGCGGACGTCTTTTCTGACATGCAACCACTGATTCGTTCTGTCCTTGATGGTTACAATGTCTGCATATTTGCATATGGTCAAACAGGATCAGGGAAAACTTTCACCATGACTGGACCCAGAGAGCTTACAGAGAAAAGCCAAGGTGTAAATTATAGGGCTTTGGGAGACTTGTTTCTCATAGCAGATCAAAGAAAGGATACTTTCCATTATGATGTTTCTGTTCAGATGATTGAGATCTACAACGAGCAAGTCCGGGATCTCCTTGTTACTGATGGAGCTAACAAAAGATATCCTTTACTAGTTTAG

Protein Analysis

556

Amino Acids

62.05

Weight (kDa)

8.06

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 43 - 161 6.8e-13 Calponin homology (CH) domain
Microtub_bd PF16796 384 - 543 7.6e-45 Microtubule binding
Kinesin PF00225 405 - 548 6.4e-40 Kinesin motor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1374
AccBSI CCGCTC 1 cut(s) 678
AccII CGCG 1 cut(s) 122
AciI CCGC 5 cut(s) 5, 120, 140, 676, 1367
AclWI GGATC 4 cut(s) 313, 1269, 1459, 1629
AcsI RAATTY 4 cut(s) 518, 571, 589, 863
AcuI CTGAAG 3 cut(s) 38, 744, 1312
AcyI GRCGYC 1 cut(s) 1371
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 600, 1302
AgsI TTSAA 4 cut(s) 269, 425, 1151, 1336
AhlI ACTAGT 3 cut(s) 68, 668, 1663
AjiI CACGTC 1 cut(s) 546
AluBI AGCT 8 cut(s) 110, 314, 1118, 1165, 1254, 1332, 1489, 1643
AluI AGCT 8 cut(s) 110, 314, 1118, 1165, 1254, 1332, 1489, 1643
Alw26I GTCTC 2 cut(s) 1213, 1524
AlwI GGATC 4 cut(s) 313, 1269, 1459, 1629
AoxI GGCC 2 cut(s) 1111, 1349
ApeKI GCWGC 4 cut(s) 58, 397, 967, 1124
ApoI RAATTY 4 cut(s) 518, 571, 589, 863
Asp700I GAANNNNTTC 4 cut(s) 571, 635, 729, 1463
AspLEI GCGC 2 cut(s) 22, 469
AspS9I GGNCC 3 cut(s) 603, 1349, 1478
AsuC2I CCSGG 2 cut(s) 273, 1619
AsuHPI GGTGA 3 cut(s) 172, 631, 1459
AsuII TTCGAA 1 cut(s) 629
AvaII GGWCC 2 cut(s) 603, 1478
BaeGI GKGCMC 1 cut(s) 285
BbsI GAAGAC 2 cut(s) 732, 897
BbvI GCAGC 4 cut(s) 70, 384, 954, 1111
BccI CCATC 7 cut(s) 310, 320, 385, 557, 1268, 1406, 1631
BceAI ACGGC 1 cut(s) 1336
BciVI GTATCC 1 cut(s) 1555
BclI TGATCA 1 cut(s) 991
BcnI CCSGG 2 cut(s) 273, 1619
BcoDI GTCTC 2 cut(s) 1213, 1524
BcuI ACTAGT 3 cut(s) 68, 668, 1663
BfaI CTAG 5 cut(s) 69, 102, 669, 1115, 1664
BfmI CTRYAG 1 cut(s) 478
BfoI RGCGCY 2 cut(s) 23, 470
BfuI GTATCC 1 cut(s) 1555
BglII AGATCT 2 cut(s) 82, 1599
BisI GCNGC 7 cut(s) 6, 59, 120, 141, 398, 968, 1125
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 7 cut(s) 7, 60, 121, 142, 399, 969, 1126
Bme1390I CCNGG 2 cut(s) 273, 1619
Bme18I GGWCC 2 cut(s) 603, 1478
BmgBI CACGTC 1 cut(s) 546
BmgT120I GGNCC 3 cut(s) 603, 1349, 1478
BmiI GGNNCC 2 cut(s) 579, 1480
BmrFI CCNGG 2 cut(s) 273, 1619
BmsI GCATC 1 cut(s) 422
BpiI GAAGAC 2 cut(s) 732, 897
Bpu1102I GCTNAGC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 2 cut(s) 703, 1285
BpuMI CCSGG 2 cut(s) 273, 1619
BsaBI GATNNNNATC 2 cut(s) 657, 1598
BsaHI GRCGYC 1 cut(s) 1371
BsaI GGTCTC 1 cut(s) 1213
BsaJI CCNNGG 2 cut(s) 285, 1504
Bsc4I CCNNNNNNNGG 2 cut(s) 600, 1302
Bse118I RCCGGY 2 cut(s) 190, 963
Bse1I ACTGG 1 cut(s) 1480
Bse3DI GCAATG 1 cut(s) 256
Bse8I GATNNNNATC 2 cut(s) 657, 1598
BseDI CCNNGG 2 cut(s) 285, 1504
BseGI GGATG 2 cut(s) 52, 396
BseJI GATNNNNATC 2 cut(s) 657, 1598
BseLI CCNNNNNNNGG 2 cut(s) 600, 1302
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 3 cut(s) 102, 195, 353
BseNI ACTGG 1 cut(s) 1480
BseRI GAGGAG 1 cut(s) 1094
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 4 cut(s) 70, 384, 954, 1111
BseYI CCCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 720
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 1113, 1351
BsiSI CCGG 4 cut(s) 191, 273, 964, 1618
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 2 cut(s) 600, 1302
BsmAI GTCTC 2 cut(s) 1213, 1524
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 2 cut(s) 1113, 1351
Bso31I GGTCTC 1 cut(s) 1213
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 285
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 5 cut(s) 5, 120, 140, 676, 1367
BspANI GGCC 2 cut(s) 1113, 1351
BspCNI CTCAG 3 cut(s) 103, 196, 354
BspFNI CGCG 1 cut(s) 122
BspHI TCATGA 1 cut(s) 1075
BspLI GGNNCC 2 cut(s) 579, 1480
BspPI GGATC 4 cut(s) 313, 1269, 1459, 1629
BspT104I TTCGAA 1 cut(s) 629
BspTNI GGTCTC 1 cut(s) 1213
BsrBI CCGCTC 1 cut(s) 678
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 2 cut(s) 190, 963
BsrI ACTGG 1 cut(s) 1480
BssAI RCCGGY 2 cut(s) 190, 963
BssECI CCNNGG 2 cut(s) 285, 1504
BssNI GRCGYC 1 cut(s) 1371
BssT1I CCWWGG 2 cut(s) 285, 1504
Bst4CI ACNGT 4 cut(s) 65, 460, 482, 1239
Bst6I CTCTTC 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 1371
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 117, 192, 965
BstDEI CTNAG 4 cut(s) 111, 152, 204, 362
BstENI CCTNNNNNAGG 1 cut(s) 598
BstF5I GGATG 2 cut(s) 52, 396
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 2 cut(s) 23, 470
BstHHI GCGC 2 cut(s) 22, 469
BstMAI GTCTC 2 cut(s) 1213, 1524
BstMWI GCNNNNNNNGC 9 cut(s) 58, 116, 196, 338, 778, 792, 976, 1124, 1364
BstNSI RCATGY 1 cut(s) 1387
BstSCI CCNGG 2 cut(s) 271, 1617
BstSFI CTRYAG 1 cut(s) 478
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 4 cut(s) 70, 384, 954, 1111
BstV2I GAAGAC 2 cut(s) 732, 897
BstX2I RGATCY 3 cut(s) 82, 1599, 1621
BstXI CCANNNNNNTGG 2 cut(s) 292, 1094
BstYI RGATCY 3 cut(s) 82, 1599, 1621
BsuI GTATCC 1 cut(s) 1555
BsuRI GGCC 2 cut(s) 1113, 1351
BtrI CACGTC 1 cut(s) 546
BtsCI GGATG 2 cut(s) 52, 396
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 3 cut(s) 285, 487, 1391
Cac8I GCNNGC 3 cut(s) 117, 192, 965
CciI TCATGA 1 cut(s) 1075
CfoI GCGC 2 cut(s) 22, 469
Cfr10I RCCGGY 2 cut(s) 190, 963
Cfr13I GGNCC 3 cut(s) 603, 1349, 1478
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 66
CviAII CATG 8 cut(s) 513, 842, 1076, 1109, 1121, 1307, 1384, 1471
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 4 cut(s) 111, 152, 204, 362
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 285, 1504
Eco31I GGTCTC 1 cut(s) 1213
Eco32I GATATC 2 cut(s) 1136, 1655
Eco47I GGWCC 2 cut(s) 603, 1478
Eco57I CTGAAG 3 cut(s) 38, 744, 1312
EcoNI CCTNNNNNAGG 1 cut(s) 598
EcoO109I RGGNCCY 1 cut(s) 603
EcoRI GAATTC 1 cut(s) 589
EcoRV GATATC 2 cut(s) 1136, 1655
EcoT14I CCWWGG 2 cut(s) 285, 1504
ErhI CCWWGG 2 cut(s) 285, 1504
FaeI CATG 8 cut(s) 516, 845, 1079, 1112, 1124, 1310, 1387, 1474
FalI AAGNNNNNCTT 1 cut(s) 1642
FaqI GGGAC 1 cut(s) 523
FatI CATG 8 cut(s) 512, 841, 1075, 1108, 1120, 1306, 1383, 1470
FauI CCCGC 1 cut(s) 683
FauNDI CATATG 2 cut(s) 1266, 1438
FbaI TGATCA 1 cut(s) 991
Fnu4HI GCNGC 7 cut(s) 6, 59, 120, 141, 398, 968, 1125
FokI GGATG 2 cut(s) 59, 403
Fsp4HI GCNGC 7 cut(s) 6, 59, 120, 141, 398, 968, 1125
FspBI CTAG 5 cut(s) 69, 102, 669, 1115, 1664
GlaI GCGC 2 cut(s) 21, 468
GluI GCNGC 7 cut(s) 6, 59, 120, 141, 398, 968, 1125
GsaI CCCAGC 1 cut(s) 147
HaeII RGCGCY 2 cut(s) 23, 470
HaeIII GGCC 2 cut(s) 1113, 1351
HapII CCGG 4 cut(s) 191, 273, 964, 1618
HgaI GACGC 1 cut(s) 111
HhaI GCGC 2 cut(s) 22, 469
Hin1I GRCGYC 1 cut(s) 1371
Hin1II CATG 8 cut(s) 516, 845, 1079, 1112, 1124, 1310, 1387, 1474
Hin6I GCGC 2 cut(s) 20, 467
HinP1I GCGC 2 cut(s) 20, 467
HinfI GANTC 9 cut(s) 75, 98, 308, 358, 653, 746, 920, 953, 1396
HpaII CCGG 4 cut(s) 191, 273, 964, 1618
HphI GGTGA 3 cut(s) 172, 631, 1459
Hpy99I CGWCG 2 cut(s) 127, 176
HpyAV CCTTC 3 cut(s) 210, 1040, 1336
HpyCH4III ACNGT 4 cut(s) 65, 460, 482, 1239
HpyCH4IV ACGT 4 cut(s) 404, 545, 729, 1371
HpyCH4V TGCA 8 cut(s) 249, 443, 701, 1102, 1358, 1387, 1428, 1436
HpyF10VI GCNNNNNNNGC 9 cut(s) 58, 116, 196, 338, 778, 792, 976, 1124, 1364
HpyF3I CTNAG 4 cut(s) 111, 152, 204, 362
HpySE526I ACGT 4 cut(s) 404, 545, 729, 1371
Hsp92I GRCGYC 1 cut(s) 1371
Hsp92II CATG 8 cut(s) 516, 845, 1079, 1112, 1124, 1310, 1387, 1474
HspAI GCGC 2 cut(s) 20, 467
KroI GCCGGC 2 cut(s) 190, 963
KroNI GCCGGC 2 cut(s) 192, 965
Ksp22I TGATCA 1 cut(s) 991
LmnI GCTCC 6 cut(s) 275, 329, 577, 683, 769, 1640
Lsp1109I GCAGC 4 cut(s) 70, 384, 954, 1111
LweI GCATC 1 cut(s) 422
MaeI CTAG 5 cut(s) 69, 102, 669, 1115, 1664
MaeII ACGT 4 cut(s) 404, 545, 729, 1371
MaeIII GTNAC 3 cut(s) 935, 1415, 1630
MbiI CCGCTC 1 cut(s) 678
MboII GAAGA 7 cut(s) 141, 221, 618, 737, 902, 1163, 1283
MflI RGATCY 3 cut(s) 82, 1599, 1621
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 8 cut(s) 518, 571, 589, 773, 803, 863, 1243, 1513
MlyI GAGTC 2 cut(s) 107, 755
MroNI GCCGGC 2 cut(s) 190, 963
MroXI GAANNNNTTC 4 cut(s) 571, 635, 729, 1463
MseI TTAA 3 cut(s) 927, 972, 1290
MslI CAYNNNNRTG 2 cut(s) 1107, 1575
MspI CCGG 4 cut(s) 191, 273, 964, 1618
MspR9I CCNGG 2 cut(s) 273, 1619
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 9 cut(s) 58, 116, 196, 338, 778, 792, 976, 1124, 1364
NaeI GCCGGC 2 cut(s) 192, 965
NciI CCSGG 2 cut(s) 273, 1619
NdeI CATATG 2 cut(s) 1266, 1438
NgoMIV GCCGGC 2 cut(s) 190, 963
NlaIII CATG 8 cut(s) 516, 845, 1079, 1112, 1124, 1310, 1387, 1474
NlaIV GGNNCC 2 cut(s) 579, 1480
NspI RCATGY 1 cut(s) 1387
NspV TTCGAA 1 cut(s) 629
PagI TCATGA 1 cut(s) 1075
PdiI GCCGGC 2 cut(s) 192, 965
PdmI GAANNNNTTC 4 cut(s) 571, 635, 729, 1463
PfeI GAWTC 7 cut(s) 75, 308, 358, 653, 920, 953, 1396
PflFI GACNNNGTC 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 1617
PkrI GCNGC 7 cut(s) 7, 60, 121, 142, 399, 969, 1126
PleI GAGTC 2 cut(s) 106, 754
PpsI GAGTC 2 cut(s) 106, 754
PpuMI RGGWCCY 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 603
PspFI CCCAGC 1 cut(s) 143
PspN4I GGNNCC 2 cut(s) 579, 1480
PspPI GGNCC 3 cut(s) 603, 1349, 1478
PspPPI RGGWCCY 1 cut(s) 603
PsrI GAACNNNNNNTAC 4 cut(s) 444, 476, 735, 767
PsuI RGATCY 3 cut(s) 82, 1599, 1621
PsyI GACNNNGTC 1 cut(s) 544
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 2 cut(s) 1107, 1575
SaqAI TTAA 3 cut(s) 927, 972, 1290
SatI GCNGC 7 cut(s) 6, 59, 120, 141, 398, 968, 1125
Sau96I GGNCC 3 cut(s) 603, 1349, 1478
SchI GAGTC 2 cut(s) 107, 755
ScrFI CCNGG 2 cut(s) 273, 1619
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 1 cut(s) 422
SfcI CTRYAG 1 cut(s) 478
SfuI TTCGAA 1 cut(s) 629
SinI GGWCC 2 cut(s) 603, 1478
SmiMI CAYNNNNRTG 2 cut(s) 1107, 1575
SmlI CTYRAG 2 cut(s) 682, 1300
SmoI CTYRAG 2 cut(s) 682, 1300
SpeI ACTAGT 3 cut(s) 68, 668, 1663
Sse9I AATT 8 cut(s) 518, 571, 589, 773, 803, 863, 1243, 1513
SsiI CCGC 5 cut(s) 5, 120, 140, 676, 1367
SspI AATATT 1 cut(s) 1093
SspMI CTAG 5 cut(s) 69, 102, 669, 1115, 1664
StyD4I CCNGG 2 cut(s) 271, 1617
StyI CCWWGG 2 cut(s) 285, 1504
TaaI ACNGT 4 cut(s) 65, 460, 482, 1239
TaiI ACGT 4 cut(s) 407, 548, 732, 1374
TaqI TCGA 6 cut(s) 26, 73, 125, 629, 651, 1213
TasI AATT 8 cut(s) 518, 571, 589, 773, 803, 863, 1243, 1513
TauI GCSGC 3 cut(s) 8, 122, 143
TfiI GAWTC 7 cut(s) 75, 308, 358, 653, 920, 953, 1396
Tru1I TTAA 3 cut(s) 927, 972, 1290
Tru9I TTAA 3 cut(s) 927, 972, 1290
TscAI CASTG 3 cut(s) 285, 487, 1398
TseI GCWGC 4 cut(s) 58, 397, 967, 1124
TspDTI ATGAA 9 cut(s) 602, 629, 633, 816, 875, 1064, 1076, 1082, 1097
TspGWI ACGGA 2 cut(s) 27, 686
TspRI CASTG 3 cut(s) 285, 487, 1398
Tth111I GACNNNGTC 1 cut(s) 544
VpaK11BI GGWCC 2 cut(s) 603, 1478
XagI CCTNNNNNAGG 1 cut(s) 598
XapI RAATTY 4 cut(s) 518, 571, 589, 863
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 1387
XmnI GAANNNNTTC 4 cut(s) 571, 635, 729, 1463
XspI CTAG 5 cut(s) 69, 102, 669, 1115, 1664
ZraI GACGTC 1 cut(s) 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.