Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8460257.1

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1810

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8460257.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

agaagaaatgaggcggccgggtggcttagaaaggtgattggtgtcgtcgtggctaaagatttgccggcagagccttctgaggaagagttcaggcttggattgagaagtgggattatcctctgcaatgctatcaataaggttcaacccggagcagtgcccaaggtggtggaaagtccatctgattcagctttgatccctgatggagcattgtcggcgttccaatactttgagaatctgaggaacttccttgttgctattgaggggatggggctgcctacatttgaggcatctgatcttgaacaaggaggcaaatctgcaagggttgtaaatacagttctggcgctcaaatcctacagtgagtggaaacatacgggaggaaatgggacatggaaattcggtggaaatgtaaaaccgaccacgtccatcaagtcttttgtgagaaaaaattcggagccatttatgaattccttgtcaaggacctcatcaatgaatgaaaaatcttcaaactctttcacctctgatctcgattctaatcaaatgactagttcccgctccttgagtatgcttgtccgtgcagttctgttagataagaagcctgaagacgttccaatgttggtagagtctgttctaaacaaggttgtggagcaatttgagcaacgcctttccagccaatatgaatcgacaaatacaggtccaaaagatgtcgctgtttctcatggcaaccaacctccaatgaaattcgcctcttgtgataaaaggaactggattataactggattacctgtgtgttttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

265

Amino Acids

29.03

Weight (kDa)

8.4

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccBSI	CCGCTC	1 cut(s)	552
AciI	CCGC	2 cut(s)	14, 550
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	4 cut(s)	392, 445, 463, 737
AcuI	CTGAAG	1 cut(s)	618
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	143, 299, 504
AhlI	ACTAGT	1 cut(s)	542
AjiI	CACGTC	1 cut(s)	420
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	4 cut(s)	392, 445, 463, 737
Asp700I	GAANNNNTTC	2 cut(s)	445, 603
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	477, 692
AsuC2I	CCSGG	2 cut(s)	19, 147
AsuHPI	GGTGA	2 cut(s)	46, 505
AvaII	GGWCC	2 cut(s)	477, 692
BaeGI	GKGCMC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	4 cut(s)	184, 194, 259, 431
BcnI	CCSGG	2 cut(s)	19, 147
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	344
BisI	GCNGC	2 cut(s)	15, 272
BlsI	GCNGC	2 cut(s)	16, 273
Bme1390I	CCNGG	2 cut(s)	19, 147
Bme18I	GGWCC	2 cut(s)	477, 692
BmgBI	CACGTC	1 cut(s)	420
BmgT120I	GGNCC	2 cut(s)	477, 692
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	2 cut(s)	19, 147
BmsI	GCATC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	19, 147
BsaBI	GATNNNNATC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	767, 778
Bse3DI	GCAATG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	69, 227
BseNI	ACTGG	2 cut(s)	767, 778
BseSI	GKGCMC	1 cut(s)	159
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	3 cut(s)	18, 65, 147
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	192, 292, 520
BspACI	CCGC	2 cut(s)	14, 550
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	70, 228
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	767, 778
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	3 cut(s)	192, 292, 520
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	334, 356
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	3 cut(s)	26, 78, 236
BstENI	CCTNNNNNAGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	3 cut(s)	195, 295, 523
BstMBI	GATC	3 cut(s)	192, 292, 520
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 212, 652, 666
BstSCI	CCNGG	2 cut(s)	17, 145
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	606
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	17
BtrI	CACGTC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 361
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	477, 692
CviAII	CATG	2 cut(s)	387, 716
DdeI	CTNAG	3 cut(s)	26, 78, 236
DpnI	GATC	3 cut(s)	194, 294, 522
DpnII	GATC	3 cut(s)	192, 292, 520
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	477, 692
Eco52I	CGGCCG	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	618
EcoNI	CCTNNNNNAGG	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	390, 719
FaiI	YATR	7 cut(s)	369, 388, 461, 563, 675, 717, 770
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	2 cut(s)	386, 715
FauI	CCCGC	1 cut(s)	557
Fnu4HI	GCNGC	2 cut(s)	15, 272
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	2 cut(s)	15, 272
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	15, 272
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	3 cut(s)	18, 65, 147
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	390, 719
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	5 cut(s)	182, 232, 527, 620, 677
HpaII	CCGG	3 cut(s)	18, 65, 147
HphI	GGTGA	2 cut(s)	46, 505
Hpy188I	TCNGA	6 cut(s)	79, 181, 237, 292, 451, 520
Hpy188III	TCNNGA	2 cut(s)	296, 524
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	2 cut(s)	334, 356
HpyCH4IV	ACGT	2 cut(s)	419, 603
HpyCH4V	TGCA	3 cut(s)	123, 317, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 212, 652, 666
HpyF3I	CTNAG	3 cut(s)	26, 78, 236
HpySE526I	ACGT	2 cut(s)	419, 603
Hsp92II	CATG	2 cut(s)	390, 719
HspAI	GCGC	1 cut(s)	341
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	192, 292, 520
LmnI	GCTCC	5 cut(s)	149, 203, 451, 557, 643
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	419, 603
MalI	GATC	3 cut(s)	194, 294, 522
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	3 cut(s)	192, 292, 520
MboII	GAAGA	4 cut(s)	15, 95, 492, 611
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	5 cut(s)	392, 445, 463, 647, 737
MlyI	GAGTC	1 cut(s)	629
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	2 cut(s)	445, 603
MspI	CCGG	3 cut(s)	18, 65, 147
MspR9I	CCNGG	2 cut(s)	19, 147
MwoI	GCNNNNNNNGC	4 cut(s)	70, 212, 652, 666
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	2 cut(s)	19, 147
NdeII	GATC	3 cut(s)	192, 292, 520
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	390, 719
NlaIV	GGNNCC	1 cut(s)	453
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	2 cut(s)	445, 603
PfeI	GAWTC	4 cut(s)	182, 232, 527, 677
PflFI	GACNNNGTC	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	16, 273
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	477
PsiI	TTATAA	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	2 cut(s)	477, 692
PspPPI	RGGWCCY	1 cut(s)	477
PsrI	GAACNNNNNNTAC	4 cut(s)	318, 350, 609, 641
PsyI	GACNNNGTC	1 cut(s)	418
SatI	GCNGC	2 cut(s)	15, 272
Sau3AI	GATC	3 cut(s)	192, 292, 520
Sau96I	GGNCC	2 cut(s)	477, 692
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	2 cut(s)	19, 147
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	2 cut(s)	477, 692
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	5 cut(s)	392, 445, 463, 647, 737
SsiI	CCGC	2 cut(s)	14, 550
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	17, 145
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	334, 356
TaiI	ACGT	2 cut(s)	422, 606
TaqI	TCGA	2 cut(s)	525, 680
TasI	AATT	5 cut(s)	392, 445, 463, 647, 737
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	4 cut(s)	182, 232, 527, 677
TscAI	CASTG	2 cut(s)	159, 361
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	5 cut(s)	476, 503, 507, 690, 749
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	2 cut(s)	159, 361
Tth111I	GACNNNGTC	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	477, 692
XagI	CCTNNNNNAGG	1 cut(s)	472
XapI	RAATTY	4 cut(s)	392, 445, 463, 737
XmnI	GAANNNNTTC	2 cut(s)	445, 603
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.