Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Reverse (-)

29286286 .. 29287755

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG306600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTTAGTCTTTTTTTTTCCTCTCGAACTGAGACTCAATCTATATTGCCACAGCCCTCAGGACTTAATAATAAAGCTGCGGGTTATGGTTTGCCACAAAGTGAGGCTGATACTAGCCCGCTTGGCATTCTGGCTTTGCCTGCTATTCAGAAAAAAGCTCAAACAACCAGTGGATTGTCGAAAGATGACTCGGATGATGCTGACTTGGAAGGAGTAGACATTGAAATTACTGAGAATATGGATCCCACTGATGAGGTTAAGGACGCTGCTTCAATTGCGGTGAGGAGATTGTATGCCAGGGCATCTCATGATTTGGTGCCACAAGCGATTTTAGCTACCCAGAGTCTCATTCAGCTTGATAACAGGGAGCGTGAGGCAGCCAAAGCTGCGGTGGCGGCTGCTGCTAATTCATCTTCTAACTCCCTTATATTGCATTCCATGCCATTACGTCACTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

153

Amino Acids

16.31

Weight (kDa)

4.94

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	5 cut(s)	80, 119, 278, 389, 395
AclWI	GGATC	2 cut(s)	236, 249
AdeI	CACNNNGTG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	224, 273
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	5 cut(s)	77, 158, 335, 355, 386
AluI	AGCT	5 cut(s)	77, 158, 335, 355, 386
Alw26I	GTCTC	2 cut(s)	26, 350
AlwI	GGATC	2 cut(s)	236, 249
ApeKI	GCWGC	6 cut(s)	77, 266, 377, 386, 398, 401
AsuHPI	GGTGA	1 cut(s)	292
AxyI	CCTNAGG	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	316
BbvI	GCAGC	6 cut(s)	64, 253, 373, 385, 388, 389
BciT130I	CCWGG	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	26, 350
BfaI	CTAG	1 cut(s)	114
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	7 cut(s)	78, 267, 378, 387, 396, 399, 402
BlsI	GCNGC	7 cut(s)	79, 268, 379, 388, 397, 400, 403
Bme1390I	CCNGG	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	243, 318
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	2 cut(s)	187, 311
BsaJI	CCNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	168
Bse21I	CCTNAGG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	199
BseMII	CTCAG	3 cut(s)	21, 72, 222
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	6 cut(s)	64, 253, 373, 385, 388, 389
BshNI	GGYRCC	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	26, 350
BsmI	GAATGC	2 cut(s)	126, 433
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	5 cut(s)	80, 119, 278, 389, 395
BspCNI	CTCAG	3 cut(s)	22, 71, 223
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	243, 318
BspPI	GGATC	2 cut(s)	236, 249
BspT107I	GGYRCC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	119, 141
BstDEI	CTNAG	3 cut(s)	30, 58, 231
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	2 cut(s)	26, 350
BstMBI	GATC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	296
BstV1I	GCAGC	6 cut(s)	64, 253, 373, 385, 388, 389
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	175, 246
Cac8I	GCNNGC	2 cut(s)	119, 141
CciI	TCATGA	1 cut(s)	307
CseI	GACGC	1 cut(s)	272
CviAII	CATG	2 cut(s)	308, 439
DdeI	CTNAG	3 cut(s)	30, 58, 231
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
DraIII	CACNNNGTG	1 cut(s)	101
Eco81I	CCTNAGG	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	311, 442
FaiI	YATR	7 cut(s)	44, 87, 239, 294, 309, 428, 440
FatI	CATG	2 cut(s)	307, 438
FauI	CCCGC	2 cut(s)	73, 126
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	7 cut(s)	78, 267, 378, 387, 396, 399, 402
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	7 cut(s)	78, 267, 378, 387, 396, 399, 402
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	7 cut(s)	78, 267, 378, 387, 396, 399, 402
HgaI	GACGC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	311, 442
HinfI	GANTC	3 cut(s)	34, 188, 343
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	150, 193
Hpy188III	TCNNGA	3 cut(s)	24, 60, 308
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	1 cut(s)	433
HpyF3I	CTNAG	3 cut(s)	30, 58, 231
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	2 cut(s)	311, 442
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	8 cut(s)	45, 116, 153, 181, 283, 310, 349, 353
Lsp1109I	GCAGC	6 cut(s)	64, 253, 373, 385, 388, 389
LweI	GCATC	2 cut(s)	187, 311
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	405
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	3 cut(s)	225, 273, 406
MlyI	GAGTC	3 cut(s)	28, 182, 352
MnlI	CCTC	6 cut(s)	31, 67, 97, 247, 276, 367
MseI	TTAA	3 cut(s)	66, 258, 460
MspR9I	CCNGG	1 cut(s)	298
MunI	CAATTG	1 cut(s)	273
Mva1269I	GAATGC	2 cut(s)	126, 433
MvaI	CCWGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	311, 442
NlaIV	GGNNCC	2 cut(s)	243, 318
NmuCI	GTSAC	1 cut(s)	449
PagI	TCATGA	1 cut(s)	307
PctI	GAATGC	2 cut(s)	126, 433
PkrI	GCNGC	7 cut(s)	79, 268, 379, 388, 397, 400, 403
PleI	GAGTC	3 cut(s)	28, 182, 351
PpsI	GAGTC	3 cut(s)	28, 182, 351
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	243, 318
PsuI	RGATCY	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	66, 258, 460
SatI	GCNGC	7 cut(s)	78, 267, 378, 387, 396, 399, 402
Sau3AI	GATC	1 cut(s)	241
SchI	GAGTC	3 cut(s)	28, 182, 352
ScrFI	CCNGG	1 cut(s)	298
SetI	ASST	7 cut(s)	79, 160, 258, 337, 357, 388, 451
SfaNI	GCATC	2 cut(s)	187, 311
Sse9I	AATT	3 cut(s)	225, 273, 406
SsiI	CCGC	5 cut(s)	80, 119, 278, 389, 395
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	296
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	2 cut(s)	25, 179
TasI	AATT	3 cut(s)	225, 273, 406
TauI	GCSGC	1 cut(s)	398
Tru1I	TTAA	3 cut(s)	66, 258, 460
Tru9I	TTAA	3 cut(s)	66, 258, 460
TscAI	CASTG	2 cut(s)	175, 253
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	6 cut(s)	77, 266, 377, 386, 398, 401
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	2 cut(s)	175, 253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.