Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Forward (+)

10533828 .. 10538203

Gene Structure 4376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCTTTCCCTGGGTATTATTCTGAGCAAGTGTACCGCTGCAACACATATTCAATGTCTGGAAATAATTCGTCTTCATGGGATGCCCCTTCATGGCTACAACAAGAACCATATAATTGCAATTTGGGATGGGGAGATCATTCCAACTACTCATGGTCTGAAAATCCATATTATGAAACCGCACAATGGTCATATCCATCTCACAAATTCCCATCATCTTATCAAGCTCCAATTTATCAACCAGAAGATCCTACTATAAAGGAGATGGTGTTTGAGCTATTGAAGAGATCAGAAAAGTTTGATCAAGAGGTTGCAATTCTTAAACAGGATCAATCAAAGCTTGAAGAAAGGCAATCAAAACTTGCAAAAACGTTATCGGAAATTGAACTTCAAATTTTGCGGCTTGCTAATGCCTGGGAGGAAGAGGACATAATGCTTCCTACTAAACCAGAAGAAAGATTTGATTTTCAGCTCGATGAGGAAGATAAATATTTTGAACCAAACATGAAAAGAAAAATCATTGATGATCAAGCTACCAAGAGCACTCATCCTCCTTCTATTAAAGTTTCTATGGAGTTATGTGCTGACAAGCAACAGAATGAAGAACCAAAGGATGAAATTATTTTTGAAAAAGTTGTGAGAACTCATACATCGGATGCTCTTGATGAAGTCACCACTGTGGTAGTTGATGCACCAAATTTTCAAGCATCTGTGGAGCAACAAATTTGCGAAGTTTTCCCTTCTTTACCCTCCGAGCTCGTTCTTCCCATTATTCCAGCTCCAAGAATTGAGCTCATGTGTGTTCCCAAGCTTCCCTCAAATTCTAAGGATGAGTTCCCCCCACAAGCACTGCAGCATCCTTGGCCACCTCCTTTACAATTGTTGACGCTCTACTTAAAGTTTGATGCAAGGAAAAACATGAAGTGGTCTCGAAAGAAAAAGATAAAAAGGAGGAAGCAATTCATACTCAAGACAAGTGATTGGAAAATTGGAAATTCTCGGATAAGTAGGATGTTTGCTGCTGCGATTTCAAGAAAGCTACTATTTTGGATATTTTGGGCATCTCAGGTAAAAGAAATCGGTTTTCACTGTGAAATTCTCGTTGTGATAACTTGTAGCAGAAGTGTCCGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

378

Amino Acids

44.25

Weight (kDa)

5.85

Isoelectric Point (pI)

60.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	37, 180, 400
AclI	AACGTT	1 cut(s)	371
AclWI	GGATC	2 cut(s)	242, 336
AcoI	YGGCCR	1 cut(s)	863
AcsI	RAATTY	7 cut(s)	206, 393, 697, 723, 820, 994, 1095
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	93, 186
AgsI	TTSAA	9 cut(s)	54, 283, 344, 386, 392, 497, 629, 704, 1032
AjnI	CCWGG	2 cut(s)	10, 413
AleI	CACNNNNGTG	1 cut(s)	677
Alw21I	GWGCWC	3 cut(s)	545, 759, 795
Alw26I	GTCTC	1 cut(s)	933
AlwI	GGATC	2 cut(s)	242, 336
AoxI	GGCC	1 cut(s)	863
ApeKI	GCWGC	4 cut(s)	39, 853, 1019, 1022
ApoI	RAATTY	7 cut(s)	206, 393, 697, 723, 820, 994, 1095
Asp700I	GAANNNNTTC	2 cut(s)	67, 959
AsuHPI	GGTGA	1 cut(s)	664
BalI	TGGCCA	1 cut(s)	865
BanII	GRGCYC	2 cut(s)	759, 795
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	3 cut(s)	545, 759, 795
BbvI	GCAGC	4 cut(s)	26, 865, 1006, 1009
BccI	CCATC	4 cut(s)	123, 205, 220, 259
BciT130I	CCWGG	2 cut(s)	12, 415
BclI	TGATCA	2 cut(s)	301, 526
BcoDI	GTCTC	1 cut(s)	933
BfmI	CTRYAG	1 cut(s)	851
BisI	GCNGC	5 cut(s)	40, 401, 854, 1020, 1023
BlsI	GCNGC	5 cut(s)	41, 402, 855, 1021, 1024
Bme1390I	CCNGG	2 cut(s)	12, 415
BmrFI	CCNGG	2 cut(s)	12, 415
BmsI	GCATC	7 cut(s)	73, 646, 679, 716, 865, 895, 1070
BpiI	GAAGAC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	953
BsaI	GGTCTC	1 cut(s)	933
BsaJI	CCNNGG	4 cut(s)	10, 11, 414, 860
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 535, 565
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 186
BseBI	CCWGG	2 cut(s)	12, 415
BseDI	CCNNGG	4 cut(s)	10, 11, 414, 860
BseGI	GGATG	8 cut(s)	88, 134, 547, 619, 661, 835, 856, 1017
BseLI	CCNNNNNNNGG	2 cut(s)	93, 186
BseMII	CTCAG	2 cut(s)	15, 1079
BseXI	GCAGC	4 cut(s)	26, 865, 1006, 1009
BshFI	GGCC	1 cut(s)	865
BsiHKAI	GWGCWC	3 cut(s)	545, 759, 795
BslI	CCNNNNNNNGG	2 cut(s)	93, 186
BsmAI	GTCTC	1 cut(s)	933
BsnI	GGCC	1 cut(s)	865
Bso31I	GGTCTC	1 cut(s)	933
Bsp1286I	GDGCHC	3 cut(s)	545, 759, 795
Bsp143I	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
BspACI	CCGC	3 cut(s)	37, 180, 400
BspANI	GGCC	1 cut(s)	865
BspCNI	CTCAG	2 cut(s)	16, 1078
BspMAI	CTGCAG	1 cut(s)	855
BspPI	GGATC	2 cut(s)	242, 336
BspTNI	GGTCTC	1 cut(s)	933
BssECI	CCNNGG	4 cut(s)	10, 11, 414, 860
BssMI	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
BssT1I	CCWWGG	1 cut(s)	860
Bst2UI	CCWGG	2 cut(s)	12, 415
Bst4CI	ACNGT	2 cut(s)	679, 1091
Bst6I	CTCTTC	2 cut(s)	278, 417
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	24, 825, 1065
BstF5I	GGATG	8 cut(s)	88, 134, 547, 619, 661, 835, 856, 1017
BstKTI	GATC	6 cut(s)	139, 250, 290, 304, 331, 529
BstMAI	GTCTC	1 cut(s)	933
BstMBI	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	862
BstNI	CCWGG	2 cut(s)	12, 415
BstSCI	CCNGG	2 cut(s)	10, 413
BstSFI	CTRYAG	1 cut(s)	851
BstV1I	GCAGC	4 cut(s)	26, 865, 1006, 1009
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	865
BtsCI	GGATG	8 cut(s)	88, 134, 547, 619, 661, 835, 856, 1017
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	3 cut(s)	675, 848, 1087
Cac8I	GCNNGC	1 cut(s)	405
CseI	GACGC	1 cut(s)	895
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	6 cut(s)	78, 93, 153, 505, 796, 919
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	24, 825, 1065
DpnI	GATC	6 cut(s)	138, 249, 289, 303, 330, 528
DpnII	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
EaeI	YGGCCR	1 cut(s)	863
Eam1104I	CTCTTC	2 cut(s)	278, 417
EarI	CTCTTC	2 cut(s)	278, 417
Ecl136II	GAGCTC	2 cut(s)	757, 793
Eco130I	CCWWGG	1 cut(s)	860
Eco24I	GRGCYC	2 cut(s)	759, 795
Eco31I	GGTCTC	1 cut(s)	933
Eco53kI	GAGCTC	2 cut(s)	757, 793
EcoICRI	GAGCTC	2 cut(s)	757, 793
EcoRII	CCWGG	2 cut(s)	10, 413
EcoT14I	CCWWGG	1 cut(s)	860
EcoT38I	GRGCYC	2 cut(s)	759, 795
ErhI	CCWWGG	1 cut(s)	860
FaeI	CATG	6 cut(s)	81, 96, 156, 508, 799, 922
FatI	CATG	6 cut(s)	77, 92, 152, 504, 795, 918
FbaI	TGATCA	2 cut(s)	301, 526
Fnu4HI	GCNGC	5 cut(s)	40, 401, 854, 1020, 1023
FokI	GGATG	8 cut(s)	95, 141, 534, 626, 668, 842, 843, 1024
FriOI	GRGCYC	2 cut(s)	759, 795
Fsp4HI	GCNGC	5 cut(s)	40, 401, 854, 1020, 1023
GluI	GCNGC	5 cut(s)	40, 401, 854, 1020, 1023
HaeIII	GGCC	1 cut(s)	865
HgaI	GACGC	1 cut(s)	895
Hin1II	CATG	6 cut(s)	81, 96, 156, 508, 799, 922
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	2 cut(s)	338, 809
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	2 cut(s)	34, 885
Hpy188I	TCNGA	7 cut(s)	25, 160, 292, 379, 655, 754, 1002
Hpy188III	TCNNGA	6 cut(s)	60, 305, 662, 930, 970, 1032
Hpy8I	GTNNAC	2 cut(s)	34, 885
HpyAV	CCTTC	3 cut(s)	99, 564, 750
HpyCH4III	ACNGT	2 cut(s)	679, 1091
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	7 cut(s)	42, 120, 314, 365, 692, 853, 908
HpyF10VI	GCNNNNNNNGC	1 cut(s)	862
HpyF3I	CTNAG	3 cut(s)	24, 825, 1065
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	6 cut(s)	81, 96, 156, 508, 799, 922
Ksp22I	TGATCA	2 cut(s)	301, 526
Kzo9I	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
LmnI	GCTCC	3 cut(s)	232, 715, 784
LpnPI	CCDG	9 cut(s)	24, 45, 255, 311, 400, 427, 462, 789, 1052
Lsp1109I	GCAGC	4 cut(s)	26, 865, 1006, 1009
LweI	GCATC	7 cut(s)	73, 646, 679, 716, 865, 895, 1070
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	6 cut(s)	138, 249, 289, 303, 330, 528
MboI	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
MboII	GAAGA	9 cut(s)	66, 257, 295, 356, 434, 464, 494, 614, 755
MfeI	CAATTG	1 cut(s)	878
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	3 cut(s)	545, 759, 795
MlsI	TGGCCA	1 cut(s)	865
MluNI	TGGCCA	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	9 cut(s)	301, 412, 418, 472, 561, 760, 826, 879, 945
Mox20I	TGGCCA	1 cut(s)	865
MroXI	GAANNNNTTC	2 cut(s)	67, 959
MscI	TGGCCA	1 cut(s)	865
MseI	TTAA	3 cut(s)	321, 561, 896
MslI	CAYNNNNRTG	1 cut(s)	677
Msp20I	TGGCCA	1 cut(s)	865
MspA1I	CMGCKG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	12, 415
MunI	CAATTG	1 cut(s)	878
MvaI	CCWGG	2 cut(s)	12, 415
MwoI	GCNNNNNNNGC	1 cut(s)	862
NdeII	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
NlaIII	CATG	6 cut(s)	81, 96, 156, 508, 799, 922
NmuCI	GTSAC	1 cut(s)	670
OliI	CACNNNNGTG	1 cut(s)	677
PasI	CCCWGGG	1 cut(s)	11
PdmI	GAANNNNTTC	2 cut(s)	67, 959
PkrI	GCNGC	5 cut(s)	41, 402, 855, 1021, 1024
Psp124BI	GAGCTC	2 cut(s)	759, 795
Psp1406I	AACGTT	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	10, 413
PspGI	CCWGG	2 cut(s)	10, 413
PstI	CTGCAG	1 cut(s)	855
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	677
SacI	GAGCTC	2 cut(s)	759, 795
SaqAI	TTAA	3 cut(s)	321, 561, 896
SatI	GCNGC	5 cut(s)	40, 401, 854, 1020, 1023
Sau3AI	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
ScrFI	CCNGG	2 cut(s)	12, 415
SduI	GDGCHC	3 cut(s)	545, 759, 795
SfaNI	GCATC	7 cut(s)	73, 646, 679, 716, 865, 895, 1070
SfcI	CTRYAG	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
SsiI	CCGC	3 cut(s)	37, 180, 400
SspI	AATATT	1 cut(s)	491
SstI	GAGCTC	2 cut(s)	759, 795
StyD4I	CCNGG	2 cut(s)	10, 413
StyI	CCWWGG	1 cut(s)	860
TaaI	ACNGT	2 cut(s)	679, 1091
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	474, 931
TauI	GCSGC	1 cut(s)	403
Tru1I	TTAA	3 cut(s)	321, 561, 896
Tru9I	TTAA	3 cut(s)	321, 561, 896
TscAI	CASTG	3 cut(s)	682, 855, 1094
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	4 cut(s)	39, 853, 1019, 1022
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	9 cut(s)	66, 81, 189, 521, 615, 630, 681, 935, 952
TspGWI	ACGGA	1 cut(s)	1118
TspRI	CASTG	3 cut(s)	682, 855, 1094
XapI	RAATTY	7 cut(s)	206, 393, 697, 723, 820, 994, 1095
XmnI	GAANNNNTTC	2 cut(s)	67, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.