Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Forward (+)

28480597 .. 28480945

Gene Structure 349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24277

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTGCAATTCCAAGTCCCAGAATCTGTCTGCGCAGAACATCCAACTTCGCCGAATTACTGGGAGTTACTCAGATCGAATCAGACAACGAACCTTATATCAATGGAAAGCTACGGATGTCTACTTTCTGTTGAATTTTACGGATCTTAATTTCGATACTTCTAGAGAAAGTTATGATTATTTGAGTGAAGATAGGTCAGACAGGAAATCTGCTCGGGAATTTACAACCATTCATGGAGAACTCAAGTTCCATGGCACAAGATGGTCAATCCTAATGTTTCAAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

11.44

Weight (kDa)

9.25

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	133, 218
AgsI	TTSAA	2 cut(s)	133, 281
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AlwI	GGATC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	213
ApoI	RAATTY	2 cut(s)	133, 218
AspLEI	GCGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	213
BccI	CCATC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	39, 121
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	73, 142
Bsp19I	CCATGG	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	73, 142
BssT1I	CCWWGG	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	39, 121
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	76, 145
BstMBI	GATC	2 cut(s)	73, 142
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	39, 121
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	34
CviAII	CATG	2 cut(s)	233, 251
CviJI	RGCY	1 cut(s)	110
CviKI_1	RGCY	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	2 cut(s)	75, 144
DpnII	GATC	2 cut(s)	73, 142
Eco130I	CCWWGG	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	2 cut(s)	236, 254
FaiI	YATR	4 cut(s)	97, 174, 234, 252
FatI	CATG	2 cut(s)	232, 250
FblI	GTMKAC	1 cut(s)	120
FokI	GGATG	2 cut(s)	26, 128
FspBI	CTAG	1 cut(s)	162
FspI	TGCGCA	1 cut(s)	33
GlaI	GCGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	236, 254
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	22, 78
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	73, 83, 199
Hpy188III	TCNNGA	2 cut(s)	162, 215
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	6
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	236, 254
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	73, 142
LpnPI	CCDG	3 cut(s)	32, 45, 187
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	75, 144
MboI	GATC	2 cut(s)	73, 142
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	5 cut(s)	7, 54, 133, 148, 218
MmeI	TCCRAC	1 cut(s)	67
MseI	TTAA	2 cut(s)	147, 289
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	2 cut(s)	73, 142
NlaIII	CATG	2 cut(s)	236, 254
NsbI	TGCGCA	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	22, 78
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	147, 289
Sau3AI	GATC	2 cut(s)	73, 142
SetI	ASST	3 cut(s)	95, 112, 197
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	7, 54, 133, 148, 218
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	250
TaqI	TCGA	2 cut(s)	76, 153
TasI	AATT	5 cut(s)	7, 54, 133, 148, 218
TfiI	GAWTC	2 cut(s)	22, 78
Tru1I	TTAA	2 cut(s)	147, 289
Tru9I	TTAA	2 cut(s)	147, 289
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	2 cut(s)	128, 155
XapI	RAATTY	2 cut(s)	133, 218
XbaI	TCTAGA	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.