Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Reverse (-)

29294728 .. 29316307

Gene Structure 21580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG306700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTTTCCCTGGGTATTATTCCGAGCAAGTGTACAACTGCAACACATATTCAATGTCTGGAAATAATTCATATTCATGGGATGCTCCTCCATGGCCAAAACAAGAACCATATAATTGCAACTTGGGATGGGGAGATCATTCCAACTACTCATGGTCTGAAAATTCAGATTATGAAACTGCACAGTGGTCGTATCACTCTAGCAATGTCCTATCATCCTATCAAACTCCAATCTATTTGCAAGAAGATCCTACTATAAAGGAGATGGTAGTTGAACTATTGAAGAGATCAGAAAAGTTTGATCAAGAGGTTGCAATTCTTAAACAGGATCAATCAAAGCTTGAAGAAAGGCAATCAAAACTTGCACAAACGTTATCGGACATTGAACTTCAAATTTTGCGGCTTGCTAATGCCTGGGAGGAAGAGGACGTAATGCTTCCTACTAAACCAGAAGAAAGATTTGATTTTCAGCTCGATGAGGAAGATGAATATTTTGAACCATACATGAAAAGAAAAATCATTGATGATCAAGCTACTGAGAGCACTCATCCTCCTTCTACTAATGTTCCTATGGAGTTGTGCGCTGACAAGCAAGAGAATGAAGAACCAAAGGATGAAATTATTTTTGAAAAAATTGTGAGAACTCATACATCGGATGGTCTTGATGAAGTCACCACTATGTGGTGTCTACTGGTCAATGATGGTAGAGGGGTGGGTGAAGCCCTTGATGAAACAGTGTGCATCAAGGGATTACAGAGAATGGAAGCAGAGCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

258

Amino Acids

30.06

Weight (kDa)

4.31

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	681
AccI	GTMKAC	1 cut(s)	688
AciI	CCGC	1 cut(s)	400
AclI	AACGTT	1 cut(s)	371
AclWI	GGATC	2 cut(s)	242, 336
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	163, 393
AdeI	CACNNNGTG	1 cut(s)	681
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	681
AgsI	TTSAA	8 cut(s)	54, 275, 283, 344, 386, 392, 497, 629
AjnI	CCWGG	2 cut(s)	10, 413
AluBI	AGCT	3 cut(s)	340, 472, 533
AluI	AGCT	3 cut(s)	340, 472, 533
Alw21I	GWGCWC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	242, 336
AoxI	GGCC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	163, 393
Asp700I	GAANNNNTTC	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	584
AsuHPI	GGTGA	2 cut(s)	664, 728
BalI	TGGCCA	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	545
BccI	CCATC	4 cut(s)	123, 259, 650, 695
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciT130I	CCWGG	2 cut(s)	12, 415
BclI	TGATCA	2 cut(s)	301, 526
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
Bme1390I	CCNGG	2 cut(s)	12, 415
BmrFI	CCNGG	2 cut(s)	12, 415
BmsI	GCATC	2 cut(s)	73, 750
BsaJI	CCNNGG	4 cut(s)	10, 11, 92, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	681
Bse1I	ACTGG	1 cut(s)	696
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	12, 415
BseDI	CCNNGG	4 cut(s)	10, 11, 92, 414
BseGI	GGATG	6 cut(s)	88, 134, 215, 547, 619, 661
BseLI	CCNNNNNNNGG	1 cut(s)	681
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	1 cut(s)	696
BseRI	GAGGAG	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	681
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	529
BspPI	GGATC	2 cut(s)	242, 336
BsrDI	GCAATG	1 cut(s)	211
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	696
BssECI	CCNNGG	4 cut(s)	10, 11, 92, 414
BssMI	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	2 cut(s)	12, 415
Bst4CI	ACNGT	2 cut(s)	186, 736
Bst6I	CTCTTC	2 cut(s)	278, 417
BstAUI	TGTACA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	6 cut(s)	88, 134, 215, 547, 619, 661
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	6 cut(s)	139, 250, 290, 304, 331, 529
BstMBI	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
BstNI	CCWGG	2 cut(s)	12, 415
BstSCI	CCNGG	2 cut(s)	10, 413
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	6 cut(s)	88, 134, 215, 547, 619, 661
BtsIMutI	CAGTG	2 cut(s)	191, 741
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	1 cut(s)	584
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	4 cut(s)	78, 93, 153, 505
CviJI	RGCY	7 cut(s)	5, 97, 340, 403, 472, 533, 722
CviKI_1	RGCY	7 cut(s)	5, 97, 340, 403, 472, 533, 722
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	6 cut(s)	138, 249, 289, 303, 330, 528
DpnII	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
DraIII	CACNNNGTG	1 cut(s)	681
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	278, 417
EarI	CTCTTC	2 cut(s)	278, 417
Eco130I	CCWWGG	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	10, 413
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	4 cut(s)	81, 96, 156, 508
FatI	CATG	4 cut(s)	77, 92, 152, 504
FbaI	TGATCA	2 cut(s)	301, 526
FblI	GTMKAC	1 cut(s)	688
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	6 cut(s)	95, 141, 202, 534, 626, 668
Fsp4HI	GCNGC	1 cut(s)	401
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	4 cut(s)	81, 96, 156, 508
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HindIII	AAGCTT	1 cut(s)	338
HphI	GGTGA	2 cut(s)	664, 728
Hpy166II	GTNNAC	2 cut(s)	34, 689
Hpy188I	TCNGA	6 cut(s)	25, 160, 169, 292, 379, 655
Hpy188III	TCNNGA	3 cut(s)	60, 305, 662
Hpy8I	GTNNAC	2 cut(s)	34, 689
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	2 cut(s)	186, 736
HpyCH4IV	ACGT	2 cut(s)	371, 429
HpyCH4V	TGCA	7 cut(s)	42, 120, 182, 241, 314, 365, 741
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	2 cut(s)	371, 429
Hsp92II	CATG	4 cut(s)	81, 96, 156, 508
HspAI	GCGC	1 cut(s)	582
Ksp22I	TGATCA	2 cut(s)	301, 526
Kzo9I	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	7 cut(s)	24, 45, 311, 400, 427, 462, 677
LweI	GCATC	2 cut(s)	73, 750
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	371, 429
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	6 cut(s)	138, 249, 289, 303, 330, 528
MboI	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
MboII	GAAGA	7 cut(s)	257, 295, 356, 434, 464, 494, 614
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	545
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	7 cut(s)	67, 115, 163, 315, 393, 618, 633
MluNI	TGGCCA	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	99, 301, 412, 418, 472, 561, 701
Mox20I	TGGCCA	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	2 cut(s)	76, 677
Msp20I	TGGCCA	1 cut(s)	97
MspR9I	CCNGG	2 cut(s)	12, 415
MvaI	CCWGG	2 cut(s)	12, 415
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
NlaIII	CATG	4 cut(s)	81, 96, 156, 508
NmuCI	GTSAC	1 cut(s)	670
PasI	CCCWGGG	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	681
PkrI	GCNGC	1 cut(s)	402
Psp1406I	AACGTT	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	10, 413
PspGI	CCWGG	2 cut(s)	10, 413
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	76, 677
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	6 cut(s)	136, 247, 287, 301, 328, 526
ScrFI	CCNGG	2 cut(s)	12, 415
SduI	GDGCHC	1 cut(s)	545
SetI	ASST	6 cut(s)	312, 342, 374, 432, 474, 535
SfaNI	GCATC	2 cut(s)	73, 750
SmiMI	CAYNNNNRTG	2 cut(s)	76, 677
Sse9I	AATT	7 cut(s)	67, 115, 163, 315, 393, 618, 633
SsiI	CCGC	1 cut(s)	400
SspI	AATATT	1 cut(s)	491
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	10, 413
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	186, 736
TaiI	ACGT	2 cut(s)	374, 432
TaqI	TCGA	1 cut(s)	474
TasI	AATT	7 cut(s)	67, 115, 163, 315, 393, 618, 633
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	191, 741
TseFI	GTSAC	1 cut(s)	670
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	9 cut(s)	60, 66, 189, 501, 521, 615, 630, 681, 744
TspRI	CASTG	2 cut(s)	191, 741
Van91I	CCANNNNNTGG	1 cut(s)	681
XapI	RAATTY	2 cut(s)	163, 393
XmiI	GTMKAC	1 cut(s)	688
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.