Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Reverse (-)

78050123 .. 78062593

Gene Structure 12471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGATCTCGATTTTGATACTTCTGGAGAAAGTTATGATTATTTGAGTGAAGATAGGTTAGACAGGAAATCTGCTCGAAAATTTATAACCATTCATGGAGAACTCAAGTTTCGTGGCACAAGAACGAAGGATCGCTTCCTAGGCATCTCATGCCATCGGGAGGGACTACCACCCGATGACGCATCGGAAGGGACTGCCAACCGGAGTAGGAGGTGGTGGTTAGATGGGACTCGCCAACTAGCCACAAGTAGTAGACGGGACTCGCCGACTAACTACCTCATGTCATCCGGAAGGGACTACCAACCAGATGACGCATCGGATGGGACTGCCAACCGAGCCGTAGTCCGGACGGGACCGCCGACCCAAACCAACACCAAAGAAACGTTATTGACGTCGAGAGAAAGCTTCGATATAGCTCCGACACCACGAAGGGGCCGAATCGAAGGGAAGAGAACTCGACCATTCCGGTTTCCGTGTGCGTGGCCGAAAACTGGAGTTGCGATCGGGAGGAGGAAAACAAGGCCAAAGAGTAGAGAGGAGGAAGAGGAAGAAGAGGGATCGACGAGAGCCAACAAAGTGTTCTCCGAAGAGTCGACCAGCCTCCCGGACAGAAGTTCGGCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.57

Weight (kDa)

9.35

Isoelectric Point (pI)

66.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AatII	GACGTC	1 cut(s)	395
AccI	GTMKAC	2 cut(s)	253, 593
AccIII	TCCGGA	2 cut(s)	287, 345
AciI	CCGC	1 cut(s)	356
AclI	AACGTT	1 cut(s)	383
AclWI	GGATC	3 cut(s)	12, 138, 565
AcoI	YGGCCR	2 cut(s)	482, 618
AcsI	RAATTY	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	392
AfiI	CCNNNNNNNGG	4 cut(s)	160, 345, 431, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AluBI	AGCT	2 cut(s)	405, 416
AluI	AGCT	2 cut(s)	405, 416
AlwI	GGATC	3 cut(s)	12, 138, 565
Aor13HI	TCCGGA	2 cut(s)	287, 345
AoxI	GGCC	4 cut(s)	433, 482, 521, 618
ApoI	RAATTY	1 cut(s)	80
AspA2I	CCTAGG	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	353, 433
AsuC2I	CCSGG	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	353
AvrII	CCTAGG	1 cut(s)	139
BccI	CCATC	3 cut(s)	162, 218, 314
BceAI	ACGGC	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	605
BfaI	CTAG	2 cut(s)	140, 239
BlnI	CCTAGG	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	353, 433
BmiI	GGNNCC	2 cut(s)	354, 434
BmrFI	CCNGG	1 cut(s)	605
BmsI	GCATC	3 cut(s)	153, 191, 323
BpmI	CTGGAG	2 cut(s)	45, 513
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	605
BsaHI	GRCGYC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	4 cut(s)	201, 287, 345, 465
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 345, 431, 491
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	1 cut(s)	496
BseAI	TCCGGA	2 cut(s)	287, 345
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	284, 325
BseLI	CCNNNNNNNGG	4 cut(s)	160, 345, 431, 491
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	2 cut(s)	523, 551
BseX3I	CGGCCG	1 cut(s)	618
Bsh1285I	CGRYCG	2 cut(s)	504, 621
BshFI	GGCC	4 cut(s)	435, 484, 523, 620
BsiEI	CGRYCG	2 cut(s)	504, 621
BsiSI	CCGG	6 cut(s)	202, 288, 346, 466, 605, 621
BslFI	GGGAC	7 cut(s)	177, 205, 241, 272, 308, 337, 366
BslI	CCNNNNNNNGG	4 cut(s)	160, 345, 431, 491
BsmFI	GGGAC	7 cut(s)	177, 205, 241, 272, 308, 337, 366
BsnI	GGCC	4 cut(s)	435, 484, 523, 620
Bsp13I	TCCGGA	2 cut(s)	287, 345
Bsp143I	GATC	4 cut(s)	4, 130, 501, 557
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	4 cut(s)	435, 484, 523, 620
BspEI	TCCGGA	2 cut(s)	287, 345
BspLI	GGNNCC	2 cut(s)	354, 434
BspPI	GGATC	3 cut(s)	12, 138, 565
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	1 cut(s)	496
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	4 cut(s)	4, 130, 501, 557
BssNI	GRCGYC	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	139
Bst6I	CTCTTC	4 cut(s)	443, 537, 546, 582
BstACI	GRCGYC	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	284, 325
BstKTI	GATC	4 cut(s)	7, 133, 504, 560
BstMBI	GATC	4 cut(s)	4, 130, 501, 557
BstMCI	CGRYCG	2 cut(s)	504, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 150, 335
BstSCI	CCNGG	1 cut(s)	603
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	618
BsuRI	GGCC	4 cut(s)	435, 484, 523, 620
BtsCI	GGATG	2 cut(s)	284, 325
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	2 cut(s)	353, 433
CseI	GACGC	2 cut(s)	188, 320
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	3 cut(s)	95, 150, 280
DpnI	GATC	4 cut(s)	6, 132, 503, 559
DpnII	GATC	4 cut(s)	4, 130, 501, 557
EaeI	YGGCCR	2 cut(s)	482, 618
EagI	CGGCCG	1 cut(s)	618
Eam1104I	CTCTTC	4 cut(s)	443, 537, 546, 582
EarI	CTCTTC	4 cut(s)	443, 537, 546, 582
EclXI	CGGCCG	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	353
Eco52I	CGGCCG	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	3 cut(s)	98, 153, 283
FaiI	YATR	6 cut(s)	36, 86, 96, 151, 281, 413
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	7 cut(s)	177, 205, 241, 272, 308, 337, 366
FatI	CATG	3 cut(s)	94, 149, 279
FblI	GTMKAC	2 cut(s)	253, 593
FokI	GGATG	2 cut(s)	271, 332
FspBI	CTAG	2 cut(s)	140, 239
GsuI	CTGGAG	2 cut(s)	45, 513
HaeIII	GGCC	4 cut(s)	435, 484, 523, 620
HapII	CCGG	6 cut(s)	202, 288, 346, 466, 605, 621
HgaI	GACGC	2 cut(s)	188, 320
Hin1I	GRCGYC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	98, 153, 283
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	4 cut(s)	229, 260, 438, 590
HpaII	CCGG	6 cut(s)	202, 288, 346, 466, 605, 621
Hpy166II	GTNNAC	2 cut(s)	254, 594
Hpy188I	TCNGA	4 cut(s)	187, 319, 420, 586
Hpy188III	TCNNGA	7 cut(s)	8, 24, 158, 288, 346, 396, 505
Hpy8I	GTNNAC	2 cut(s)	254, 594
Hpy99I	CGWCG	2 cut(s)	397, 565
HpyAV	CCTTC	5 cut(s)	121, 182, 285, 423, 437
HpyCH4IV	ACGT	2 cut(s)	383, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 150, 335
HpySE526I	ACGT	2 cut(s)	383, 392
Hsp92I	GRCGYC	1 cut(s)	392
Hsp92II	CATG	3 cut(s)	98, 153, 283
Kpn2I	TCCGGA	2 cut(s)	287, 345
Kzo9I	GATC	4 cut(s)	4, 130, 501, 557
LmnI	GCTCC	1 cut(s)	421
LweI	GCATC	3 cut(s)	153, 191, 323
MaeI	CTAG	2 cut(s)	140, 239
MaeII	ACGT	2 cut(s)	383, 392
MalI	GATC	4 cut(s)	6, 132, 503, 559
MboI	GATC	4 cut(s)	4, 130, 501, 557
MboII	GAAGA	6 cut(s)	62, 460, 554, 560, 563, 599
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	80
MlyI	GAGTC	3 cut(s)	223, 254, 599
MmeI	TCCRAC	1 cut(s)	443
MroI	TCCGGA	2 cut(s)	287, 345
MspI	CCGG	6 cut(s)	202, 288, 346, 466, 605, 621
MspR9I	CCNGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	3 cut(s)	141, 150, 335
NciI	CCSGG	1 cut(s)	605
NdeII	GATC	4 cut(s)	4, 130, 501, 557
NlaIII	CATG	3 cut(s)	98, 153, 283
NlaIV	GGNNCC	2 cut(s)	354, 434
PcsI	WCGNNNNNNNCGW	3 cut(s)	356, 389, 433
PfeI	GAWTC	1 cut(s)	438
PfoI	TCCNGGA	1 cut(s)	603
Ple19I	CGATCG	1 cut(s)	504
PleI	GAGTC	3 cut(s)	223, 254, 598
PpsI	GAGTC	3 cut(s)	223, 254, 598
PsiI	TTATAA	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	354, 434
PspPI	GGNCC	2 cut(s)	353, 433
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	504
SalI	GTCGAC	1 cut(s)	592
Sau3AI	GATC	4 cut(s)	4, 130, 501, 557
Sau96I	GGNCC	2 cut(s)	353, 433
SchI	GAGTC	3 cut(s)	223, 254, 599
ScrFI	CCNGG	1 cut(s)	605
SetI	ASST	7 cut(s)	59, 215, 279, 386, 395, 407, 418
SfaNI	GCATC	3 cut(s)	153, 191, 323
SinI	GGWCC	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	2 cut(s)	140, 239
StyD4I	CCNGG	1 cut(s)	603
StyI	CCWWGG	1 cut(s)	139
TaiI	ACGT	2 cut(s)	386, 395
TaqI	TCGA	8 cut(s)	9, 76, 395, 408, 441, 457, 560, 593
TasI	AATT	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	438
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	80
XmaJI	CCTAGG	1 cut(s)	139
XmiI	GTMKAC	2 cut(s)	253, 593
XspI	CTAG	2 cut(s)	140, 239
ZraI	GACGTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.