Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042489.1

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2446

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042489.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atggaagatggaaatatcactattaacaccccctcaaggcatgggaaaggacaaagaaccttcagcttcaataaggtctttgggccgtctgcaacccaagcggacgtcttttccgacatgcaaccactgattcgttctgtccttgatggttacaatgtctgcatatttgcatatggtcaaacaggatcagggaaaactttcaccatgacaggtctcagtgtgccagatgcaaatattattcgtgtctcctcgacatctgatgttattgatctaatgaaccttggacataagaatcgggttgttggtgcaactgctctaaatgatcgaagtagtcgctctcacagctgcttgactgttcacgttcaaggacaggatttgactactggatctattcttcgtggctgtatgcacctggttgatcttgcgggaagtgagagggtagacaaatccgaggtaacaggagatagattgaaggaagcacaacatattaatagatctctctcagctttgggtgatgtgattgcttcccttgcacaaaagaatcctcatgttccttataggaatagcaagctaacacagttgctccaagattcacttggtggacaggccaagacgcttatgtttgttcacataagccctgagccagatgctattggtgaaagtataagtacacttaagtttgctgaacgagtagccacagttgagcttggtgctgccaaagtaaacaaagatggtgcagatgtgaaagctctcaaagaacagattgctggtcttagggcagcactggccaggagagaagaggaagccgaacaacgccctgttctaggcagctctgataaatacaagacaaaagcaggggaattgtcacctcttcctctgaaccatcagggtacagacatcatgggagaacagtttggcttccggcaaccaatgggaaatcttggcaatattgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

318

Amino Acids

34.24

Weight (kDa)

7.13

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	2 cut(s)	101, 425
AclWI	GGATC	2 cut(s)	193, 394
AcoI	YGGCCR	1 cut(s)	786
AcuI	CTGAAG	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	599
AfaI	GTAC	2 cut(s)	670, 892
AfiI	CCNNNNNNNGG	2 cut(s)	36, 824
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	3 cut(s)	70, 365, 472
AjnI	CCWGG	2 cut(s)	411, 788
AluBI	AGCT	7 cut(s)	66, 345, 506, 571, 706, 749, 831
AluI	AGCT	7 cut(s)	66, 345, 506, 571, 706, 749, 831
Alw26I	GTCTC	2 cut(s)	218, 250
AlwI	GGATC	2 cut(s)	193, 394
AoxI	GGCC	3 cut(s)	83, 606, 786
ApeKI	GCWGC	4 cut(s)	345, 713, 779, 828
AseI	ATTAAT	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	4 cut(s)	193, 524, 668, 858
BalI	TGGCCA	1 cut(s)	788
BbvI	GCAGC	4 cut(s)	332, 700, 791, 840
BccI	CCATC	4 cut(s)	2, 140, 725, 891
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	413, 790
BcoDI	GTCTC	2 cut(s)	218, 250
BfaI	CTAG	1 cut(s)	824
BfrI	CTTAAG	1 cut(s)	674
BglII	AGATCT	1 cut(s)	494
BisI	GCNGC	4 cut(s)	346, 714, 780, 829
BlsI	GCNGC	4 cut(s)	347, 715, 781, 830
Bme1390I	CCNGG	2 cut(s)	413, 790
BmgT120I	GGNCC	1 cut(s)	83
BmrFI	CCNGG	2 cut(s)	413, 790
BmsI	GCATC	2 cut(s)	217, 637
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	280, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 824
Bse1I	ACTGG	2 cut(s)	388, 789
BseBI	CCWGG	2 cut(s)	413, 790
BseDI	CCNNGG	2 cut(s)	280, 450
BseLI	CCNNNNNNNGG	2 cut(s)	36, 824
BseMII	CTCAG	3 cut(s)	229, 516, 630
BseNI	ACTGG	2 cut(s)	388, 789
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	4 cut(s)	332, 700, 791, 840
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	3 cut(s)	85, 608, 788
BsiSI	CCGG	1 cut(s)	922
BslI	CCNNNNNNNGG	2 cut(s)	36, 824
BsmAI	GTCTC	2 cut(s)	218, 250
BsnI	GGCC	3 cut(s)	85, 608, 788
Bso31I	GGTCTC	1 cut(s)	218
Bsp143I	GATC	6 cut(s)	185, 268, 322, 386, 418, 494
BspACI	CCGC	2 cut(s)	101, 425
BspANI	GGCC	3 cut(s)	85, 608, 788
BspCNI	CTCAG	3 cut(s)	228, 515, 631
BspPI	GGATC	2 cut(s)	193, 394
BspTI	CTTAAG	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	388, 789
BssECI	CCNNGG	2 cut(s)	280, 450
BssMI	GATC	6 cut(s)	185, 268, 322, 386, 418, 494
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	413, 790
Bst4CI	ACNGT	4 cut(s)	355, 579, 700, 912
Bst6I	CTCTTC	2 cut(s)	792, 876
BstACI	GRCGYC	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	674
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	4 cut(s)	215, 502, 639, 773
BstENI	CCTNNNNNAGG	1 cut(s)	822
BstKTI	GATC	6 cut(s)	188, 271, 325, 389, 421, 497
BstMAI	GTCTC	2 cut(s)	218, 250
BstMBI	GATC	6 cut(s)	185, 268, 322, 386, 418, 494
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 342, 530, 785
BstNI	CCWGG	2 cut(s)	413, 790
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	411, 788
BstV1I	GCAGC	4 cut(s)	332, 700, 791, 840
BstX2I	RGATCY	2 cut(s)	386, 494
BstYI	RGATCY	2 cut(s)	386, 494
BsuRI	GGCC	3 cut(s)	85, 608, 788
BtsIMutI	CAGTG	3 cut(s)	125, 223, 782
Cac8I	GCNNGC	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	1 cut(s)	622
CsiI	ACCWGGT	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	669, 891
CviAII	CATG	5 cut(s)	41, 118, 205, 548, 901
CviQI	GTAC	2 cut(s)	669, 891
DdeI	CTNAG	4 cut(s)	215, 502, 639, 773
DpnI	GATC	6 cut(s)	187, 270, 324, 388, 420, 496
DpnII	GATC	6 cut(s)	185, 268, 322, 386, 418, 494
DraIII	CACNNNGTG	1 cut(s)	599
EaeI	YGGCCR	1 cut(s)	786
Eam1104I	CTCTTC	2 cut(s)	792, 876
EarI	CTCTTC	2 cut(s)	792, 876
Eco130I	CCWWGG	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	822
EcoRII	CCWGG	2 cut(s)	411, 788
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	5 cut(s)	44, 121, 208, 551, 904
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	5 cut(s)	40, 117, 204, 547, 900
FauI	CCCGC	1 cut(s)	418
FauNDI	CATATG	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	346, 714, 780, 829
Fsp4HI	GCNGC	4 cut(s)	346, 714, 780, 829
FspBI	CTAG	1 cut(s)	824
GluI	GCNGC	4 cut(s)	346, 714, 780, 829
HaeIII	GGCC	3 cut(s)	85, 608, 788
HapII	CCGG	1 cut(s)	922
HgaI	GACGC	1 cut(s)	622
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	5 cut(s)	44, 121, 208, 551, 904
HinfI	GANTC	4 cut(s)	130, 292, 541, 590
HpaII	CCGG	1 cut(s)	922
HphI	GGTGA	4 cut(s)	193, 524, 668, 858
Hpy166II	GTNNAC	6 cut(s)	358, 442, 602, 628, 671, 724
Hpy188I	TCNGA	5 cut(s)	115, 259, 451, 835, 879
Hpy8I	GTNNAC	6 cut(s)	358, 442, 602, 628, 671, 724
HpyAV	CCTTC	2 cut(s)	70, 466
HpyCH4III	ACNGT	4 cut(s)	355, 579, 700, 912
HpyCH4IV	ACGT	2 cut(s)	105, 360
HpyCH4V	TGCA	9 cut(s)	92, 121, 162, 170, 230, 308, 409, 533, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 342, 530, 785
HpyF3I	CTNAG	4 cut(s)	215, 502, 639, 773
HpySE526I	ACGT	2 cut(s)	105, 360
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	5 cut(s)	44, 121, 208, 551, 904
Kzo9I	GATC	6 cut(s)	185, 268, 322, 386, 418, 494
LmnI	GCTCC	1 cut(s)	588
Lsp1109I	GCAGC	4 cut(s)	332, 700, 791, 840
LweI	GCATC	2 cut(s)	217, 637
MabI	ACCWGGT	1 cut(s)	411
MaeI	CTAG	1 cut(s)	824
MaeII	ACGT	2 cut(s)	105, 360
MaeIII	GTNAC	3 cut(s)	149, 454, 864
MalI	GATC	6 cut(s)	187, 270, 324, 388, 420, 496
MboI	GATC	6 cut(s)	185, 268, 322, 386, 418, 494
MboII	GAAGA	4 cut(s)	17, 386, 809, 863
MflI	RGATCY	2 cut(s)	386, 494
MlsI	TGGCCA	1 cut(s)	788
MluCI	AATT	1 cut(s)	860
MluNI	TGGCCA	1 cut(s)	788
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	8 cut(s)	43, 259, 429, 445, 555, 793, 879, 885
Mox20I	TGGCCA	1 cut(s)	788
MroXI	GAANNNNTTC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	3 cut(s)	24, 489, 675
Msp20I	TGGCCA	1 cut(s)	788
MspA1I	CMGCKG	1 cut(s)	345
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	1 cut(s)	922
MspR9I	CCNGG	2 cut(s)	413, 790
MvaI	CCWGG	2 cut(s)	413, 790
MwoI	GCNNNNNNNGC	4 cut(s)	98, 342, 530, 785
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	6 cut(s)	185, 268, 322, 386, 418, 494
NlaIII	CATG	5 cut(s)	44, 121, 208, 551, 904
NmuCI	GTSAC	1 cut(s)	864
NspI	RCATGY	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	4 cut(s)	130, 292, 541, 590
PkrI	GCNGC	4 cut(s)	347, 715, 781, 830
PshBI	ATTAAT	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	411, 788
PspGI	CCWGG	2 cut(s)	411, 788
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	386, 494
PvuII	CAGCTG	1 cut(s)	345
RsaI	GTAC	2 cut(s)	670, 892
RsaNI	GTAC	2 cut(s)	669, 891
SaqAI	TTAA	3 cut(s)	24, 489, 675
SatI	GCNGC	4 cut(s)	346, 714, 780, 829
Sau3AI	GATC	6 cut(s)	185, 268, 322, 386, 418, 494
Sau96I	GGNCC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	413, 790
SexAI	ACCWGGT	1 cut(s)	411
SfaNI	GCATC	2 cut(s)	217, 637
SmlI	CTYRAG	2 cut(s)	34, 674
SmoI	CTYRAG	2 cut(s)	34, 674
Sse9I	AATT	1 cut(s)	860
SsiI	CCGC	2 cut(s)	101, 425
SspI	AATATT	2 cut(s)	235, 949
SspMI	CTAG	1 cut(s)	824
StyD4I	CCNGG	2 cut(s)	411, 788
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	4 cut(s)	355, 579, 700, 912
TaiI	ACGT	2 cut(s)	108, 363
TaqI	TCGA	2 cut(s)	251, 325
TasI	AATT	1 cut(s)	860
TatI	WGTACW	1 cut(s)	668
TfiI	GAWTC	4 cut(s)	130, 292, 541, 590
Tru1I	TTAA	3 cut(s)	24, 489, 675
Tru9I	TTAA	3 cut(s)	24, 489, 675
TscAI	CASTG	3 cut(s)	132, 223, 789
TseFI	GTSAC	1 cut(s)	864
TseI	GCWGC	4 cut(s)	345, 713, 779, 828
Tsp45I	GTSAC	1 cut(s)	864
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	3 cut(s)	132, 223, 789
Vha464I	CTTAAG	1 cut(s)	674
VspI	ATTAAT	1 cut(s)	489
XagI	CCTNNNNNAGG	1 cut(s)	822
XceI	RCATGY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	824
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.