Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Reverse (-)

48667075 .. 48667693

Gene Structure 619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCCTTTCCAGCTTACTATTCCGAGCTAGCATATAACAACACACATTCAAGGGTTGGTGACAATCCATGCTCATGGGATGTACCTTCATGGCCACAAGAAGAACCTTATTCCTACAATTTGCAATGGGGAAATTGCAGTGACTTCTCATGGTTCAACAGTCAAAGTTACGAAGCTACACAATGGCCACGCCAAGCTGGCAACATTCCATCATCCTATGAAATCTTGATCGAGCCAAAGCAGCCATCACTTGAGGAGACATTACAAGAACTGATGCAAATTAATGTTATTAATCAACAAATGCTTCAAGACATTCAACAGACTTGCCCATCTATGCCCATTGAGCCAAAGAAGCCAACCCTTGAGGAAACCGAGGCAACAACTCGCACAAAATCAGATGGAGCAATTTATGAGACAAACAAAGAGCAAAAAGTAATTGCTGAAGCCATAGCCAAGTTGGAGGTACAAGTCGGTCACATTGCAGCTGCTTTGAATAAAGAAGAGGAAGGAAGAGTTCCCAGTCAAATAATTCCTCATCCAATGGAAGAATTTGAATTCATCTCCCCACAATCATGTTCAATACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.21

Weight (kDa)

4.45

Isoelectric Point (pI)

69.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	92, 185
AcsI	RAATTY	2 cut(s)	548, 554
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	2 cut(s)	84, 465
AgsI	TTSAA	7 cut(s)	51, 157, 308, 317, 493, 554, 579
AluBI	AGCT	5 cut(s)	14, 28, 176, 197, 485
AluI	AGCT	5 cut(s)	14, 28, 176, 197, 485
Alw26I	GTCTC	2 cut(s)	251, 407
AoxI	GGCC	3 cut(s)	3, 92, 185
ApeKI	GCWGC	3 cut(s)	241, 482, 485
ApoI	RAATTY	2 cut(s)	548, 554
AseI	ATTAAT	2 cut(s)	282, 291
AsuHPI	GGTGA	1 cut(s)	71
AsuNHI	GCTAGC	1 cut(s)	28
BalI	TGGCCA	2 cut(s)	94, 187
BbvI	GCAGC	3 cut(s)	253, 472, 494
BccI	CCATC	4 cut(s)	217, 253, 337, 392
BcoDI	GTCTC	2 cut(s)	251, 407
BfaI	CTAG	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	3 cut(s)	242, 483, 486
BlsI	GCNGC	3 cut(s)	243, 484, 487
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	264
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	513
BpuEI	CTTGAG	2 cut(s)	272, 383
BsaJI	CCNNGG	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	2 cut(s)	131, 477
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	3 cut(s)	85, 212, 535
BseMI	GCAATG	2 cut(s)	131, 477
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	253, 472, 494
BshFI	GGCC	3 cut(s)	5, 94, 187
BsmAI	GTCTC	2 cut(s)	251, 407
BsnI	GGCC	3 cut(s)	5, 94, 187
Bsp143I	GATC	1 cut(s)	228
BspANI	GGCC	3 cut(s)	5, 94, 187
BspOI	GCTAGC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	131, 477
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	2 cut(s)	495, 505
BstC8I	GCNNGC	2 cut(s)	30, 199
BstF5I	GGATG	3 cut(s)	85, 212, 535
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	2 cut(s)	251, 407
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 198, 241, 343, 352
BstV1I	GCAGC	3 cut(s)	253, 472, 494
BstXI	CCANNNNNNTGG	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	5, 94, 187
BtsCI	GGATG	3 cut(s)	85, 212, 535
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	30, 199
Csp6I	GTAC	2 cut(s)	83, 464
CviAII	CATG	6 cut(s)	69, 75, 90, 150, 573, 585
CviQI	GTAC	2 cut(s)	83, 464
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
EaeI	YGGCCR	2 cut(s)	92, 185
Eam1104I	CTCTTC	2 cut(s)	495, 505
EarI	CTCTTC	2 cut(s)	495, 505
Eco57I	CTGAAG	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	554
FaeI	CATG	6 cut(s)	72, 78, 93, 153, 576, 588
FatI	CATG	6 cut(s)	68, 74, 89, 149, 572, 584
Fnu4HI	GCNGC	3 cut(s)	242, 483, 486
FokI	GGATG	3 cut(s)	92, 199, 522
Fsp4HI	GCNGC	3 cut(s)	242, 483, 486
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	3 cut(s)	242, 483, 486
HaeIII	GGCC	3 cut(s)	5, 94, 187
Hin1II	CATG	6 cut(s)	72, 78, 93, 153, 576, 588
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	25, 397
Hpy188III	TCNNGA	2 cut(s)	226, 308
HpyAV	CCTTC	2 cut(s)	96, 500
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	4 cut(s)	124, 138, 277, 482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 198, 241, 343, 352
Hsp92II	CATG	6 cut(s)	72, 78, 93, 153, 576, 588
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	3 cut(s)	24, 183, 532
Lsp1109I	GCAGC	3 cut(s)	253, 472, 494
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	4 cut(s)	59, 140, 167, 473
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	4 cut(s)	113, 512, 522, 557
MlsI	TGGCCA	2 cut(s)	94, 187
MluCI	AATT	8 cut(s)	118, 133, 279, 405, 435, 528, 548, 554
MluNI	TGGCCA	2 cut(s)	94, 187
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	6 cut(s)	247, 358, 367, 454, 496, 543
Mox20I	TGGCCA	2 cut(s)	94, 187
MscI	TGGCCA	2 cut(s)	94, 187
MseI	TTAA	2 cut(s)	282, 291
MslI	CAYNNNNRTG	2 cut(s)	73, 571
Msp20I	TGGCCA	2 cut(s)	94, 187
MspA1I	CMGCKG	1 cut(s)	485
MwoI	GCNNNNNNNGC	5 cut(s)	11, 198, 241, 343, 352
NdeII	GATC	1 cut(s)	228
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	6 cut(s)	72, 78, 93, 153, 576, 588
NmuCI	GTSAC	3 cut(s)	59, 140, 473
PkrI	GCNGC	3 cut(s)	243, 484, 487
PshBI	ATTAAT	2 cut(s)	282, 291
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	84, 465
RsaNI	GTAC	2 cut(s)	83, 464
RseI	CAYNNNNRTG	2 cut(s)	73, 571
SaqAI	TTAA	2 cut(s)	282, 291
SatI	GCNGC	3 cut(s)	242, 483, 486
Sau3AI	GATC	1 cut(s)	228
SetI	ASST	8 cut(s)	16, 30, 88, 109, 178, 199, 465, 487
SfaNI	GCATC	1 cut(s)	264
SmiMI	CAYNNNNRTG	2 cut(s)	73, 571
SmlI	CTYRAG	2 cut(s)	251, 362
SmoI	CTYRAG	2 cut(s)	251, 362
Sse9I	AATT	8 cut(s)	118, 133, 279, 405, 435, 528, 548, 554
SspMI	CTAG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	231
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	8 cut(s)	118, 133, 279, 405, 435, 528, 548, 554
Tru1I	TTAA	2 cut(s)	282, 291
Tru9I	TTAA	2 cut(s)	282, 291
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	3 cut(s)	59, 140, 473
TseI	GCWGC	3 cut(s)	241, 482, 485
Tsp45I	GTSAC	3 cut(s)	59, 140, 473
TspDTI	ATGAA	3 cut(s)	78, 234, 547
TspRI	CASTG	1 cut(s)	145
VspI	ATTAAT	2 cut(s)	282, 291
XapI	RAATTY	2 cut(s)	548, 554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.