Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Reverse (-)

40365896 .. 40367772

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG206200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTTTCCCTGGGTATTATTCCGAGCAAGTATACCACTCCAACACATATTCAATGTCCGAAAATAATTCATATTCATGGGATGATCCTTCATGGCCACAACAAGAACCATCTAATAGCAATTTGGGATGGGGAGATCATTCTAACAACTCATGGTCTGAAAATCCATATTATGAAACCGCACAATGGTCATATCTATCTAGTAATTTCCCATCATCTTATGAAGCTCCAATTTATCAACAAGAAGATCCTACTGTCAAGGAGATGGTGGTTGAGCTATTCAAGAGATCAGAAAAATTTGATCACGAGGTTGAAAGGCTTAAACATGATCAATCAAAGCTTGAAGAAAGGCAATCCAAGCTTGCACAAGCACTATTGGAAATTGAACTTCATATATCGCAGCTTGCTAATGCTTGGGAGTTAGAGGACGAAAGGCATGCTAGTGGAAGAGAAGAAAATTTTGATCATAAGCCCGATGAGGAAGATGACTATTTTGAGCTACATATTATTGATGATCAAGCTACCGAGAGCACCTATCTTCCTTCTTCTACTAAAGTTCCTATGGAGCTATGTGCTAACAAGCCAAAGAATGAAGAAACTGAATTCAAAGACGTGAGATCTCATACATTGGATGCTCTTGATGAAGTCACCACTGTGGTGGTTGATGCACCAAATTTTCAAGCATCTGCGGAGTACCAAATTTGCGAAGTTTTCCCTTCTTTACCCTCCAAGCTCGTTCTTCCCATTATTCCAGCTCCAAGACTTGAGCTCATCTATGTTTTCAAGCCTCCCTCAAATTCTAAGGATGAGTTCCTCCCACAATCACTTCAACCTCTTTGGCCACCTCCTCTGCAATTGATGATGCTCTACTTAAAGTCGAATGCAAGAAATAGGGAACGGCCGCAAAAGAAAAAGATAAAAAGGAGGGACCGTTGCAGATTTGAGAAAAGCGATTGGAGAATTGGAAATTCTCGTATAAGTAGGCTGTTTGCTGCTGGGATCTCAAGGAAGCTACTATTTTGGATATTTCGGGTATCTTGGATAAAGAAATCAATTTTCACAGTGAAATTTGGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

42.12

Weight (kDa)

5.3

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	3 cut(s)	180, 689, 902
AclWI	GGATC	3 cut(s)	80, 242, 1007
AcoI	YGGCCR	3 cut(s)	95, 839, 899
AcsI	RAATTY	8 cut(s)	296, 457, 602, 673, 699, 796, 967, 1067
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	9 cut(s)	54, 283, 314, 344, 386, 607, 680, 784, 830
AjiI	CACGTC	1 cut(s)	613
AjnI	CCWGG	1 cut(s)	10
AleI	CACNNNNGTG	2 cut(s)	653, 656
Alw21I	GWGCWC	2 cut(s)	533, 771
AlwI	GGATC	3 cut(s)	80, 242, 1007
AoxI	GGCC	3 cut(s)	95, 839, 899
ApeKI	GCWGC	2 cut(s)	400, 992
ApoI	RAATTY	8 cut(s)	296, 457, 602, 673, 699, 796, 967, 1067
AspS9I	GGNCC	1 cut(s)	928
AsuHPI	GGTGA	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	928
BalI	TGGCCA	2 cut(s)	97, 841
BanII	GRGCYC	1 cut(s)	771
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	2 cut(s)	533, 771
BbvI	GCAGC	2 cut(s)	412, 979
BccI	CCATC	4 cut(s)	118, 123, 220, 259
BceAI	ACGGC	1 cut(s)	914
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	12
BclI	TGATCA	4 cut(s)	301, 328, 463, 514
BfaI	CTAG	2 cut(s)	201, 441
BglII	AGATCT	1 cut(s)	617
BisI	GCNGC	3 cut(s)	401, 902, 993
BlsI	GCNGC	3 cut(s)	402, 903, 994
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	928
BmgBI	CACGTC	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	928
BmiI	GGNNCC	1 cut(s)	929
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	4 cut(s)	622, 655, 692, 852
BpuEI	CTTGAG	2 cut(s)	785, 988
BsaJI	CCNNGG	2 cut(s)	10, 11
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	10, 11
BseGI	GGATG	4 cut(s)	88, 134, 637, 811
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	837
BseX3I	CGGCCG	1 cut(s)	899
BseXI	GCAGC	2 cut(s)	412, 979
BseYI	CCCAGC	1 cut(s)	995
Bsh1285I	CGRYCG	1 cut(s)	902
BshFI	GGCC	3 cut(s)	97, 841, 901
BsiEI	CGRYCG	1 cut(s)	902
BsiHKAI	GWGCWC	2 cut(s)	533, 771
BslFI	GGGAC	1 cut(s)	941
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	941
BsmI	GAATGC	1 cut(s)	886
BsnI	GGCC	3 cut(s)	97, 841, 901
Bsp1286I	GDGCHC	2 cut(s)	533, 771
BspACI	CCGC	3 cut(s)	180, 689, 902
BspANI	GGCC	3 cut(s)	97, 841, 901
BspLI	GGNNCC	1 cut(s)	929
BspPI	GGATC	3 cut(s)	80, 242, 1007
BssECI	CCNNGG	2 cut(s)	10, 11
BssNAI	GTATAC	1 cut(s)	34
BssSI	CACGAG	1 cut(s)	305
Bst1107I	GTATAC	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	4 cut(s)	256, 655, 932, 1063
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	363, 405, 438
BstDEI	CTNAG	1 cut(s)	801
BstF5I	GGATG	4 cut(s)	88, 134, 637, 811
BstMCI	CGRYCG	1 cut(s)	902
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	412, 979
BstX2I	RGATCY	3 cut(s)	247, 617, 999
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	3 cut(s)	247, 617, 999
BstZ17I	GTATAC	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	899
BsuRI	GGCC	3 cut(s)	97, 841, 901
BtrI	CACGTC	1 cut(s)	613
BtsCI	GGATG	4 cut(s)	88, 134, 637, 811
BtsIMutI	CAGTG	2 cut(s)	651, 1068
Cac8I	GCNNGC	3 cut(s)	363, 405, 438
Cfr13I	GGNCC	1 cut(s)	928
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	5 cut(s)	78, 93, 153, 326, 437
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	1 cut(s)	801
EaeI	YGGCCR	3 cut(s)	95, 839, 899
EagI	CGGCCG	1 cut(s)	899
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Ecl136II	GAGCTC	1 cut(s)	769
EclXI	CGGCCG	1 cut(s)	899
Eco24I	GRGCYC	1 cut(s)	771
Eco47I	GGWCC	1 cut(s)	928
Eco52I	CGGCCG	1 cut(s)	899
Eco53kI	GAGCTC	1 cut(s)	769
EcoICRI	GAGCTC	1 cut(s)	769
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	771
FaeI	CATG	5 cut(s)	81, 96, 156, 329, 440
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	5 cut(s)	77, 92, 152, 325, 436
FbaI	TGATCA	4 cut(s)	301, 328, 463, 514
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	401, 902, 993
FokI	GGATG	4 cut(s)	95, 141, 644, 818
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	3 cut(s)	401, 902, 993
FspBI	CTAG	2 cut(s)	201, 441
GluI	GCNGC	3 cut(s)	401, 902, 993
GsaI	CCCAGC	1 cut(s)	999
HaeIII	GGCC	3 cut(s)	97, 841, 901
Hin1II	CATG	5 cut(s)	81, 96, 156, 329, 440
HindIII	AAGCTT	2 cut(s)	338, 359
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	25, 61, 160, 292
Hpy188III	TCNNGA	3 cut(s)	283, 305, 638
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	99, 552, 726
HpyCH4III	ACNGT	4 cut(s)	256, 655, 932, 1063
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	5 cut(s)	365, 668, 853, 884, 936
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	801
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	5 cut(s)	81, 96, 156, 329, 440
Ksp22I	TGATCA	4 cut(s)	301, 328, 463, 514
LmnI	GCTCC	3 cut(s)	232, 565, 760
LpnPI	CCDG	3 cut(s)	24, 765, 981
Lsp1109I	GCAGC	2 cut(s)	412, 979
LweI	GCATC	4 cut(s)	622, 655, 692, 852
MaeI	CTAG	2 cut(s)	201, 441
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	1 cut(s)	646
MboII	GAAGA	9 cut(s)	257, 356, 459, 464, 494, 530, 537, 605, 731
MfeI	CAATTG	1 cut(s)	854
MflI	RGATCY	3 cut(s)	247, 617, 999
MhlI	GDGCHC	2 cut(s)	533, 771
MlsI	TGGCCA	2 cut(s)	97, 841
MluNI	TGGCCA	2 cut(s)	97, 841
MmeI	TCCRAC	1 cut(s)	66
Mox20I	TGGCCA	2 cut(s)	97, 841
MscI	TGGCCA	2 cut(s)	97, 841
MseI	TTAA	2 cut(s)	321, 872
MslI	CAYNNNNRTG	4 cut(s)	76, 441, 653, 656
Msp20I	TGGCCA	2 cut(s)	97, 841
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	854
Mva1269I	GAATGC	1 cut(s)	886
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	358
NlaIII	CATG	5 cut(s)	81, 96, 156, 329, 440
NlaIV	GGNNCC	1 cut(s)	929
NmuCI	GTSAC	1 cut(s)	646
NspI	RCATGY	1 cut(s)	440
OliI	CACNNNNGTG	2 cut(s)	653, 656
PaeI	GCATGC	1 cut(s)	440
PasI	CCCWGGG	1 cut(s)	11
PctI	GAATGC	1 cut(s)	886
PkrI	GCNGC	3 cut(s)	402, 903, 994
Psp124BI	GAGCTC	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	995
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	929
PspPI	GGNCC	1 cut(s)	928
PsuI	RGATCY	3 cut(s)	247, 617, 999
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
RseI	CAYNNNNRTG	4 cut(s)	76, 441, 653, 656
SacI	GAGCTC	1 cut(s)	771
SaqAI	TTAA	2 cut(s)	321, 872
SatI	GCNGC	3 cut(s)	401, 902, 993
Sau96I	GGNCC	1 cut(s)	928
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	2 cut(s)	533, 771
SfaNI	GCATC	4 cut(s)	622, 655, 692, 852
SinI	GGWCC	1 cut(s)	928
SmiMI	CAYNNNNRTG	4 cut(s)	76, 441, 653, 656
SmlI	CTYRAG	2 cut(s)	764, 1003
SmoI	CTYRAG	2 cut(s)	764, 1003
SphI	GCATGC	1 cut(s)	440
SsiI	CCGC	3 cut(s)	180, 689, 902
SspMI	CTAG	2 cut(s)	201, 441
SstI	GAGCTC	1 cut(s)	771
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	4 cut(s)	256, 655, 932, 1063
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	1 cut(s)	878
TauI	GCSGC	1 cut(s)	904
Tru1I	TTAA	2 cut(s)	321, 872
Tru9I	TTAA	2 cut(s)	321, 872
TscAI	CASTG	2 cut(s)	658, 1068
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	2 cut(s)	400, 992
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	8 cut(s)	60, 66, 81, 189, 237, 380, 606, 657
TspRI	CASTG	2 cut(s)	658, 1068
VpaK11BI	GGWCC	1 cut(s)	928
XapI	RAATTY	8 cut(s)	296, 457, 602, 673, 699, 796, 967, 1067
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	2 cut(s)	201, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.