Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Reverse (-)

88434448 .. 88448109

Gene Structure 13662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG576200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTTTCCCTGGGTATTATTCTGAGCAAGTATACCACTCCAACACATATTCAATGTCCGAAAATAATTCATATTCATGGGATGATCATTCATGGCCACAACAAGAACCATCTAATAGCAATTTGGGATGGGGAGATCATTCTAACAACTCATGGTCTGAAAATCCATATTATGAAACCGCACAATGGTCATATCCATCTAGCAATTTCCCATCATCTTATCCAGCTCCAATTTATCAACAAGAAGATCCTACTGTTAAGGAGATGGTGGTTGAGCTATTCAAGAGATCAGAAAAATTTGATCACGAGGTTGAAAGGCTTAAACATGATCAATCAAAGCTTGAAGAAAGGCAATCCAAGCTTGCACAAGCACTATTGGAAATTGAACTTCATATATCACAGCTTGCTAATGCTTGGGAGTTAGAGGACGAAAGGCATGCTAGTGGAAGAGAAGAAAATTTTGATCGTAAGCCCGATGAGGAAGATGACTATTTTGAGCTACATATTATTGATGATCAAGCTACCGAGAGCACATATCTTCCTTCTTCTATTAAAGTTCCTATGGAGTTGTGCGCTGACAAGCAAGAGAATGAAGAACCAAAGGATGAAATTATTTTTGAAAAAGTTGTGAGAACTCATACATCGGATGCTCTTGATGAATTCACCACTATGGTAGTTGATGCACCAAATTTTCAAGCATCCATGGAGCACCAAATTTGCGAATCGTTCCTTTCTTTACCTTCCAAGCTTGTTCTTTCCATTATTCCAGCTCCAAAACTTGAACTCATCATGGCTACTGATGGGAAGGTTATTGTTTCATCATCGACAGCTCCAGTTGAACCAGACCCAGCAGCTCCAATTGTACCAACAGCTCCAATTCTTGAAATTTGCAGCTATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

34.36

Weight (kDa)

4.4

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	6 cut(s)	296, 457, 659, 688, 714, 885
AfaI	GTAC	1 cut(s)	864
AfiI	CCNNNNNNNGG	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	10
Alw21I	GWGCWC	2 cut(s)	533, 711
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	851, 891
ApoI	RAATTY	6 cut(s)	296, 457, 659, 688, 714, 885
AspLEI	GCGC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	655
BalI	TGGCCA	1 cut(s)	97
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	2 cut(s)	533, 711
BbvI	GCAGC	1 cut(s)	863
BccI	CCATC	6 cut(s)	118, 123, 205, 220, 259, 794
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	12
BclI	TGATCA	4 cut(s)	85, 301, 328, 514
BfaI	CTAG	2 cut(s)	201, 441
BisI	GCNGC	2 cut(s)	852, 892
BlsI	GCNGC	2 cut(s)	853, 893
Bme1390I	CCNGG	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	3 cut(s)	637, 670, 707
BpmI	CTGGAG	1 cut(s)	816
BsaJI	CCNNGG	3 cut(s)	10, 11, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	833
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	10, 11, 702
BseGI	GGATG	5 cut(s)	88, 134, 610, 652, 698
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	833
BseXI	GCAGC	1 cut(s)	863
BseYI	CCCAGC	1 cut(s)	847
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	2 cut(s)	533, 711
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	533, 711
Bsp143I	GATC	8 cut(s)	85, 136, 247, 287, 301, 328, 463, 514
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	16
BspPI	GGATC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	833
BssECI	CCNNGG	3 cut(s)	10, 11, 702
BssMI	GATC	8 cut(s)	85, 136, 247, 287, 301, 328, 463, 514
BssNAI	GTATAC	1 cut(s)	34
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	702
Bst1107I	GTATAC	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	363, 405, 438
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	5 cut(s)	88, 134, 610, 652, 698
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	8 cut(s)	88, 139, 250, 290, 304, 331, 466, 517
BstMBI	GATC	8 cut(s)	85, 136, 247, 287, 301, 328, 463, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	863
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BstZ17I	GTATAC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	5 cut(s)	88, 134, 610, 652, 698
Cac8I	GCNNGC	3 cut(s)	363, 405, 438
CfoI	GCGC	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	863
CviAII	CATG	7 cut(s)	78, 93, 153, 326, 437, 703, 790
CviQI	GTAC	1 cut(s)	863
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	8 cut(s)	87, 138, 249, 289, 303, 330, 465, 516
DpnII	GATC	8 cut(s)	85, 136, 247, 287, 301, 328, 463, 514
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	702
EcoRI	GAATTC	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	7 cut(s)	81, 96, 156, 329, 440, 706, 793
FatI	CATG	7 cut(s)	77, 92, 152, 325, 436, 702, 789
FbaI	TGATCA	4 cut(s)	85, 301, 328, 514
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	852, 892
FokI	GGATG	5 cut(s)	95, 141, 617, 659, 685
Fsp4HI	GCNGC	2 cut(s)	852, 892
FspBI	CTAG	2 cut(s)	201, 441
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	2 cut(s)	852, 892
GsaI	CCCAGC	1 cut(s)	851
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	7 cut(s)	81, 96, 156, 329, 440, 706, 793
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HindIII	AAGCTT	3 cut(s)	338, 359, 746
HinfI	GANTC	1 cut(s)	722
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	25, 61, 160, 292, 646
Hpy188III	TCNNGA	4 cut(s)	283, 305, 653, 881
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	552, 750, 799
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	365, 683, 891
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	7 cut(s)	81, 96, 156, 329, 440, 706, 793
HspAI	GCGC	1 cut(s)	573
Ksp22I	TGATCA	4 cut(s)	85, 301, 328, 514
Kzo9I	GATC	8 cut(s)	85, 136, 247, 287, 301, 328, 463, 514
LmnI	GCTCC	6 cut(s)	232, 706, 775, 835, 859, 877
LpnPI	CCDG	6 cut(s)	24, 237, 780, 846, 855, 861
Lsp1109I	GCAGC	1 cut(s)	863
LweI	GCATC	3 cut(s)	637, 670, 707
MaeI	CTAG	2 cut(s)	201, 441
MalI	GATC	8 cut(s)	87, 138, 249, 289, 303, 330, 465, 516
MboI	GATC	8 cut(s)	85, 136, 247, 287, 301, 328, 463, 514
MboII	GAAGA	8 cut(s)	257, 356, 459, 464, 494, 530, 537, 605
MfeI	CAATTG	1 cut(s)	858
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	533, 711
MlsI	TGGCCA	1 cut(s)	97
MluNI	TGGCCA	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	301, 418, 472
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	3 cut(s)	258, 321, 552
MslI	CAYNNNNRTG	3 cut(s)	76, 441, 668
Msp20I	TGGCCA	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	358
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	8 cut(s)	85, 136, 247, 287, 301, 328, 463, 514
NlaIII	CATG	7 cut(s)	81, 96, 156, 329, 440, 706, 793
NspI	RCATGY	1 cut(s)	440
PaeI	GCATGC	1 cut(s)	440
PasI	CCCWGGG	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	722
PkrI	GCNGC	2 cut(s)	853, 893
Psp6I	CCWGG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	847
PspGI	CCWGG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	864
RsaNI	GTAC	1 cut(s)	863
RseI	CAYNNNNRTG	3 cut(s)	76, 441, 668
SaqAI	TTAA	3 cut(s)	258, 321, 552
SatI	GCNGC	2 cut(s)	852, 892
Sau3AI	GATC	8 cut(s)	85, 136, 247, 287, 301, 328, 463, 514
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	2 cut(s)	533, 711
SfaNI	GCATC	3 cut(s)	637, 670, 707
SmiMI	CAYNNNNRTG	3 cut(s)	76, 441, 668
SphI	GCATGC	1 cut(s)	440
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	2 cut(s)	201, 441
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	824
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	3 cut(s)	258, 321, 552
Tru9I	TTAA	3 cut(s)	258, 321, 552
TseI	GCWGC	2 cut(s)	851, 891
TspDTI	ATGAA	9 cut(s)	60, 66, 81, 189, 380, 606, 621, 672, 807
XapI	RAATTY	6 cut(s)	296, 457, 659, 688, 714, 885
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	2 cut(s)	201, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.