Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000082.1

Orthogroup ID

OG0005559

Physical Location & Seq

Genomic Coordinates Reverse (-)

122526 .. 124349

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000082.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atggacttatctgggttttattccgagcaagcatactgctccaacagatattcaatatcggaaaataattcatattattgggatgctccttcatggccacaacaagaaccatctaatagcaatttgagatggggagatcattctaactactcatggtctgaaaatccatattatgaaaccgcacaatggtcagatccatctagcaatgtcccatcatcttatcaagctccaatctatttgcaagaagatcctactataaaggagatggtggttgaactattgaggagatcagaaaaatttgatcacgaggttgaaaggcttaaacatgatcaatcaaagcttgaagaaaggcaatccaatcttgcacaagcactattggaaattgaatttcatatatcacagcttgctaatgcttgggagttagaggatgaaaggcatgctagtggaagagaagaaaattttgatcgtaagcccgatcaggaagatgactattttgagctaaattatattattgatgatcaagctactgagagcacctatcttccttcttctactaaagttcctatgaagctatgtgctaacaagccaacgaatgaagaaccaaaggatgaaattatttttgaaaaagttgtgagaactcatacatcggatgctcttgatgaagtcaccactgtggtagttgatgcaccaaattttcaagcatctgtggagcaccaaatttgcgaagttttcccttctttaccctccgagctcgttctccccattattccagctccaagaattgagctcatgtgtgttcccaagcttccctcaaattctaaggatgagttccccccacaatcactgcagcatccttggccacctcctttacaattgttgacgctctacttaaagtttgatgcaaggaaaaacatgaagtggtctcgaaagaaaaagataaaaaggaggaagcaattcatactcaagacaagtgattggagaattggaaattctcgtctaagtaggataaacacaacggccattgttaatatgaaaatttgtgatctggagaagcatgtgacggttagtgtagacttgtataacctatgtgagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

42.63

Weight (kDa)

5.06

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005559)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101141 RchiOBHm_Chr2g0146981 RchiOBHm_Chr6g0270591
rosa_laevigata	RLG00000006277 RLG00000008803
rosa_multiflora	Rmu_sc0000082.1_g000035 Rmu_sc0026180.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045610 Rroxscaffold_2G00076120 Rroxscaffold_2G00139700 Rroxscaffold_3G00249380 Rroxscaffold_5G00347260 Rroxscaffold_5G00366700 Rroxscaffold_6G00413360
rosa_samantha	Rh1BG176700 Rh1DG115600 Rh1DG206200 Rh2BG631300 Rh3DG307000 Rh4BG059000 Rh4BG132000 Rh4BG315900 Rh4CG331400 Rh4DG065100 Rh5DG576200 Rh7BG306600 Rh7BG306700 Rh7BG307100 Rh7CG322600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1071
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	188, 242
AcoI	YGGCCR	3 cut(s)	95, 857, 1017
AcsI	RAATTY	8 cut(s)	296, 386, 457, 691, 717, 814, 988, 1035
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	7 cut(s)	54, 275, 314, 344, 386, 623, 698
AleI	CACNNNNGTG	1 cut(s)	671
Alw21I	GWGCWC	4 cut(s)	536, 714, 753, 789
Alw26I	GTCTC	1 cut(s)	927
AlwI	GGATC	2 cut(s)	188, 242
AoxI	GGCC	3 cut(s)	95, 857, 1017
ApeKI	GCWGC	1 cut(s)	847
ApoI	RAATTY	8 cut(s)	296, 386, 457, 691, 717, 814, 988, 1035
Asp700I	GAANNNNTTC	1 cut(s)	953
AsuHPI	GGTGA	1 cut(s)	658
BalI	TGGCCA	2 cut(s)	97, 859
BanII	GRGCYC	2 cut(s)	753, 789
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	4 cut(s)	536, 714, 753, 789
BbvI	GCAGC	1 cut(s)	859
BccI	CCATC	5 cut(s)	118, 123, 205, 220, 259
BceAI	ACGGC	1 cut(s)	1032
BclI	TGATCA	3 cut(s)	301, 328, 517
BcoDI	GTCTC	1 cut(s)	927
BfaI	CTAG	2 cut(s)	201, 441
BfmI	CTRYAG	1 cut(s)	845
BisI	GCNGC	1 cut(s)	848
BlsI	GCNGC	1 cut(s)	849
BmsI	GCATC	6 cut(s)	73, 640, 673, 710, 859, 889
BpmI	CTGGAG	1 cut(s)	1067
BpuEI	CTTGAG	1 cut(s)	947
BsaI	GGTCTC	1 cut(s)	927
BsaJI	CCNNGG	1 cut(s)	854
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	6 cut(s)	88, 433, 613, 655, 829, 850
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	859
BshFI	GGCC	3 cut(s)	97, 859, 1019
BsiHKAI	GWGCWC	4 cut(s)	536, 714, 753, 789
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	927
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	3 cut(s)	97, 859, 1019
Bso31I	GGTCTC	1 cut(s)	927
Bsp1286I	GDGCHC	4 cut(s)	536, 714, 753, 789
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	3 cut(s)	97, 859, 1019
BspCNI	CTCAG	1 cut(s)	520
BspMAI	CTGCAG	1 cut(s)	849
BspPI	GGATC	2 cut(s)	188, 242
BspTNI	GGTCTC	1 cut(s)	927
BsrDI	GCAATG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	854
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	854
Bst2BI	CACGAG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	673, 1063
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	30, 405, 438
BstDEI	CTNAG	3 cut(s)	528, 819, 998
BstF5I	GGATG	6 cut(s)	88, 433, 613, 655, 829, 850
BstMAI	GTCTC	1 cut(s)	927
BstMWI	GCNNNNNNNGC	1 cut(s)	856
BstNSI	RCATGY	2 cut(s)	440, 1058
BstSFI	CTRYAG	1 cut(s)	845
BstV1I	GCAGC	1 cut(s)	859
BstX2I	RGATCY	2 cut(s)	193, 247
BstYI	RGATCY	2 cut(s)	193, 247
BsuRI	GGCC	3 cut(s)	97, 859, 1019
BtsCI	GGATG	6 cut(s)	88, 433, 613, 655, 829, 850
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	2 cut(s)	669, 842
Cac8I	GCNNGC	3 cut(s)	30, 405, 438
CseI	GACGC	1 cut(s)	889
CviAII	CATG	7 cut(s)	93, 153, 326, 437, 790, 913, 1055
DdeI	CTNAG	3 cut(s)	528, 819, 998
EaeI	YGGCCR	3 cut(s)	95, 857, 1017
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Ecl136II	GAGCTC	2 cut(s)	751, 787
Eco130I	CCWWGG	1 cut(s)	854
Eco24I	GRGCYC	2 cut(s)	753, 789
Eco31I	GGTCTC	1 cut(s)	927
Eco53kI	GAGCTC	2 cut(s)	751, 787
EcoICRI	GAGCTC	2 cut(s)	751, 787
EcoT14I	CCWWGG	1 cut(s)	854
EcoT38I	GRGCYC	2 cut(s)	753, 789
ErhI	CCWWGG	1 cut(s)	854
FaeI	CATG	7 cut(s)	96, 156, 329, 440, 793, 916, 1058
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	7 cut(s)	92, 152, 325, 436, 789, 912, 1054
FbaI	TGATCA	3 cut(s)	301, 328, 517
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	1 cut(s)	848
FokI	GGATG	6 cut(s)	95, 440, 620, 662, 836, 837
FriOI	GRGCYC	2 cut(s)	753, 789
Fsp4HI	GCNGC	1 cut(s)	848
FspBI	CTAG	2 cut(s)	201, 441
GluI	GCNGC	1 cut(s)	848
GsuI	CTGGAG	1 cut(s)	1067
HaeIII	GGCC	3 cut(s)	97, 859, 1019
HgaI	GACGC	1 cut(s)	889
Hin1II	CATG	7 cut(s)	96, 156, 329, 440, 793, 916, 1058
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	2 cut(s)	338, 803
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	2 cut(s)	879, 1072
Hpy188I	TCNGA	7 cut(s)	25, 61, 160, 193, 292, 649, 748
Hpy188III	TCNNGA	6 cut(s)	305, 479, 656, 924, 964, 1046
Hpy8I	GTNNAC	2 cut(s)	879, 1072
HpyAV	CCTTC	3 cut(s)	99, 555, 744
HpyCH4III	ACNGT	2 cut(s)	673, 1063
HpyCH4V	TGCA	5 cut(s)	241, 365, 686, 847, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	856
HpyF3I	CTNAG	3 cut(s)	528, 819, 998
Hsp92II	CATG	7 cut(s)	96, 156, 329, 440, 793, 916, 1058
Ksp22I	TGATCA	3 cut(s)	301, 328, 517
LmnI	GCTCC	5 cut(s)	44, 91, 232, 709, 778
LpnPI	CCDG	3 cut(s)	464, 783, 1031
Lsp1109I	GCAGC	1 cut(s)	859
LweI	GCATC	6 cut(s)	73, 640, 673, 710, 859, 889
MaeI	CTAG	2 cut(s)	201, 441
MaeIII	GTNAC	2 cut(s)	664, 1057
MboII	GAAGA	8 cut(s)	257, 356, 459, 464, 494, 533, 540, 608
MfeI	CAATTG	1 cut(s)	872
MflI	RGATCY	2 cut(s)	193, 247
MhlI	GDGCHC	4 cut(s)	536, 714, 753, 789
MlsI	TGGCCA	2 cut(s)	97, 859
MluNI	TGGCCA	2 cut(s)	97, 859
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	7 cut(s)	276, 301, 418, 754, 820, 873, 939
Mox20I	TGGCCA	2 cut(s)	97, 859
MroXI	GAANNNNTTC	1 cut(s)	953
MscI	TGGCCA	2 cut(s)	97, 859
MseI	TTAA	3 cut(s)	321, 890, 1026
MslI	CAYNNNNRTG	2 cut(s)	441, 671
Msp20I	TGGCCA	2 cut(s)	97, 859
MunI	CAATTG	1 cut(s)	872
MwoI	GCNNNNNNNGC	1 cut(s)	856
NlaIII	CATG	7 cut(s)	96, 156, 329, 440, 793, 916, 1058
NmuCI	GTSAC	2 cut(s)	664, 1057
NspI	RCATGY	2 cut(s)	440, 1058
OliI	CACNNNNGTG	1 cut(s)	671
PaeI	GCATGC	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	953
PkrI	GCNGC	1 cut(s)	849
Psp124BI	GAGCTC	2 cut(s)	753, 789
PstI	CTGCAG	1 cut(s)	849
PsuI	RGATCY	2 cut(s)	193, 247
RseI	CAYNNNNRTG	2 cut(s)	441, 671
SacI	GAGCTC	2 cut(s)	753, 789
SaqAI	TTAA	3 cut(s)	321, 890, 1026
SatI	GCNGC	1 cut(s)	848
SduI	GDGCHC	4 cut(s)	536, 714, 753, 789
SfaNI	GCATC	6 cut(s)	73, 640, 673, 710, 859, 889
SfcI	CTRYAG	1 cut(s)	845
SmiMI	CAYNNNNRTG	2 cut(s)	441, 671
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
SphI	GCATGC	1 cut(s)	440
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	2 cut(s)	201, 441
SstI	GAGCTC	2 cut(s)	753, 789
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	2 cut(s)	673, 1063
TaqI	TCGA	1 cut(s)	925
Tru1I	TTAA	3 cut(s)	321, 890, 1026
Tru9I	TTAA	3 cut(s)	321, 890, 1026
TscAI	CASTG	2 cut(s)	676, 849
TseFI	GTSAC	2 cut(s)	664, 1057
TseI	GCWGC	1 cut(s)	847
Tsp45I	GTSAC	2 cut(s)	664, 1057
TspRI	CASTG	2 cut(s)	676, 849
XapI	RAATTY	8 cut(s)	296, 386, 457, 691, 717, 814, 988, 1035
XceI	RCATGY	2 cut(s)	440, 1058
XmiI	GTMKAC	1 cut(s)	1071
XmnI	GAANNNNTTC	1 cut(s)	953
XspI	CTAG	2 cut(s)	201, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.