RchiOBHm_Chr7g0177201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008182
Physical Location & Seq
Reverse (-)
279319 .. 283126
3808 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15783

Sequence Viewer

Length: 354 bp
ATGGCGATCGACTCGGTAGAGGGAGGTTCGGTCCGGCGGAAAAGTTGGTGGCTCGATTCGTCGATCGCCGTCGAGTTTCTTGACCCCGATATTCTAGGGTTCTTGAGACGGAGCAGGATACCATTACTTTGCTGTCCAGCTGTGGGGGTTTCTACTTTCTCGTTTGAATCAACCAGCCACAGTGATTCAGTGGTTTGTGTACTTGGGAAGTCTCCTGAGGTCTACTGGTACACATCAATATTGGACATCTGCTTAACCAAGTGTTCTGACGAGAGACCCAAGCCACACTGCGCCGCTTTGTTTGCATTCGGACAGTGGCAAGATTTCAGATCAACAAGGCTAGTTGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.05

Weight (kDa)

6.06

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 222
AciI CCGC 2 cut(s) 37, 294
AfaI GTAC 2 cut(s) 201, 230
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 3 cut(s) 100, 216, 268
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 31
AvaII GGWCC 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 216
BceAI ACGGC 1 cut(s) 53
BciVI GTATCC 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 100, 216, 268
BfaI CTAG 2 cut(s) 95, 341
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 230
Bse21I CCTNAGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 230
Bsh1285I CGRYCG 2 cut(s) 9, 66
BsiEI CGRYCG 2 cut(s) 9, 66
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 3 cut(s) 100, 216, 268
BsmBI CGTCTC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 305
Bso31I GGTCTC 1 cut(s) 268
Bsp143I GATC 3 cut(s) 6, 63, 329
BspACI CCGC 2 cut(s) 37, 294
BspCNI CTCAG 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 230
BssMI GATC 3 cut(s) 6, 63, 329
Bst4CI ACNGT 2 cut(s) 182, 315
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 353
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 3 cut(s) 9, 66, 332
BstMAI GTCTC 3 cut(s) 100, 216, 268
BstMBI GATC 3 cut(s) 6, 63, 329
BstMCI CGRYCG 2 cut(s) 9, 66
BstMWI GCNNNNNNNGC 1 cut(s) 302
Bsu36I CCTNAGG 1 cut(s) 216
BsuI GTATCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 353
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 4 cut(s) 187, 195, 286, 320
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 31
CpoI CGGWCCG 1 cut(s) 31
Csp6I GTAC 2 cut(s) 200, 229
CspI CGGWCCG 1 cut(s) 31
CviJI RGCY 5 cut(s) 52, 140, 177, 283, 340
CviKI_1 RGCY 5 cut(s) 52, 140, 177, 283, 340
CviQI GTAC 2 cut(s) 200, 229
DdeI CTNAG 1 cut(s) 216
DpnI GATC 3 cut(s) 8, 65, 331
DpnII GATC 3 cut(s) 6, 63, 329
EciI GGCGGA 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 100
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 2 cut(s) 95, 341
GlaI GCGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 294
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 293
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 4 cut(s) 11, 56, 167, 185
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 3 cut(s) 200, 223, 231
Hpy188I TCNGA 3 cut(s) 268, 311, 329
Hpy188III TCNNGA 3 cut(s) 80, 103, 215
Hpy8I GTNNAC 3 cut(s) 200, 223, 231
Hpy99I CGWCG 2 cut(s) 64, 74
HpyCH4III ACNGT 2 cut(s) 182, 315
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 216
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 3 cut(s) 6, 63, 329
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 47, 100, 150, 187, 211, 228
MaeI CTAG 2 cut(s) 95, 341
MalI GATC 3 cut(s) 8, 65, 331
MboI GATC 3 cut(s) 6, 63, 329
MlyI GAGTC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 3 cut(s) 13, 17, 211
MseI TTAA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 3 cut(s) 6, 63, 329
PctI GAATGC 1 cut(s) 305
PfeI GAWTC 3 cut(s) 56, 167, 185
PkrI GCNGC 1 cut(s) 295
Ple19I CGATCG 2 cut(s) 9, 66
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PspPI GGNCC 1 cut(s) 31
PvuI CGATCG 2 cut(s) 9, 66
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 2 cut(s) 201, 230
RsaNI GTAC 2 cut(s) 200, 229
Rsr2I CGGWCCG 1 cut(s) 31
RsrII CGGWCCG 1 cut(s) 31
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 3 cut(s) 6, 63, 329
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 5
SetI ASST 3 cut(s) 28, 142, 222
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SsiI CCGC 2 cut(s) 37, 294
SspI AATATT 1 cut(s) 240
SspMI CTAG 2 cut(s) 95, 341
TaaI ACNGT 2 cut(s) 182, 315
TaqI TCGA 4 cut(s) 9, 54, 62, 72
TaqII GACCGA 1 cut(s) 19
TatI WGTACW 1 cut(s) 199
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 3 cut(s) 56, 167, 185
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 4 cut(s) 187, 195, 293, 320
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 4 cut(s) 187, 195, 293, 320
VpaK11BI GGWCC 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 2 cut(s) 95, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.