RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591 |
| rosa_laevigata | RLG00000006277 RLG00000008803 |
| rosa_multiflora | Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360 |
| rosa_samantha | Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 50 |
| AcsI | RAATTY | 3 cut(s) | 325, 470, 541 |
| AfaI | GTAC | 1 cut(s) | 64 |
| AgsI | TTSAA | 4 cut(s) | 19, 212, 254, 475 |
| AjiI | CACGTC | 1 cut(s) | 481 |
| AleI | CACNNNNGTG | 2 cut(s) | 521, 524 |
| Alw21I | GWGCWC | 1 cut(s) | 401 |
| Alw26I | GTCTC | 1 cut(s) | 152 |
| ApeKI | GCWGC | 2 cut(s) | 8, 56 |
| ApoI | RAATTY | 3 cut(s) | 325, 470, 541 |
| AsuHPI | GGTGA | 1 cut(s) | 508 |
| Bbv12I | GWGCWC | 1 cut(s) | 401 |
| BbvI | GCAGC | 2 cut(s) | 20, 43 |
| BccI | CCATC | 2 cut(s) | 139, 170 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 287, 321 |
| BclI | TGATCA | 2 cut(s) | 331, 382 |
| BcoDI | GTCTC | 1 cut(s) | 152 |
| BfaI | CTAG | 1 cut(s) | 309 |
| BfmI | CTRYAG | 1 cut(s) | 57 |
| BfuAI | ACCTGC | 1 cut(s) | 50 |
| BglII | AGATCT | 1 cut(s) | 485 |
| BisI | GCNGC | 2 cut(s) | 9, 57 |
| BlsI | GCNGC | 2 cut(s) | 10, 58 |
| BmgBI | CACGTC | 1 cut(s) | 481 |
| BmsI | GCATC | 2 cut(s) | 490, 523 |
| Bpu10I | CCTNAGC | 1 cut(s) | 153 |
| BsaI | GGTCTC | 1 cut(s) | 152 |
| BseGI | GGATG | 1 cut(s) | 505 |
| BseMII | CTCAG | 1 cut(s) | 167 |
| BseXI | GCAGC | 2 cut(s) | 20, 43 |
| BseYI | CCCAGC | 1 cut(s) | 180 |
| BsiHKAI | GWGCWC | 1 cut(s) | 401 |
| BsmAI | GTCTC | 1 cut(s) | 152 |
| Bso31I | GGTCTC | 1 cut(s) | 152 |
| Bsp1286I | GDGCHC | 1 cut(s) | 401 |
| Bsp143I | GATC | 3 cut(s) | 331, 382, 485 |
| BspCNI | CTCAG | 1 cut(s) | 166 |
| BspMAI | CTGCAG | 1 cut(s) | 61 |
| BspMI | ACCTGC | 1 cut(s) | 50 |
| BspTNI | GGTCTC | 1 cut(s) | 152 |
| BssMI | GATC | 3 cut(s) | 331, 382, 485 |
| Bst4CI | ACNGT | 1 cut(s) | 523 |
| Bst6I | CTCTTC | 2 cut(s) | 129, 310 |
| BstC8I | GCNNGC | 3 cut(s) | 54, 231, 306 |
| BstDEI | CTNAG | 1 cut(s) | 153 |
| BstF5I | GGATG | 1 cut(s) | 505 |
| BstKTI | GATC | 3 cut(s) | 334, 385, 488 |
| BstMAI | GTCTC | 1 cut(s) | 152 |
| BstMBI | GATC | 3 cut(s) | 331, 382, 485 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 53, 226 |
| BstNSI | RCATGY | 1 cut(s) | 308 |
| BstSFI | CTRYAG | 1 cut(s) | 57 |
| BstV1I | GCAGC | 2 cut(s) | 20, 43 |
| BstX2I | RGATCY | 1 cut(s) | 485 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 526 |
| BstYI | RGATCY | 1 cut(s) | 485 |
| BtrI | CACGTC | 1 cut(s) | 481 |
| BtsCI | GGATG | 1 cut(s) | 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 519 |
| BveI | ACCTGC | 1 cut(s) | 50 |
| Cac8I | GCNNGC | 3 cut(s) | 54, 231, 306 |
| Csp6I | GTAC | 1 cut(s) | 63 |
| CviAII | CATG | 2 cut(s) | 260, 305 |
| CviQI | GTAC | 1 cut(s) | 63 |
| DdeI | CTNAG | 1 cut(s) | 153 |
| DpnI | GATC | 3 cut(s) | 333, 384, 487 |
| DpnII | GATC | 3 cut(s) | 331, 382, 485 |
| Eam1104I | CTCTTC | 2 cut(s) | 129, 310 |
| EarI | CTCTTC | 2 cut(s) | 129, 310 |
| Eco31I | GGTCTC | 1 cut(s) | 152 |
| EcoRI | GAATTC | 1 cut(s) | 470 |
| FaeI | CATG | 2 cut(s) | 263, 308 |
| FatI | CATG | 2 cut(s) | 259, 304 |
| FauNDI | CATATG | 1 cut(s) | 87 |
| FbaI | TGATCA | 2 cut(s) | 331, 382 |
| Fnu4HI | GCNGC | 2 cut(s) | 9, 57 |
| FokI | GGATG | 1 cut(s) | 512 |
| Fsp4HI | GCNGC | 2 cut(s) | 9, 57 |
| FspBI | CTAG | 1 cut(s) | 309 |
| GluI | GCNGC | 2 cut(s) | 9, 57 |
| GsaI | CCCAGC | 1 cut(s) | 184 |
| Hin1II | CATG | 2 cut(s) | 263, 308 |
| HindIII | AAGCTT | 1 cut(s) | 227 |
| HphI | GGTGA | 1 cut(s) | 508 |
| Hpy188III | TCNNGA | 2 cut(s) | 155, 506 |
| HpyAV | CCTTC | 2 cut(s) | 420, 568 |
| HpyCH4III | ACNGT | 1 cut(s) | 523 |
| HpyCH4IV | ACGT | 1 cut(s) | 480 |
| HpyCH4V | TGCA | 4 cut(s) | 59, 110, 233, 536 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 53, 226 |
| HpyF3I | CTNAG | 1 cut(s) | 153 |
| HpySE526I | ACGT | 1 cut(s) | 480 |
| Hsp92II | CATG | 2 cut(s) | 263, 308 |
| Ksp22I | TGATCA | 2 cut(s) | 331, 382 |
| Kzo9I | GATC | 3 cut(s) | 331, 382, 485 |
| LmnI | GCTCC | 2 cut(s) | 5, 433 |
| LpnPI | CCDG | 7 cut(s) | 33, 38, 45, 85, 140, 166, 480 |
| Lsp1109I | GCAGC | 2 cut(s) | 20, 43 |
| LweI | GCATC | 2 cut(s) | 490, 523 |
| MaeI | CTAG | 1 cut(s) | 309 |
| MaeII | ACGT | 1 cut(s) | 480 |
| MaeIII | GTNAC | 1 cut(s) | 514 |
| MalI | GATC | 3 cut(s) | 333, 384, 487 |
| MboI | GATC | 3 cut(s) | 331, 382, 485 |
| MboII | GAAGA | 9 cut(s) | 146, 224, 327, 332, 362, 398, 405, 473, 573 |
| MflI | RGATCY | 1 cut(s) | 485 |
| MhlI | GDGCHC | 1 cut(s) | 401 |
| MluCI | AATT | 4 cut(s) | 249, 325, 470, 541 |
| MnlI | CCTC | 3 cut(s) | 286, 340, 578 |
| MseI | TTAA | 1 cut(s) | 420 |
| MslI | CAYNNNNRTG | 3 cut(s) | 309, 521, 524 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 53, 226 |
| NdeI | CATATG | 1 cut(s) | 87 |
| NdeII | GATC | 3 cut(s) | 331, 382, 485 |
| NlaIII | CATG | 2 cut(s) | 263, 308 |
| NmuCI | GTSAC | 1 cut(s) | 514 |
| NspI | RCATGY | 1 cut(s) | 308 |
| OliI | CACNNNNGTG | 2 cut(s) | 521, 524 |
| PaeI | GCATGC | 1 cut(s) | 308 |
| PkrI | GCNGC | 2 cut(s) | 10, 58 |
| PspFI | CCCAGC | 1 cut(s) | 180 |
| PstI | CTGCAG | 1 cut(s) | 61 |
| PsuI | RGATCY | 1 cut(s) | 485 |
| RsaI | GTAC | 1 cut(s) | 64 |
| RsaNI | GTAC | 1 cut(s) | 63 |
| RseI | CAYNNNNRTG | 3 cut(s) | 309, 521, 524 |
| SaqAI | TTAA | 1 cut(s) | 420 |
| SatI | GCNGC | 2 cut(s) | 9, 57 |
| Sau3AI | GATC | 3 cut(s) | 331, 382, 485 |
| SduI | GDGCHC | 1 cut(s) | 401 |
| SfaNI | GCATC | 2 cut(s) | 490, 523 |
| SfcI | CTRYAG | 1 cut(s) | 57 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 309, 521, 524 |
| SphI | GCATGC | 1 cut(s) | 308 |
| Sse9I | AATT | 4 cut(s) | 249, 325, 470, 541 |
| SspMI | CTAG | 1 cut(s) | 309 |
| TaaI | ACNGT | 1 cut(s) | 523 |
| TaiI | ACGT | 1 cut(s) | 483 |
| TaqI | TCGA | 2 cut(s) | 165, 342 |
| TasI | AATT | 4 cut(s) | 249, 325, 470, 541 |
| Tru1I | TTAA | 1 cut(s) | 420 |
| Tru9I | TTAA | 1 cut(s) | 420 |
| TscAI | CASTG | 1 cut(s) | 526 |
| TseFI | GTSAC | 1 cut(s) | 514 |
| TseI | GCWGC | 2 cut(s) | 8, 56 |
| Tsp45I | GTSAC | 1 cut(s) | 514 |
| TspDTI | ATGAA | 3 cut(s) | 248, 474, 525 |
| TspRI | CASTG | 1 cut(s) | 526 |
| XapI | RAATTY | 3 cut(s) | 325, 470, 541 |
| XceI | RCATGY | 1 cut(s) | 308 |
| XspI | CTAG | 1 cut(s) | 309 |