Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004268.1

Orthogroup ID

OG0004268

Physical Location & Seq

Genomic Coordinates Reverse (-)

6241 .. 8048

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004268.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgattcctaagctaaccattttgaagaaccacataagtgacatttcgacagaaaagcctgtaaacacctgttctttgagagctttcacatctgcaccatctttgtttactttggcagcaccaagctcaactgtggctactcgttcagcaaacttaagtgtacttatactttcaccaatagcatctggctcagggcttatgtatgttcacataagccctgagccagatgctattggtgaaagtataagtacacttaagtttgctgaacgagtagccacagttgagcttggtgctgccaaagtaaacaaagatggtgcagatgtgaaagctctcaaagaacagattgctggtcttagggcagcactggccaggagagaagaggaagccgaacaacgccctgttctaggcagctctgataaatacaagacaaaagcaggggaattgtcacctcttcctctgaaccatcagggtacagacatcatgggagaacagtttggcttccggcaaccaatgggaaatcttggcaatattgagcttcataacaactctgccccaaggcaaaaaagacaaaactttgatgttgatgagctactagcaaattcacctccatggcccccagttaagagtcctggccagaatcgtggggatgatgataaagacatgggctcaggtgactgggtcgataaagttatggtgaacaagcaagaagtaagcagagttggaaatcccttgggaggctggggagcagacaatgagaacttatctgatgctttctaccaaaaatatctccaagattcttctaaaatttatccagaacaatcctacaacatgttcacagcaagcaacgggatcagtgttgctagtaatgatgatattgatgaccttgatgctgccactagcgattcttcagagccagatttgctctggcaattcaatcaaactaaacttatcagcacaggcaacggcattgggtctaaaaccaagaaacctaacgcaaagccagtaaaaagcccagaactaagcaagcatttgaatccttctctgggcccttcgccttcacggaaacctttgaatgggttgccacataggacagcaaggcagccagctccaacagctgagatgaaacgcaaagctgctcatagaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

382

Amino Acids

41.28

Weight (kDa)

8.4

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47500 AT2G47500
fragaria_vesca	FvH4_2g26160 FvH4_2g26160 FvH4_2g26160
malus_domestica	MD00G1140500.v1.1 MD03G1292600.v1.1
prunus_persica	Prupe.8G265600_v2.0.a1 Prupe.8G265600_v2.0.a1
pyrus_communis	pycom03g23180 pycom11g27320
rosa_chinensis	RchiOBHm_Chr5g0061681 RchiOBHm_Chr6g0294551 RchiOBHm_Chr6g0294561
rosa_laevigata	RLG00000003184 RLG00000011860
rosa_multiflora	Rmu_co8460257.1_g000001 Rmu_sc0004268.1_g000003 Rmu_sc0004268.1_g000004 Rmu_sc0042489.1_g000001 Rmu_ssc0000248.1_g000004
rosa_roxburghii	Rroxscaffold_3G00250060 Rroxscaffold_7G00173230 Rroxscaffold_7G00197400
rosa_rugosa	Rorug06G0246000
rosa_samantha	Rh6AG358300 Rh6BG365000 Rh6BG365100 Rh6CG372100 Rh6DG358900 Rh7DG248300
rosa_wichuraiana	Rw6G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	857
AcoI	YGGCCR	2 cut(s)	366, 631
AcsI	RAATTY	2 cut(s)	598, 804
AcuI	CTGAAG	1 cut(s)	891
AfaI	GTAC	3 cut(s)	162, 250, 472
AfiI	CCNNNNNNNGG	4 cut(s)	404, 734, 1043, 1073
AflII	CTTAAG	2 cut(s)	154, 254
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	4 cut(s)	25, 934, 1033, 1072
AjnI	CCWGG	2 cut(s)	368, 628
AleI	CACNNNNGTG	1 cut(s)	36
AlwI	GGATC	1 cut(s)	857
AoxI	GGCC	4 cut(s)	366, 611, 631, 1045
ApaI	GGGCCC	1 cut(s)	1049
ApeKI	GCWGC	7 cut(s)	116, 293, 359, 408, 890, 1099, 1133
ApoI	RAATTY	2 cut(s)	598, 804
AspS9I	GGNCC	3 cut(s)	612, 1045, 1046
AsuHPI	GGTGA	6 cut(s)	165, 248, 438, 594, 683, 706
BaeGI	GKGCMC	1 cut(s)	1049
BalI	TGGCCA	2 cut(s)	368, 633
BanII	GRGCYC	2 cut(s)	668, 1049
BbvI	GCAGC	7 cut(s)	128, 280, 371, 420, 877, 1111, 1120
BccI	CCATC	3 cut(s)	106, 305, 471
BceAI	ACGGC	1 cut(s)	979
BciT130I	CCWGG	2 cut(s)	370, 630
BfaI	CTAG	4 cut(s)	404, 593, 861, 897
BfrI	CTTAAG	2 cut(s)	154, 254
BisI	GCNGC	7 cut(s)	117, 294, 360, 409, 891, 1100, 1134
BlsI	GCNGC	7 cut(s)	118, 295, 361, 410, 892, 1101, 1135
Bme1390I	CCNGG	2 cut(s)	370, 630
BmgT120I	GGNCC	3 cut(s)	612, 1045, 1046
BmiI	GGNNCC	2 cut(s)	614, 1047
BmrFI	CCNGG	2 cut(s)	370, 630
BmrI	ACTGGG	2 cut(s)	611, 685
BmsI	GCATC	4 cut(s)	191, 217, 757, 877
BmuI	ACTGGG	2 cut(s)	611, 685
Bpu10I	CCTNAGC	4 cut(s)	9, 190, 219, 667
BsaJI	CCNNGG	3 cut(s)	554, 608, 729
Bsc4I	CCNNNNNNNGG	4 cut(s)	404, 734, 1043, 1073
Bse1I	ACTGG	4 cut(s)	369, 617, 680, 1001
BseBI	CCWGG	2 cut(s)	370, 630
BseDI	CCNNGG	3 cut(s)	554, 608, 729
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	4 cut(s)	404, 734, 1043, 1073
BseMII	CTCAG	4 cut(s)	204, 210, 681, 1107
BseNI	ACTGG	4 cut(s)	369, 617, 680, 1001
BseSI	GKGCMC	1 cut(s)	1049
BseXI	GCAGC	7 cut(s)	128, 280, 371, 420, 877, 1111, 1120
BseYI	CCCAGC	1 cut(s)	738
BsgI	GTGCAG	2 cut(s)	78, 336
BshFI	GGCC	4 cut(s)	368, 613, 633, 1047
BsiSI	CCGG	1 cut(s)	502
BslI	CCNNNNNNNGG	4 cut(s)	404, 734, 1043, 1073
BsnI	GGCC	4 cut(s)	368, 613, 633, 1047
Bsp120I	GGGCCC	1 cut(s)	1045
Bsp1286I	GDGCHC	2 cut(s)	668, 1049
Bsp143I	GATC	1 cut(s)	849
Bsp19I	CCATGG	1 cut(s)	608
BspANI	GGCC	4 cut(s)	368, 613, 633, 1047
BspCNI	CTCAG	4 cut(s)	203, 211, 680, 1108
BspLI	GGNNCC	2 cut(s)	614, 1047
BspPI	GGATC	1 cut(s)	857
BspTI	CTTAAG	2 cut(s)	154, 254
BsrI	ACTGG	4 cut(s)	369, 617, 680, 1001
BssECI	CCNNGG	3 cut(s)	554, 608, 729
BssMI	GATC	1 cut(s)	849
BssT1I	CCWWGG	3 cut(s)	554, 608, 729
Bst2UI	CCWGG	2 cut(s)	370, 630
Bst4CI	ACNGT	3 cut(s)	133, 280, 492
Bst6I	CTCTTC	2 cut(s)	372, 456
BstAFI	CTTAAG	2 cut(s)	154, 254
BstC8I	GCNNGC	3 cut(s)	841, 1025, 1104
BstDEI	CTNAG	7 cut(s)	9, 190, 219, 353, 667, 1019, 1116
BstDSI	CCRYGG	1 cut(s)	608
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	652
BstKTI	GATC	1 cut(s)	852
BstMBI	GATC	1 cut(s)	849
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 919, 1112
BstNI	CCWGG	2 cut(s)	370, 630
BstNSI	RCATGY	1 cut(s)	832
BstSCI	CCNGG	2 cut(s)	368, 628
BstSLI	GKGCMC	1 cut(s)	1049
BstV1I	GCAGC	7 cut(s)	128, 280, 371, 420, 877, 1111, 1120
BstXI	CCANNNNNNTGG	1 cut(s)	641
BsuRI	GGCC	4 cut(s)	368, 613, 633, 1047
BtgI	CCRYGG	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	652
BtsIMutI	CAGTG	2 cut(s)	362, 859
Cac8I	GCNNGC	3 cut(s)	841, 1025, 1104
Cfr13I	GGNCC	3 cut(s)	612, 1045, 1046
Csp6I	GTAC	3 cut(s)	161, 249, 471
CviAII	CATG	4 cut(s)	481, 609, 661, 829
CviQI	GTAC	3 cut(s)	161, 249, 471
DdeI	CTNAG	7 cut(s)	9, 190, 219, 353, 667, 1019, 1116
DpnI	GATC	1 cut(s)	851
DpnII	GATC	1 cut(s)	849
EaeI	YGGCCR	2 cut(s)	366, 631
Eam1104I	CTCTTC	2 cut(s)	372, 456
EarI	CTCTTC	2 cut(s)	372, 456
Eco130I	CCWWGG	3 cut(s)	554, 608, 729
Eco24I	GRGCYC	2 cut(s)	668, 1049
Eco57I	CTGAAG	1 cut(s)	891
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	1046
EcoRII	CCWGG	2 cut(s)	368, 628
EcoT14I	CCWWGG	3 cut(s)	554, 608, 729
EcoT38I	GRGCYC	2 cut(s)	668, 1049
ErhI	CCWWGG	3 cut(s)	554, 608, 729
FaeI	CATG	4 cut(s)	484, 612, 664, 832
FatI	CATG	4 cut(s)	480, 608, 660, 828
Fnu4HI	GCNGC	7 cut(s)	117, 294, 360, 409, 891, 1100, 1134
FokI	GGATG	1 cut(s)	659
FriOI	GRGCYC	2 cut(s)	668, 1049
Fsp4HI	GCNGC	7 cut(s)	117, 294, 360, 409, 891, 1100, 1134
FspBI	CTAG	4 cut(s)	404, 593, 861, 897
GluI	GCNGC	7 cut(s)	117, 294, 360, 409, 891, 1100, 1134
GsaI	CCCAGC	1 cut(s)	742
HaeIII	GGCC	4 cut(s)	368, 613, 633, 1047
HapII	CCGG	1 cut(s)	502
Hin1II	CATG	4 cut(s)	484, 612, 664, 832
HinfI	GANTC	6 cut(s)	4, 625, 637, 794, 902, 1033
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	6 cut(s)	165, 248, 438, 594, 683, 706
Hpy166II	GTNNAC	8 cut(s)	64, 108, 161, 208, 251, 304, 697, 834
Hpy188I	TCNGA	4 cut(s)	415, 459, 766, 910
Hpy188III	TCNNGA	1 cut(s)	812
Hpy8I	GTNNAC	8 cut(s)	64, 108, 161, 208, 251, 304, 697, 834
HpyAV	CCTTC	3 cut(s)	1047, 1059, 1065
HpyCH4III	ACNGT	3 cut(s)	133, 280, 492
HpyCH4V	TGCA	2 cut(s)	95, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 919, 1112
HpyF3I	CTNAG	7 cut(s)	9, 190, 219, 353, 667, 1019, 1116
Hsp92II	CATG	4 cut(s)	484, 612, 664, 832
Kzo9I	GATC	1 cut(s)	849
LmnI	GCTCC	2 cut(s)	743, 1111
Lsp1109I	GCAGC	7 cut(s)	128, 280, 371, 420, 877, 1111, 1120
LweI	GCATC	4 cut(s)	191, 217, 757, 877
MaeI	CTAG	4 cut(s)	404, 593, 861, 897
MaeIII	GTNAC	3 cut(s)	38, 444, 671
MalI	GATC	1 cut(s)	851
MboI	GATC	1 cut(s)	849
MboII	GAAGA	5 cut(s)	37, 389, 443, 789, 897
MhlI	GDGCHC	2 cut(s)	668, 1049
MlsI	TGGCCA	2 cut(s)	368, 633
MluCI	AATT	4 cut(s)	440, 598, 804, 929
MluNI	TGGCCA	2 cut(s)	368, 633
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	2 cut(s)	700, 1133
MnlI	CCTC	5 cut(s)	373, 459, 465, 615, 728
Mox20I	TGGCCA	2 cut(s)	368, 633
MscI	TGGCCA	2 cut(s)	368, 633
MseI	TTAA	3 cut(s)	155, 255, 621
MslI	CAYNNNNRTG	2 cut(s)	36, 607
Msp20I	TGGCCA	2 cut(s)	368, 633
MspA1I	CMGCKG	1 cut(s)	1115
MspCI	CTTAAG	2 cut(s)	154, 254
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	370, 630
MvaI	CCWGG	2 cut(s)	370, 630
MwoI	GCNNNNNNNGC	3 cut(s)	365, 919, 1112
NcoI	CCATGG	1 cut(s)	608
NdeII	GATC	1 cut(s)	849
NlaIII	CATG	4 cut(s)	484, 612, 664, 832
NlaIV	GGNNCC	2 cut(s)	614, 1047
NmuCI	GTSAC	3 cut(s)	38, 444, 671
NspI	RCATGY	1 cut(s)	832
OliI	CACNNNNGTG	1 cut(s)	36
PciI	ACATGT	1 cut(s)	828
PfeI	GAWTC	5 cut(s)	4, 637, 794, 902, 1033
PflFI	GACNNNGTC	1 cut(s)	677
PkrI	GCNGC	7 cut(s)	118, 295, 361, 410, 892, 1101, 1135
PleI	GAGTC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	633
PscI	ACATGT	1 cut(s)	828
Psp6I	CCWGG	2 cut(s)	368, 628
PspFI	CCCAGC	1 cut(s)	738
PspGI	CCWGG	2 cut(s)	368, 628
PspN4I	GGNNCC	2 cut(s)	614, 1047
PspOMI	GGGCCC	1 cut(s)	1045
PspPI	GGNCC	3 cut(s)	612, 1045, 1046
PsyI	GACNNNGTC	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	1115
RsaI	GTAC	3 cut(s)	162, 250, 472
RsaNI	GTAC	3 cut(s)	161, 249, 471
RseI	CAYNNNNRTG	2 cut(s)	36, 607
SaqAI	TTAA	3 cut(s)	155, 255, 621
SatI	GCNGC	7 cut(s)	117, 294, 360, 409, 891, 1100, 1134
Sau3AI	GATC	1 cut(s)	849
Sau96I	GGNCC	3 cut(s)	612, 1045, 1046
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	2 cut(s)	370, 630
SduI	GDGCHC	2 cut(s)	668, 1049
SfaNI	GCATC	4 cut(s)	191, 217, 757, 877
SmiMI	CAYNNNNRTG	2 cut(s)	36, 607
SmlI	CTYRAG	2 cut(s)	154, 254
SmoI	CTYRAG	2 cut(s)	154, 254
Sse9I	AATT	4 cut(s)	440, 598, 804, 929
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	4 cut(s)	404, 593, 861, 897
StyD4I	CCNGG	2 cut(s)	368, 628
StyI	CCWWGG	3 cut(s)	554, 608, 729
TaaI	ACNGT	3 cut(s)	133, 280, 492
TaqI	TCGA	2 cut(s)	47, 681
TasI	AATT	4 cut(s)	440, 598, 804, 929
TatI	WGTACW	2 cut(s)	160, 248
TfiI	GAWTC	5 cut(s)	4, 637, 794, 902, 1033
Tru1I	TTAA	3 cut(s)	155, 255, 621
Tru9I	TTAA	3 cut(s)	155, 255, 621
TscAI	CASTG	2 cut(s)	369, 859
TseFI	GTSAC	3 cut(s)	38, 444, 671
TseI	GCWGC	7 cut(s)	116, 293, 359, 408, 890, 1099, 1133
Tsp45I	GTSAC	3 cut(s)	38, 444, 671
TspDTI	ATGAA	2 cut(s)	527, 1136
TspGWI	ACGGA	1 cut(s)	1075
TspRI	CASTG	2 cut(s)	369, 859
Tth111I	GACNNNGTC	1 cut(s)	677
Vha464I	CTTAAG	2 cut(s)	154, 254
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	2 cut(s)	598, 804
XceI	RCATGY	1 cut(s)	832
XcmI	CCANNNNNNNNNTGG	1 cut(s)	921
XspI	CTAG	4 cut(s)	404, 593, 861, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.