Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004268.1

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Forward (+)

8107 .. 9465

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004268.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ctggccaggagagaagaggaagccgaacaacgccctgttctaggcagctctgataaatacaagacaaaagcaggggaattgtcacctcttcctctgaaccatcagggtacagacatcatgggagaacagtttggcttccggcaaccaatgggaaatcttggcaatattgagcttcataacaactctgccccaaggcaaaaaagacaaaactttgatgttgatgagctactagcaaattcacctccatggcccccagttaagagtcctggccagaatcgtggggatgatgataaagacatgggctcaggtgactgggtcgataaagttatggtgaacaagcaagaagtaagcagagttggaaatcccttgggaggctggggagcagacaatgagaacttatctgatgctttctaccaaaaatatctccaagattcttctaaaatttatccagaacaatcctacaacatgttcacagcaagcaacgggatcagtgttgctagtaatgatgatattgatgaccttgatgctgccactagcgattcttcagagccagatttgctctggcaattcaatcaaactaaacttatcagcacaggcaacggcattgggtctaaaaccaagaaacctaacgcaaagccagtaaaaagcccagaactaagcaagcatttgaatccttctctgggcccttcgccttcacggaaacctttgaatgggttgccacataggacagcaaggcagccagctccaacagctgagatgaaacgcaaagctgctcatagaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

261

Amino Acids

28.73

Weight (kDa)

7.16

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	2 cut(s)	3, 268
AcsI	RAATTY	2 cut(s)	235, 441
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	4 cut(s)	41, 371, 680, 710
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	571, 670, 709
AjnI	CCWGG	2 cut(s)	5, 265
AluBI	AGCT	6 cut(s)	48, 172, 226, 743, 752, 770
AluI	AGCT	6 cut(s)	48, 172, 226, 743, 752, 770
AlwI	GGATC	1 cut(s)	494
AoxI	GGCC	4 cut(s)	3, 248, 268, 682
ApaI	GGGCCC	1 cut(s)	686
ApeKI	GCWGC	4 cut(s)	45, 527, 736, 770
ApoI	RAATTY	2 cut(s)	235, 441
AspS9I	GGNCC	3 cut(s)	249, 682, 683
AsuHPI	GGTGA	4 cut(s)	75, 231, 320, 343
BaeGI	GKGCMC	1 cut(s)	686
BalI	TGGCCA	2 cut(s)	5, 270
BanII	GRGCYC	2 cut(s)	305, 686
BbvI	GCAGC	4 cut(s)	57, 514, 748, 757
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	2 cut(s)	7, 267
BfaI	CTAG	4 cut(s)	41, 230, 498, 534
BisI	GCNGC	4 cut(s)	46, 528, 737, 771
BlsI	GCNGC	4 cut(s)	47, 529, 738, 772
Bme1390I	CCNGG	2 cut(s)	7, 267
BmgT120I	GGNCC	3 cut(s)	249, 682, 683
BmiI	GGNNCC	2 cut(s)	251, 684
BmrFI	CCNGG	2 cut(s)	7, 267
BmrI	ACTGGG	2 cut(s)	248, 322
BmsI	GCATC	2 cut(s)	394, 514
BmuI	ACTGGG	2 cut(s)	248, 322
Bpu10I	CCTNAGC	1 cut(s)	304
BsaJI	CCNNGG	3 cut(s)	191, 245, 366
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 371, 680, 710
Bse1I	ACTGG	3 cut(s)	254, 317, 638
BseBI	CCWGG	2 cut(s)	7, 267
BseDI	CCNNGG	3 cut(s)	191, 245, 366
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	4 cut(s)	41, 371, 680, 710
BseMII	CTCAG	2 cut(s)	318, 744
BseNI	ACTGG	3 cut(s)	254, 317, 638
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	4 cut(s)	57, 514, 748, 757
BseYI	CCCAGC	1 cut(s)	375
BshFI	GGCC	4 cut(s)	5, 250, 270, 684
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	4 cut(s)	41, 371, 680, 710
BsnI	GGCC	4 cut(s)	5, 250, 270, 684
Bsp120I	GGGCCC	1 cut(s)	682
Bsp1286I	GDGCHC	2 cut(s)	305, 686
Bsp143I	GATC	1 cut(s)	486
Bsp19I	CCATGG	1 cut(s)	245
BspANI	GGCC	4 cut(s)	5, 250, 270, 684
BspCNI	CTCAG	2 cut(s)	317, 745
BspLI	GGNNCC	2 cut(s)	251, 684
BspPI	GGATC	1 cut(s)	494
BsrI	ACTGG	3 cut(s)	254, 317, 638
BssECI	CCNNGG	3 cut(s)	191, 245, 366
BssMI	GATC	1 cut(s)	486
BssT1I	CCWWGG	3 cut(s)	191, 245, 366
Bst2UI	CCWGG	2 cut(s)	7, 267
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	9, 93
BstC8I	GCNNGC	3 cut(s)	478, 662, 741
BstDEI	CTNAG	3 cut(s)	304, 656, 753
BstDSI	CCRYGG	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	1 cut(s)	489
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	2 cut(s)	556, 749
BstNI	CCWGG	2 cut(s)	7, 267
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	5, 265
BstSLI	GKGCMC	1 cut(s)	686
BstV1I	GCAGC	4 cut(s)	57, 514, 748, 757
BstXI	CCANNNNNNTGG	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	5, 250, 270, 684
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	496
Cac8I	GCNNGC	3 cut(s)	478, 662, 741
Cfr13I	GGNCC	3 cut(s)	249, 682, 683
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	4 cut(s)	118, 246, 298, 466
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	304, 656, 753
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
EaeI	YGGCCR	2 cut(s)	3, 268
Eam1104I	CTCTTC	2 cut(s)	9, 93
EarI	CTCTTC	2 cut(s)	9, 93
Eco130I	CCWWGG	3 cut(s)	191, 245, 366
Eco24I	GRGCYC	2 cut(s)	305, 686
Eco57I	CTGAAG	1 cut(s)	528
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	5, 265
EcoT14I	CCWWGG	3 cut(s)	191, 245, 366
EcoT38I	GRGCYC	2 cut(s)	305, 686
ErhI	CCWWGG	3 cut(s)	191, 245, 366
FaeI	CATG	4 cut(s)	121, 249, 301, 469
FaiI	YATR	8 cut(s)	119, 177, 247, 299, 329, 467, 723, 777
FatI	CATG	4 cut(s)	117, 245, 297, 465
Fnu4HI	GCNGC	4 cut(s)	46, 528, 737, 771
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	2 cut(s)	305, 686
Fsp4HI	GCNGC	4 cut(s)	46, 528, 737, 771
FspBI	CTAG	4 cut(s)	41, 230, 498, 534
GluI	GCNGC	4 cut(s)	46, 528, 737, 771
GsaI	CCCAGC	1 cut(s)	379
HaeIII	GGCC	4 cut(s)	5, 250, 270, 684
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	4 cut(s)	121, 249, 301, 469
HinfI	GANTC	5 cut(s)	262, 274, 431, 539, 670
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	4 cut(s)	75, 231, 320, 343
Hpy166II	GTNNAC	2 cut(s)	334, 471
Hpy188I	TCNGA	4 cut(s)	52, 96, 403, 547
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	2 cut(s)	334, 471
HpyAV	CCTTC	3 cut(s)	684, 696, 702
HpyCH4III	ACNGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	2 cut(s)	556, 749
HpyF3I	CTNAG	3 cut(s)	304, 656, 753
Hsp92II	CATG	4 cut(s)	121, 249, 301, 469
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	380, 748
Lsp1109I	GCAGC	4 cut(s)	57, 514, 748, 757
LweI	GCATC	2 cut(s)	394, 514
MaeI	CTAG	4 cut(s)	41, 230, 498, 534
MaeIII	GTNAC	2 cut(s)	81, 308
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	4 cut(s)	26, 80, 426, 534
MhlI	GDGCHC	2 cut(s)	305, 686
MlsI	TGGCCA	2 cut(s)	5, 270
MluCI	AATT	4 cut(s)	77, 235, 441, 566
MluNI	TGGCCA	2 cut(s)	5, 270
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	337, 770
MnlI	CCTC	5 cut(s)	10, 96, 102, 252, 365
Mox20I	TGGCCA	2 cut(s)	5, 270
MscI	TGGCCA	2 cut(s)	5, 270
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	244
Msp20I	TGGCCA	2 cut(s)	5, 270
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	7, 267
MvaI	CCWGG	2 cut(s)	7, 267
MwoI	GCNNNNNNNGC	2 cut(s)	556, 749
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	4 cut(s)	121, 249, 301, 469
NlaIV	GGNNCC	2 cut(s)	251, 684
NmuCI	GTSAC	2 cut(s)	81, 308
NspI	RCATGY	1 cut(s)	469
PciI	ACATGT	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	274, 431, 539, 670
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	47, 529, 738, 772
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PscI	ACATGT	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	5, 265
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	2 cut(s)	5, 265
PspN4I	GGNNCC	2 cut(s)	251, 684
PspOMI	GGGCCC	1 cut(s)	682
PspPI	GGNCC	3 cut(s)	249, 682, 683
PsyI	GACNNNGTC	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	4 cut(s)	46, 528, 737, 771
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	3 cut(s)	249, 682, 683
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	7, 267
SduI	GDGCHC	2 cut(s)	305, 686
SfaNI	GCATC	2 cut(s)	394, 514
SmiMI	CAYNNNNRTG	1 cut(s)	244
Sse9I	AATT	4 cut(s)	77, 235, 441, 566
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	4 cut(s)	41, 230, 498, 534
StyD4I	CCNGG	2 cut(s)	5, 265
StyI	CCWWGG	3 cut(s)	191, 245, 366
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	318
TasI	AATT	4 cut(s)	77, 235, 441, 566
TfiI	GAWTC	4 cut(s)	274, 431, 539, 670
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	81, 308
TseI	GCWGC	4 cut(s)	45, 527, 736, 770
Tsp45I	GTSAC	2 cut(s)	81, 308
TspDTI	ATGAA	2 cut(s)	164, 773
TspGWI	ACGGA	1 cut(s)	712
TspRI	CASTG	1 cut(s)	496
Tth111I	GACNNNGTC	1 cut(s)	314
XagI	CCTNNNNNAGG	1 cut(s)	39
XapI	RAATTY	2 cut(s)	235, 441
XceI	RCATGY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XspI	CTAG	4 cut(s)	41, 230, 498, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.