Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Forward (+)

35100325 .. 35103892

Gene Structure 3568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG322600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTTTCCCTGGGTATTATTCCGAGCAAGTATACCACTCCAACACATATTCAATGTCCGAAAATAATTCATATTCATGGGATGATCATTCATGGCCACAACAAGAACCATCTAATAGCAATTTGGGATGGAGAGATCATTCTAACAACTCATGGTCTGAAAATCCATATTACGAAACCGCACAATGGTCATATCCATCTAGCAATTTCCCATCATCTTATCCAGCTCCAATTTATCAACAAGAAGATCCTACTGTTAAGGAGATGGTGGTTGAGCTATTCAAGAGATCAGAAAAATTTGTTCACGAGGTTGAAAGGCTTAAACATGATCAATCAAAGCTTGAAGAAAGGCAATCCAAGCTTGCACAAGCACTATTGGAAATTGAATTTCATATATCGCAGCTTGCTAATGCTTGGGAGTTAGAGGACGAAAGGCATGCTAGTGGAAGAGAAGAAAATTTTGATCGTAAGCCCGATGAGGAAGATGACTATTTTGAGCTAAATATTATTGATGATCAAGCTACCGAGAGCACCTATCTTCCTTCTTCTACTAAAGTTCCTATGGAGCTATGTGCTAACAAGCCAAAGAATGAAGAACCTGAATTCAAAGACGTGAGATCTCATACATCGGATGCTCTTGATGAAGTCACCACTGTGGTAGTTGATGCACCAAATTTTCAAGCATTTGTGGAGCACCAAATTTGCGAAGTTTTCCCTTCTTTACCCTCCGAGCTCGTTCTTCCCATTATTCCAGCTCCAAGACTTGAGCTCATATGTGCTCTCAAGCCTCCCTCAAATTCTAAGGATGAGTTCCTCCCACAATCACTTCAACCTCCTTGGCCACCTCCTCTGCAATTGATGATGCTCTACTTAAAGTCTAATGCAAGAAATCGGGAACAGCCGAAAAAGAAAAAGATAAAAAGGTGGGAGCGTTGCAGATTTAAGAAAAGCGATTGGAGAATTGGAAATTCTCGTATAAGTAGGCTGTTTGCTGCTGGGATCTCAAGGAAGCTACTATTTTGGATATTTTGGGCATCTCGGATAAAAAAAAAAAAAAAAATCAGTTTTCACAGTGACATTTGGGTTCTGCTAACTTGCAGCAGAAGTGTCCGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

43.74

Weight (kDa)

5.89

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	242, 1007
AcoI	YGGCCR	2 cut(s)	95, 839
AcsI	RAATTY	8 cut(s)	296, 386, 457, 602, 673, 699, 796, 967
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	8 cut(s)	54, 283, 314, 344, 386, 607, 680, 830
AjiI	CACGTC	1 cut(s)	613
AjnI	CCWGG	1 cut(s)	10
AleI	CACNNNNGTG	1 cut(s)	653
Alw21I	GWGCWC	5 cut(s)	533, 696, 735, 771, 781
AlwI	GGATC	2 cut(s)	242, 1007
AoxI	GGCC	2 cut(s)	95, 839
ApeKI	GCWGC	3 cut(s)	400, 992, 1098
ApoI	RAATTY	8 cut(s)	296, 386, 457, 602, 673, 699, 796, 967
AsuHPI	GGTGA	1 cut(s)	640
BalI	TGGCCA	2 cut(s)	97, 841
BanII	GRGCYC	2 cut(s)	735, 771
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	5 cut(s)	533, 696, 735, 771, 781
BbvI	GCAGC	3 cut(s)	412, 979, 1110
BccI	CCATC	5 cut(s)	118, 123, 205, 220, 259
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	12
BclI	TGATCA	3 cut(s)	85, 328, 514
BfaI	CTAG	2 cut(s)	201, 441
BglII	AGATCT	1 cut(s)	617
BisI	GCNGC	3 cut(s)	401, 993, 1099
BlsI	GCNGC	3 cut(s)	402, 994, 1100
Bme1390I	CCNGG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	613
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	4 cut(s)	622, 655, 852, 1043
BpuEI	CTTGAG	3 cut(s)	767, 785, 988
BsaJI	CCNNGG	3 cut(s)	10, 11, 836
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	10, 11, 836
BseGI	GGATG	4 cut(s)	88, 134, 637, 811
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	837
BseXI	GCAGC	3 cut(s)	412, 979, 1110
BseYI	CCCAGC	1 cut(s)	995
BshFI	GGCC	2 cut(s)	97, 841
BsiHKAI	GWGCWC	5 cut(s)	533, 696, 735, 771, 781
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	2 cut(s)	97, 841
Bsp1286I	GDGCHC	5 cut(s)	533, 696, 735, 771, 781
Bsp143I	GATC	9 cut(s)	85, 136, 247, 287, 328, 463, 514, 617, 999
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	97, 841
BspPI	GGATC	2 cut(s)	242, 1007
BssECI	CCNNGG	3 cut(s)	10, 11, 836
BssMI	GATC	9 cut(s)	85, 136, 247, 287, 328, 463, 514, 617, 999
BssNAI	GTATAC	1 cut(s)	34
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	836
Bst1107I	GTATAC	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	256, 655, 1073
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	363, 405, 438
BstDEI	CTNAG	1 cut(s)	801
BstF5I	GGATG	4 cut(s)	88, 134, 637, 811
BstKTI	GATC	9 cut(s)	88, 139, 250, 290, 331, 466, 517, 620, 1002
BstMBI	GATC	9 cut(s)	85, 136, 247, 287, 328, 463, 514, 617, 999
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	412, 979, 1110
BstX2I	RGATCY	3 cut(s)	247, 617, 999
BstYI	RGATCY	3 cut(s)	247, 617, 999
BstZ17I	GTATAC	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	97, 841
BtrI	CACGTC	1 cut(s)	613
BtsCI	GGATG	4 cut(s)	88, 134, 637, 811
BtsIMutI	CAGTG	2 cut(s)	651, 1078
Cac8I	GCNNGC	3 cut(s)	363, 405, 438
CviAII	CATG	5 cut(s)	78, 93, 153, 326, 437
DdeI	CTNAG	1 cut(s)	801
DpnI	GATC	9 cut(s)	87, 138, 249, 289, 330, 465, 516, 619, 1001
DpnII	GATC	9 cut(s)	85, 136, 247, 287, 328, 463, 514, 617, 999
EaeI	YGGCCR	2 cut(s)	95, 839
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Ecl136II	GAGCTC	2 cut(s)	733, 769
Eco130I	CCWWGG	1 cut(s)	836
Eco24I	GRGCYC	2 cut(s)	735, 771
Eco53kI	GAGCTC	2 cut(s)	733, 769
EcoICRI	GAGCTC	2 cut(s)	733, 769
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	836
EcoT38I	GRGCYC	2 cut(s)	735, 771
ErhI	CCWWGG	1 cut(s)	836
FaeI	CATG	5 cut(s)	81, 96, 156, 329, 440
FatI	CATG	5 cut(s)	77, 92, 152, 325, 436
FauNDI	CATATG	1 cut(s)	773
FbaI	TGATCA	3 cut(s)	85, 328, 514
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	401, 993, 1099
FokI	GGATG	4 cut(s)	95, 141, 644, 818
FriOI	GRGCYC	2 cut(s)	735, 771
Fsp4HI	GCNGC	3 cut(s)	401, 993, 1099
FspBI	CTAG	2 cut(s)	201, 441
GluI	GCNGC	3 cut(s)	401, 993, 1099
GsaI	CCCAGC	1 cut(s)	999
HaeIII	GGCC	2 cut(s)	97, 841
Hin1II	CATG	5 cut(s)	81, 96, 156, 329, 440
HindIII	AAGCTT	2 cut(s)	338, 359
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	2 cut(s)	34, 304
Hpy188I	TCNGA	7 cut(s)	25, 61, 160, 292, 631, 730, 1041
Hpy188III	TCNNGA	4 cut(s)	283, 305, 638, 893
Hpy8I	GTNNAC	2 cut(s)	34, 304
HpyAV	CCTTC	2 cut(s)	552, 726
HpyCH4III	ACNGT	3 cut(s)	256, 655, 1073
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	6 cut(s)	365, 668, 853, 884, 936, 1098
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	801
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	5 cut(s)	81, 96, 156, 329, 440
Ksp22I	TGATCA	3 cut(s)	85, 328, 514
Kzo9I	GATC	9 cut(s)	85, 136, 247, 287, 328, 463, 514, 617, 999
LmnI	GCTCC	5 cut(s)	232, 565, 691, 760, 928
LpnPI	CCDG	5 cut(s)	24, 237, 612, 765, 981
Lsp1109I	GCAGC	3 cut(s)	412, 979, 1110
LweI	GCATC	4 cut(s)	622, 655, 852, 1043
MaeI	CTAG	2 cut(s)	201, 441
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	2 cut(s)	646, 1073
MalI	GATC	9 cut(s)	87, 138, 249, 289, 330, 465, 516, 619, 1001
MboI	GATC	9 cut(s)	85, 136, 247, 287, 328, 463, 514, 617, 999
MboII	GAAGA	9 cut(s)	257, 356, 459, 464, 494, 530, 537, 605, 731
MfeI	CAATTG	1 cut(s)	854
MflI	RGATCY	3 cut(s)	247, 617, 999
MhlI	GDGCHC	5 cut(s)	533, 696, 735, 771, 781
MlsI	TGGCCA	2 cut(s)	97, 841
MluNI	TGGCCA	2 cut(s)	97, 841
MmeI	TCCRAC	1 cut(s)	66
Mox20I	TGGCCA	2 cut(s)	97, 841
MscI	TGGCCA	2 cut(s)	97, 841
MseI	TTAA	4 cut(s)	258, 321, 872, 942
MslI	CAYNNNNRTG	3 cut(s)	76, 441, 653
Msp20I	TGGCCA	2 cut(s)	97, 841
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	854
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeI	CATATG	1 cut(s)	773
NdeII	GATC	9 cut(s)	85, 136, 247, 287, 328, 463, 514, 617, 999
NlaIII	CATG	5 cut(s)	81, 96, 156, 329, 440
NmuCI	GTSAC	2 cut(s)	646, 1073
NspI	RCATGY	1 cut(s)	440
OliI	CACNNNNGTG	1 cut(s)	653
PaeI	GCATGC	1 cut(s)	440
PasI	CCCWGGG	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	402, 994, 1100
Psp124BI	GAGCTC	2 cut(s)	735, 771
Psp6I	CCWGG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	995
PspGI	CCWGG	1 cut(s)	10
PsuI	RGATCY	3 cut(s)	247, 617, 999
RseI	CAYNNNNRTG	3 cut(s)	76, 441, 653
SacI	GAGCTC	2 cut(s)	735, 771
SaqAI	TTAA	4 cut(s)	258, 321, 872, 942
SatI	GCNGC	3 cut(s)	401, 993, 1099
Sau3AI	GATC	9 cut(s)	85, 136, 247, 287, 328, 463, 514, 617, 999
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	5 cut(s)	533, 696, 735, 771, 781
SfaNI	GCATC	4 cut(s)	622, 655, 852, 1043
SmiMI	CAYNNNNRTG	3 cut(s)	76, 441, 653
SmlI	CTYRAG	3 cut(s)	764, 782, 1003
SmoI	CTYRAG	3 cut(s)	764, 782, 1003
SphI	GCATGC	1 cut(s)	440
SsiI	CCGC	1 cut(s)	180
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	2 cut(s)	201, 441
SstI	GAGCTC	2 cut(s)	735, 771
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	836
TaaI	ACNGT	3 cut(s)	256, 655, 1073
TaiI	ACGT	1 cut(s)	615
Tru1I	TTAA	4 cut(s)	258, 321, 872, 942
Tru9I	TTAA	4 cut(s)	258, 321, 872, 942
TscAI	CASTG	2 cut(s)	658, 1078
TseFI	GTSAC	2 cut(s)	646, 1073
TseI	GCWGC	3 cut(s)	400, 992, 1098
Tsp45I	GTSAC	2 cut(s)	646, 1073
TspDTI	ATGAA	6 cut(s)	60, 66, 81, 380, 606, 657
TspGWI	ACGGA	1 cut(s)	1100
TspRI	CASTG	2 cut(s)	658, 1078
XapI	RAATTY	8 cut(s)	296, 386, 457, 602, 673, 699, 796, 967
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	2 cut(s)	201, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.