Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Reverse (-)

45368966 .. 45370716

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGTGATTCTCTACCAACTGGAGGTGTGGTTAGTGGTGGTGAGGGTAATGGAGACCGGGTTGGAGACGACATTGCTTGTCTTCCTTTCTCAGAGTTGGCTTTGACTTACACCGAAGATGATGGTGGTGGCGGTAGCATGAACGACGGTGGTGGTACTAATTATGGTGGCCACAATGGTGATTCTGTTGGTGGCTGTCTTGGGTTAGCAACGGTGTTGCATGCTAGGGTTTCCCCTAGATGGGGCTATTGGGCTCCAAGTTGGAAGTGGGTATTTGTTTTAGGTTTGGATCTGCCTAACGGAGATTCTTCCCCTCTGGTGATGATGGATGCAGTTGATGGGGGTGGCGGTGGCTGTGTTCTATGGCGGGGCTGCGGGTTGTCCCGATCGGTCTTTGAAGGGGGTGCTGGTGGATTTGGCATGCTTGGCGTCGATGCTCGTGACAGCATTGGCAGTCCGGTAGCCTCTGCTTTTGAGGCGGATGGCTGGGATAAGGACAGGCGGGGTTTACAGGGGGTTATGCTGGAGCTGAGTGATGGTGGTGGCGGTGCTGTGGTGGAAGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

18.99

Weight (kDa)

4.1

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	132, 348, 367, 375, 479, 502, 546
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	4 cut(s)	23, 240, 241, 242
AgsI	TTSAA	1 cut(s)	398
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	529
AluI	AGCT	1 cut(s)	529
Alw26I	GTCTC	2 cut(s)	48, 60
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	372
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	4 cut(s)	17, 53, 191, 331
BalI	TGGCCA	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	6 cut(s)	116, 234, 319, 332, 476, 530
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	48, 60
BfaI	CTAG	2 cut(s)	225, 237
BisI	GCNGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	319, 424
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	2 cut(s)	42, 545
BpuMI	CCSGG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 45, 75
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 240, 241, 242
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	334, 487
BseLI	CCNNNNNNNGG	4 cut(s)	23, 240, 241, 242
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	105, 521
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	359
BseYI	CCCAGC	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	58, 458
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	4 cut(s)	23, 240, 241, 242
BsmAI	GTCTC	2 cut(s)	48, 60
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	289, 386
BspACI	CCGC	7 cut(s)	132, 348, 367, 375, 479, 502, 546
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	104, 522
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	289, 386
BssNI	GRCGYC	1 cut(s)	429
BssSI	CACGAG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	149, 214
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	222, 422
BstDEI	CTNAG	2 cut(s)	91, 530
BstF5I	GGATG	2 cut(s)	334, 487
BstKTI	GATC	2 cut(s)	292, 389
BstMAI	GTCTC	2 cut(s)	48, 60
BstMBI	GATC	2 cut(s)	289, 386
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	2 cut(s)	426, 476
BstNSI	RCATGY	2 cut(s)	224, 424
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	359
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	334, 487
Cac8I	GCNNGC	2 cut(s)	222, 422
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	3 cut(s)	139, 221, 421
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	91, 530
DpnI	GATC	2 cut(s)	291, 388
DpnII	GATC	2 cut(s)	289, 386
EaeI	YGGCCR	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	3 cut(s)	142, 224, 424
FaiI	YATR	6 cut(s)	140, 165, 222, 364, 422, 521
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	138, 220, 420
FauI	CCCGC	3 cut(s)	360, 368, 495
Fnu4HI	GCNGC	1 cut(s)	373
FokI	GGATG	2 cut(s)	341, 494
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	373
FspBI	CTAG	2 cut(s)	225, 237
GluI	GCNGC	1 cut(s)	373
GsaI	CCCAGC	1 cut(s)	490
GsuI	CTGGAG	2 cut(s)	42, 545
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	2 cut(s)	58, 458
HgaI	GACGC	1 cut(s)	418
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	142, 224, 424
HinfI	GANTC	3 cut(s)	8, 182, 305
HpaII	CCGG	2 cut(s)	58, 458
HphI	GGTGA	4 cut(s)	17, 53, 191, 331
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	384, 440
Hpy8I	GTNNAC	1 cut(s)	509
Hpy99I	CGWCG	2 cut(s)	149, 434
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	149, 214
HpyCH4V	TGCA	2 cut(s)	220, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	426, 476
HpyF3I	CTNAG	2 cut(s)	91, 530
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	142, 224, 424
Kzo9I	GATC	2 cut(s)	289, 386
LmnI	GCTCC	2 cut(s)	259, 526
LpnPI	CCDG	9 cut(s)	6, 71, 302, 393, 471, 472, 484, 497, 509
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	2 cut(s)	319, 424
MaeI	CTAG	2 cut(s)	225, 237
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	2 cut(s)	291, 388
MboI	GATC	2 cut(s)	289, 386
MboII	GAAGA	3 cut(s)	74, 128, 300
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	1 cut(s)	160
MluNI	TGGCCA	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	43, 242
MnlI	CCTC	5 cut(s)	17, 37, 324, 469, 475
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	568
MslI	CAYNNNNRTG	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	2 cut(s)	58, 458
MspR9I	CCNGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	426, 476
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	289, 386
NlaIII	CATG	3 cut(s)	142, 224, 424
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	440
NspI	RCATGY	2 cut(s)	224, 424
OliI	CACNNNNGTG	1 cut(s)	177
PaeI	GCATGC	2 cut(s)	224, 424
PfeI	GAWTC	3 cut(s)	8, 182, 305
PkrI	GCNGC	1 cut(s)	374
Ple19I	CGATCG	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	289
PvuI	CGATCG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	568
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	2 cut(s)	289, 386
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	3 cut(s)	28, 286, 531
SfaNI	GCATC	2 cut(s)	319, 424
SmiMI	CAYNNNNRTG	1 cut(s)	177
SphI	GCATGC	2 cut(s)	224, 424
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	7 cut(s)	132, 348, 367, 375, 479, 502, 546
SspMI	CTAG	2 cut(s)	225, 237
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	149, 214
TaqI	TCGA	1 cut(s)	432
TaqII	GACCGA	1 cut(s)	379
TasI	AATT	1 cut(s)	160
TfiI	GAWTC	3 cut(s)	8, 182, 305
Tru1I	TTAA	1 cut(s)	568
Tru9I	TTAA	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	372
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	315
XceI	RCATGY	2 cut(s)	224, 424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XspI	CTAG	2 cut(s)	225, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.