Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Reverse (-)

43034639 .. 43044917

Gene Structure 10279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00249380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTAGATCTTGGCGATGCAAGTTGGGTTAGCACAGATCGTCGCGGCGGGGACGTGGTGACGTCGGTAGGGGAAGCGGGGTGTGGCGGCTCGAATCGATTGCGGGATTCTCCAACTAGGATTGAAGGCAATGTGCAATCCCAATTATTGGAAAAGTACCGCATCGAATCGACAATGAGCCTTATATGCATGGAAAGCTACGAATGTCTACTTATGGATCTCAATGTCGATACTTTTAGAGAAAGCTATGATTTTTTGAGTGAAGATAGGCCGGACAGAAACTTGCTCGGGATTTTACAAACATTTGTGGAGAACTCAAGTTCGTGGCACAAGATCATCAATCCTAATATTTCAAGGAAATCAGTAGAGAAGCTGGTAGTGTTTCTCATATGTATAGATTCTCTTGAGATCAGTAGAGAAGCTGTAATAGAGATGCTATCCAACTCTAGGGCTTCACTTCCTATCATATTCCTGGTTAATGATGGGGCAGTTGAAGATGAGAGACAAATATGCGATGAGATAAAAAAAGTGTCTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA_3

Protein Analysis

180

Amino Acids

20.24

Weight (kDa)

4.65

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	208
AccII	CGCG	1 cut(s)	45
AciI	CCGC	6 cut(s)	45, 48, 77, 87, 103, 160
AclWI	GGATC	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	148, 447
AgsI	TTSAA	3 cut(s)	125, 354, 494
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	4 cut(s)	198, 246, 373, 422
AluI	AGCT	4 cut(s)	198, 246, 373, 422
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	287
BccI	CCATC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	3 cut(s)	5, 117, 447
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	2 cut(s)	46, 88
BlsI	GCNGC	2 cut(s)	47, 89
Bme1390I	CCNGG	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	287
BmgBI	CACGTC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	3 cut(s)	7, 171, 423
BpuEI	CTTGAG	2 cut(s)	301, 425
Bsa29I	ATCGAT	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 447
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	473
BseCI	ATCGAT	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	148, 447
BseMI	GCAATG	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	271
BshVI	ATCGAT	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	148, 447
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	287
Bsp143I	GATC	5 cut(s)	7, 37, 217, 333, 408
BspACI	CCGC	6 cut(s)	45, 48, 77, 87, 103, 160
BspANI	GGCC	1 cut(s)	271
BspDI	ATCGAT	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	45
BspPI	GGATC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	136
BssMI	GATC	5 cut(s)	7, 37, 217, 333, 408
BssNI	GRCGYC	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	473
BstACI	GRCGYC	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	5 cut(s)	10, 40, 220, 336, 411
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	5 cut(s)	7, 37, 217, 333, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 195
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	7, 217
BstYI	RGATCY	2 cut(s)	7, 217
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	271
BsuTUI	ATCGAT	1 cut(s)	97
BtgZI	GCGATG	2 cut(s)	30, 528
BtrI	CACGTC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	8 cut(s)	90, 180, 198, 246, 271, 373, 422, 452
CviKI_1	RGCY	8 cut(s)	90, 180, 198, 246, 271, 373, 422, 452
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	5 cut(s)	9, 39, 219, 335, 410
DpnII	GATC	5 cut(s)	7, 37, 217, 333, 408
Eco88I	CYCGRG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	471
EcoT22I	ATGCAT	1 cut(s)	191
FaeI	CATG	1 cut(s)	193
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	1 cut(s)	189
FauI	CCCGC	3 cut(s)	41, 70, 96
FauNDI	CATATG	1 cut(s)	389
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	46, 88
Fsp4HI	GCNGC	2 cut(s)	46, 88
FspBI	CTAG	3 cut(s)	5, 117, 447
GluI	GCNGC	2 cut(s)	46, 88
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	193
HinfI	GANTC	4 cut(s)	94, 107, 167, 398
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188III	TCNNGA	2 cut(s)	289, 404
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	2 cut(s)	45, 67
HpyAV	CCTTC	1 cut(s)	119
HpyCH4IV	ACGT	2 cut(s)	54, 62
HpyCH4V	TGCA	4 cut(s)	20, 136, 189, 537
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 195
HpySE526I	ACGT	2 cut(s)	54, 62
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	7, 37, 217, 333, 408
LpnPI	CCDG	4 cut(s)	285, 359, 458, 485
LweI	GCATC	3 cut(s)	7, 171, 423
MaeI	CTAG	3 cut(s)	5, 117, 447
MaeII	ACGT	2 cut(s)	54, 62
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	5 cut(s)	9, 39, 219, 335, 410
MboI	GATC	5 cut(s)	7, 37, 217, 333, 408
MboII	GAAGA	2 cut(s)	275, 506
MflI	RGATCY	2 cut(s)	7, 217
MluCI	AATT	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	137, 465
Mph1103I	ATGCAT	1 cut(s)	191
MseI	TTAA	1 cut(s)	477
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	473
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	186, 195
NdeI	CATATG	1 cut(s)	389
NdeII	GATC	5 cut(s)	7, 37, 217, 333, 408
NlaIII	CATG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	191
PfeI	GAWTC	4 cut(s)	94, 107, 167, 398
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	47, 89
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PsuI	RGATCY	2 cut(s)	7, 217
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	2 cut(s)	46, 88
Sau3AI	GATC	5 cut(s)	7, 37, 217, 333, 408
ScrFI	CCNGG	1 cut(s)	473
SetI	ASST	6 cut(s)	57, 65, 200, 248, 375, 424
SfaNI	GCATC	3 cut(s)	7, 171, 423
SmlI	CTYRAG	2 cut(s)	316, 404
SmoI	CTYRAG	2 cut(s)	316, 404
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	6 cut(s)	45, 48, 77, 87, 103, 160
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	3 cut(s)	5, 117, 447
StyD4I	CCNGG	1 cut(s)	471
TaiI	ACGT	2 cut(s)	57, 65
TaqI	TCGA	5 cut(s)	92, 97, 165, 170, 228
TasI	AATT	1 cut(s)	143
TauI	GCSGC	2 cut(s)	48, 90
TfiI	GAWTC	4 cut(s)	94, 107, 167, 398
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	208
XspI	CTAG	3 cut(s)	5, 117, 447
ZraI	GACGTC	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.