Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Reverse (-)

29416224 .. 29437779

Gene Structure 21556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG307100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCTTTCCCTGGGTATTATTCCGAGCAAGTGTACAACTGCAACACATATTCAATGTCTGGAAATAATTCATATTCATGGGATGCTCCTCCATGGCCAAAACAAGAACCATATAATTGCAACTTGGGATGGGGAGATCATTCCAACTACTCATGGTCTGAAAATTCAGATTATGAAACTGCACAGTGGTCGTATCACTCTAGCAATGTCCTATCATCCTATCAAACTCCAATCTATTTGCAAGAAGATCCTACTATAAAGGAGATGGTAGTTGAACTATTGAAGAGATCAGAAAAGTTTGATCAAGAGGTTGCAATTCTTAAACAGGATCAATCAAAGCTTGAAGAAAGGCAATCAAAACTTGCACAAACGTTATCGGACATTGAACTTCAAATTTTGCGGCTTGCTAATGCCTGGGAGGAAGAGGACGTAATGCTTCCTACTAAACCAGAAGAAAGATTTGATTTTCAGCTCGATGAGGAAGATGAATATTTTGAACCATACATGAAAAGAAAAATCATTGATGATCAAGCTACTGAGAGCACTCATCCTCCTTCTACTAATGTTCCTATGGAGTTGTGCGCTGACAAGCAAGAGAATGAAGAACCAAAGGATGAAATTATTTTTGAAAAAATTGTGAGAACTCATACATCGGATGGTCTTGATGAAGTCACCACTATGACCATTTTGATTGGGAATGTGCTAGCTGCGGGTTATGGTTTGCCACAAAGTGAGGCTGATACTAGCCCGCTTGGCATTCTGGCTTTGCCTGCTATTCAGAAAAAAGCTCAAACAACCAGTGGATTGTCGAAAGATGACTCGGATGATGCTGACTTGGAAGGAGTAGACATTGAAATTACTGAGAATATGGATCCCACTGATGTGAAGCGCGCGAGAAGATACAAGTACTTTAAGAATCTTTCTCTAGATGTGTTCTTTGACTGCTTTTTGGTTTGCCTAAGAACAATGTGTTCCGAGGTTAAGGACGCTGCTTCAATTGCGGTGAGGAGATTGTATGCCAGGGCATCTCATGATTTGGTGCCACAAGCGATTTTAGCTACCCAGAGTCTCATTCAGCTTGATAACAGGGAGCGTGAGGCAGCCAAAGCTGCGGTGGCGGCTGCTGCTAATTCATCTTCTAACTCCCTTATATTGCATTCCATGCCATTACGTCACTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

394

Amino Acids

44.8

Weight (kDa)

4.58

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1039
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	2 cut(s)	891, 893
AciI	CCGC	6 cut(s)	400, 710, 749, 1001, 1112, 1118
AclI	AACGTT	1 cut(s)	371
AclWI	GGATC	4 cut(s)	242, 336, 866, 879
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	163, 393
AdeI	CACNNNGTG	1 cut(s)	731
AfaI	GTAC	2 cut(s)	35, 908
AjnI	CCWGG	3 cut(s)	10, 413, 1019
AleI	CACNNNNGTG	1 cut(s)	881
AluBI	AGCT	8 cut(s)	340, 472, 533, 707, 788, 1058, 1078, 1109
AluI	AGCT	8 cut(s)	340, 472, 533, 707, 788, 1058, 1078, 1109
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	1 cut(s)	1073
AlwI	GGATC	4 cut(s)	242, 336, 866, 879
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	6 cut(s)	707, 989, 1100, 1109, 1121, 1124
ApoI	RAATTY	2 cut(s)	163, 393
Asp700I	GAANNNNTTC	1 cut(s)	67
AspLEI	GCGC	3 cut(s)	584, 891, 893
AsuHPI	GGTGA	2 cut(s)	664, 1015
AsuNHI	GCTAGC	1 cut(s)	703
BalI	TGGCCA	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	871
BanI	GGYRCC	1 cut(s)	1039
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	6 cut(s)	694, 976, 1096, 1108, 1111, 1112
BccI	CCATC	3 cut(s)	123, 259, 650
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciT130I	CCWGG	3 cut(s)	12, 415, 1021
BclI	TGATCA	2 cut(s)	301, 526
BcoDI	GTCTC	1 cut(s)	1073
BfaI	CTAG	4 cut(s)	201, 704, 744, 926
BglI	GCCNNNNNGGC	1 cut(s)	753
BisI	GCNGC	8 cut(s)	401, 708, 990, 1101, 1110, 1119, 1122, 1125
BlsI	GCNGC	8 cut(s)	402, 709, 991, 1102, 1111, 1120, 1123, 1126
BmcAI	AGTACT	1 cut(s)	908
Bme1390I	CCNGG	3 cut(s)	12, 415, 1021
BmiI	GGNNCC	2 cut(s)	873, 1041
BmrFI	CCNGG	3 cut(s)	12, 415, 1021
BmsI	GCATC	3 cut(s)	73, 817, 1034
BmtI	GCTAGC	1 cut(s)	707
BsaJI	CCNNGG	6 cut(s)	10, 11, 92, 414, 975, 1020
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bse1I	ACTGG	1 cut(s)	798
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	3 cut(s)	12, 415, 1021
BseDI	CCNNGG	6 cut(s)	10, 11, 92, 414, 975, 1020
BseGI	GGATG	7 cut(s)	88, 134, 215, 547, 619, 661, 829
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	528, 852
BseNI	ACTGG	1 cut(s)	798
BsePI	GCGCGC	1 cut(s)	889
BseRI	GAGGAG	2 cut(s)	78, 1021
BseXI	GCAGC	6 cut(s)	694, 976, 1096, 1108, 1111, 1112
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	2 cut(s)	891, 893
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	1039
BsiHKAI	GWGCWC	1 cut(s)	545
BsmAI	GTCTC	1 cut(s)	1073
BsmI	GAATGC	2 cut(s)	756, 1156
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	7 cut(s)	136, 247, 287, 301, 328, 526, 871
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	6 cut(s)	400, 710, 749, 1001, 1112, 1118
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	529, 853
BspFNI	CGCG	2 cut(s)	891, 893
BspHI	TCATGA	1 cut(s)	1030
BspLI	GGNNCC	2 cut(s)	873, 1041
BspOI	GCTAGC	1 cut(s)	707
BspPI	GGATC	4 cut(s)	242, 336, 866, 879
BspT107I	GGYRCC	1 cut(s)	1039
BsrDI	GCAATG	1 cut(s)	211
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	798
BssECI	CCNNGG	6 cut(s)	10, 11, 92, 414, 975, 1020
BssHII	GCGCGC	1 cut(s)	889
BssMI	GATC	7 cut(s)	136, 247, 287, 301, 328, 526, 871
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	3 cut(s)	12, 415, 1021
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	2 cut(s)	278, 417
BstAPI	GCANNNNNTGC	1 cut(s)	1162
BstAUI	TGTACA	1 cut(s)	33
BstC8I	GCNNGC	5 cut(s)	405, 705, 749, 771, 891
BstDEI	CTNAG	3 cut(s)	537, 861, 959
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	7 cut(s)	88, 134, 215, 547, 619, 661, 829
BstFNI	CGCG	2 cut(s)	891, 893
BstHHI	GCGC	3 cut(s)	584, 891, 893
BstKTI	GATC	7 cut(s)	139, 250, 290, 304, 331, 529, 874
BstMAI	GTCTC	1 cut(s)	1073
BstMBI	GATC	7 cut(s)	136, 247, 287, 301, 328, 526, 871
BstNI	CCWGG	3 cut(s)	12, 415, 1021
BstSCI	CCNGG	3 cut(s)	10, 413, 1019
BstUI	CGCG	2 cut(s)	891, 893
BstV1I	GCAGC	6 cut(s)	694, 976, 1096, 1108, 1111, 1112
BstX2I	RGATCY	2 cut(s)	247, 871
BstYI	RGATCY	2 cut(s)	247, 871
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	7 cut(s)	88, 134, 215, 547, 619, 661, 829
BtsIMutI	CAGTG	3 cut(s)	191, 805, 876
Cac8I	GCNNGC	5 cut(s)	405, 705, 749, 771, 891
CciI	TCATGA	1 cut(s)	1030
CfoI	GCGC	3 cut(s)	584, 891, 893
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	2 cut(s)	34, 907
CviAII	CATG	6 cut(s)	78, 93, 153, 505, 1031, 1162
CviQI	GTAC	2 cut(s)	34, 907
DdeI	CTNAG	3 cut(s)	537, 861, 959
DpnI	GATC	7 cut(s)	138, 249, 289, 303, 330, 528, 873
DpnII	GATC	7 cut(s)	136, 247, 287, 301, 328, 526, 871
DraIII	CACNNNGTG	1 cut(s)	731
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	278, 417
EarI	CTCTTC	2 cut(s)	278, 417
Eco130I	CCWWGG	1 cut(s)	92
EcoRII	CCWGG	3 cut(s)	10, 413, 1019
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	6 cut(s)	81, 96, 156, 508, 1034, 1165
FatI	CATG	6 cut(s)	77, 92, 152, 504, 1030, 1161
FauI	CCCGC	2 cut(s)	703, 756
FbaI	TGATCA	2 cut(s)	301, 526
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	8 cut(s)	401, 708, 990, 1101, 1110, 1119, 1122, 1125
FokI	GGATG	7 cut(s)	95, 141, 202, 534, 626, 668, 836
Fsp4HI	GCNGC	8 cut(s)	401, 708, 990, 1101, 1110, 1119, 1122, 1125
FspBI	CTAG	4 cut(s)	201, 704, 744, 926
GlaI	GCGC	3 cut(s)	583, 890, 892
GluI	GCNGC	8 cut(s)	401, 708, 990, 1101, 1110, 1119, 1122, 1125
HaeIII	GGCC	1 cut(s)	97
HgaI	GACGC	1 cut(s)	995
HhaI	GCGC	3 cut(s)	584, 891, 893
Hin1II	CATG	6 cut(s)	81, 96, 156, 508, 1034, 1165
Hin6I	GCGC	3 cut(s)	582, 889, 891
HinP1I	GCGC	3 cut(s)	582, 889, 891
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	3 cut(s)	818, 916, 1066
HphI	GGTGA	2 cut(s)	664, 1015
Hpy166II	GTNNAC	2 cut(s)	34, 847
Hpy188I	TCNGA	9 cut(s)	25, 160, 169, 292, 379, 655, 780, 823, 976
Hpy188III	TCNNGA	5 cut(s)	60, 305, 662, 926, 1031
Hpy8I	GTNNAC	2 cut(s)	34, 847
HpyAV	CCTTC	2 cut(s)	564, 833
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	3 cut(s)	371, 429, 1171
HpyCH4V	TGCA	7 cut(s)	42, 120, 182, 241, 314, 365, 1156
HpyF3I	CTNAG	3 cut(s)	537, 861, 959
HpySE526I	ACGT	3 cut(s)	371, 429, 1171
Hsp92II	CATG	6 cut(s)	81, 96, 156, 508, 1034, 1165
HspAI	GCGC	3 cut(s)	582, 889, 891
Ksp22I	TGATCA	2 cut(s)	301, 526
Kzo9I	GATC	7 cut(s)	136, 247, 287, 301, 328, 526, 871
LmnI	GCTCC	2 cut(s)	91, 1090
Lsp1109I	GCAGC	6 cut(s)	694, 976, 1096, 1108, 1111, 1112
LweI	GCATC	3 cut(s)	73, 817, 1034
MaeI	CTAG	4 cut(s)	201, 704, 744, 926
MaeII	ACGT	3 cut(s)	371, 429, 1171
MaeIII	GTNAC	2 cut(s)	670, 1172
MalI	GATC	7 cut(s)	138, 249, 289, 303, 330, 528, 873
MboI	GATC	7 cut(s)	136, 247, 287, 301, 328, 526, 871
MboII	GAAGA	9 cut(s)	257, 295, 356, 434, 464, 494, 614, 909, 1128
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	2 cut(s)	247, 871
MhlI	GDGCHC	1 cut(s)	545
MlsI	TGGCCA	1 cut(s)	97
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	812, 1075
MmeI	TCCRAC	1 cut(s)	168
Mox20I	TGGCCA	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	4 cut(s)	321, 912, 981, 1183
MslI	CAYNNNNRTG	3 cut(s)	76, 677, 881
Msp20I	TGGCCA	1 cut(s)	97
MspR9I	CCNGG	3 cut(s)	12, 415, 1021
MunI	CAATTG	1 cut(s)	996
Mva1269I	GAATGC	2 cut(s)	756, 1156
MvaI	CCWGG	3 cut(s)	12, 415, 1021
MvnI	CGCG	2 cut(s)	891, 893
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	7 cut(s)	136, 247, 287, 301, 328, 526, 871
NheI	GCTAGC	1 cut(s)	703
NlaIII	CATG	6 cut(s)	81, 96, 156, 508, 1034, 1165
NlaIV	GGNNCC	2 cut(s)	873, 1041
NmuCI	GTSAC	2 cut(s)	670, 1172
OliI	CACNNNNGTG	1 cut(s)	881
PagI	TCATGA	1 cut(s)	1030
PasI	CCCWGGG	1 cut(s)	11
PauI	GCGCGC	1 cut(s)	889
PctI	GAATGC	2 cut(s)	756, 1156
PdmI	GAANNNNTTC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	916
PkrI	GCNGC	8 cut(s)	402, 709, 991, 1102, 1111, 1120, 1123, 1126
PleI	GAGTC	2 cut(s)	812, 1074
PpsI	GAGTC	2 cut(s)	812, 1074
Psp1406I	AACGTT	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	10, 413, 1019
PspGI	CCWGG	3 cut(s)	10, 413, 1019
PspN4I	GGNNCC	2 cut(s)	873, 1041
PsuI	RGATCY	2 cut(s)	247, 871
PteI	GCGCGC	1 cut(s)	889
RsaI	GTAC	2 cut(s)	35, 908
RsaNI	GTAC	2 cut(s)	34, 907
RseI	CAYNNNNRTG	3 cut(s)	76, 677, 881
SaqAI	TTAA	4 cut(s)	321, 912, 981, 1183
SatI	GCNGC	8 cut(s)	401, 708, 990, 1101, 1110, 1119, 1122, 1125
Sau3AI	GATC	7 cut(s)	136, 247, 287, 301, 328, 526, 871
ScaI	AGTACT	1 cut(s)	908
SchI	GAGTC	2 cut(s)	812, 1075
ScrFI	CCNGG	3 cut(s)	12, 415, 1021
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	3 cut(s)	73, 817, 1034
SmiMI	CAYNNNNRTG	3 cut(s)	76, 677, 881
SsiI	CCGC	6 cut(s)	400, 710, 749, 1001, 1112, 1118
SspI	AATATT	1 cut(s)	491
SspMI	CTAG	4 cut(s)	201, 704, 744, 926
StyD4I	CCNGG	3 cut(s)	10, 413, 1019
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	3 cut(s)	374, 432, 1174
TaqI	TCGA	2 cut(s)	474, 809
TatI	WGTACW	2 cut(s)	33, 906
TauI	GCSGC	2 cut(s)	403, 1121
TfiI	GAWTC	1 cut(s)	916
Tru1I	TTAA	4 cut(s)	321, 912, 981, 1183
Tru9I	TTAA	4 cut(s)	321, 912, 981, 1183
TscAI	CASTG	3 cut(s)	191, 805, 883
TseFI	GTSAC	2 cut(s)	670, 1172
TseI	GCWGC	6 cut(s)	707, 989, 1100, 1109, 1121, 1124
Tsp45I	GTSAC	2 cut(s)	670, 1172
TspDTI	ATGAA	9 cut(s)	60, 66, 189, 501, 521, 615, 630, 681, 1122
TspRI	CASTG	3 cut(s)	191, 805, 883
XapI	RAATTY	2 cut(s)	163, 393
XbaI	TCTAGA	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1111
XmiI	GTMKAC	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	4 cut(s)	201, 704, 744, 926
ZrmI	AGTACT	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.